Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Reverse (-)

26072159 .. 26073283

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATACATGCCCATGTGGAACACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTGAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGGCCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGATCAGGAAGATACCAGCACTGAGTTTGGAGTATGATCACTTCACATTGTCCGCGGCATTACGTGCCTGTGCTGGGCTAGTTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATGTTTCTGCTGAGTTCATTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCACTGCTTGGTTTGTGTGGTAGAATTGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGTTGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCTGCTTGTACTCACACCGGTCAATTGCAGCTCGGCATGGAGTATTTTGAATCCATGGAACTCAAGTTCTACTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGTTGTGTAGAGCTGGTGAATTGGGCAAGGAGTGGAAGCTTGTTGATGAGATGCTTAATAAAGGTCACAGCAGCTCCACTGTCCCTATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCAAGGTGATCTTGAATTGGGTAAACTGGCTGCTCAAAGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTTTTGCTATCAAATTTATATGCTAGGTTCGGTATGTGGCACGAGATTAATCATTTGAGGGAGTTAATGAAAGAAAAGGGGTCAAGGAAAGATGTCGGATATAGCCGGATTGCAGTCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

374

Amino Acids

41.15

Weight (kDa)

6.23

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	187 - 235	1.2e-08	PPR repeat family
PPR	PF01535	190 - 220	6.2e-06	PPR repeat
E_motif	PF20431	311 - 370	1.5e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccII	CGCG	1 cut(s)	365
AciI	CCGC	4 cut(s)	30, 233, 363, 365
AcsI	RAATTY	1 cut(s)	1012
AfaI	GTAC	3 cut(s)	417, 624, 703
AfiI	CCNNNNNNNGG	5 cut(s)	291, 384, 670, 895, 896
AgeI	ACCGGT	1 cut(s)	710
AgsI	TTSAA	9 cut(s)	401, 485, 532, 629, 637, 743, 769, 938, 976
AjnI	CCWGG	1 cut(s)	772
AloI	GAACNNNNNNTCC	2 cut(s)	743, 775
AluBI	AGCT	6 cut(s)	724, 792, 818, 844, 879, 902
AluI	AGCT	6 cut(s)	724, 792, 818, 844, 879, 902
Alw21I	GWGCWC	2 cut(s)	146, 169
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	74, 721, 876, 953
ApoI	RAATTY	1 cut(s)	1012
AseI	ATTAAT	1 cut(s)	1047
AsiGI	ACCGGT	1 cut(s)	710
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	4 cut(s)	139, 290, 833, 941
AvaII	GGWCC	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	967
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BauI	CACGAG	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	146, 169
BbvI	GCAGC	4 cut(s)	61, 733, 888, 940
BccI	CCATC	4 cut(s)	533, 643, 662, 983
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	602
BclI	TGATCA	2 cut(s)	312, 346
BfaI	CTAG	3 cut(s)	389, 797, 1023
BfmI	CTRYAG	2 cut(s)	39, 787
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	6 cut(s)	75, 233, 366, 722, 877, 954
BlsI	GCNGC	6 cut(s)	76, 234, 367, 723, 878, 955
Bme1390I	CCNGG	1 cut(s)	774
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	776
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	5 cut(s)	86, 196, 271, 420, 846
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	740, 989
BsaAI	YACGTR	2 cut(s)	48, 374
BsaJI	CCNNGG	3 cut(s)	363, 513, 747
BsaWI	WCCGGW	1 cut(s)	710
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	5 cut(s)	291, 384, 670, 895, 896
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	2 cut(s)	147, 954
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	3 cut(s)	363, 513, 747
BseLI	CCNNNNNNNGG	5 cut(s)	291, 384, 670, 895, 896
BseMII	CTCAG	4 cut(s)	227, 323, 461, 533
BseNI	ACTGG	2 cut(s)	147, 954
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	4 cut(s)	61, 733, 888, 940
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	146, 169
BsiSI	CCGG	2 cut(s)	711, 1105
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	5 cut(s)	291, 384, 670, 895, 896
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	146, 169, 967
Bsp143I	GATC	4 cut(s)	312, 346, 922, 931
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	4 cut(s)	30, 233, 363, 365
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	4 cut(s)	228, 324, 462, 532
BspFNI	CGCG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	2 cut(s)	147, 954
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	363, 513, 747
BssMI	GATC	4 cut(s)	312, 346, 922, 931
BssSI	CACGAG	1 cut(s)	1040
BssT1I	CCWWGG	2 cut(s)	513, 747
Bst2BI	CACGAG	1 cut(s)	1040
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	26, 247, 688, 886
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	2 cut(s)	48, 374
BstC8I	GCNNGC	2 cut(s)	211, 916
BstDEI	CTNAG	4 cut(s)	236, 332, 470, 519
BstDSI	CCRYGG	2 cut(s)	363, 747
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	4 cut(s)	315, 349, 925, 934
BstMBI	GATC	4 cut(s)	312, 346, 922, 931
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 962
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	11, 119
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	2 cut(s)	39, 787
BstSLI	GKGCMC	1 cut(s)	967
BstSNI	TACGTA	1 cut(s)	48
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	61, 733, 888, 940
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	2 cut(s)	363, 747
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	5 cut(s)	154, 243, 329, 581, 882
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	211, 916
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	776
Cfr42I	CCGCGG	1 cut(s)	366
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	3 cut(s)	416, 623, 702
CspAI	ACCGGT	1 cut(s)	710
CviAII	CATG	7 cut(s)	8, 14, 116, 122, 419, 730, 748
CviQI	GTAC	3 cut(s)	416, 623, 702
DdeI	CTNAG	4 cut(s)	236, 332, 470, 519
DpnI	GATC	4 cut(s)	314, 348, 924, 933
DpnII	GATC	4 cut(s)	312, 346, 922, 931
Eco105I	TACGTA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	513, 747
Eco47I	GGWCC	1 cut(s)	776
EcoRII	CCWGG	1 cut(s)	772
EcoT14I	CCWWGG	2 cut(s)	513, 747
ErhI	CCWWGG	2 cut(s)	513, 747
FaeI	CATG	7 cut(s)	11, 17, 119, 125, 422, 733, 751
FalI	AAGNNNNNCTT	6 cut(s)	609, 641, 749, 781, 918, 950
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	7 cut(s)	7, 13, 115, 121, 418, 729, 747
FbaI	TGATCA	2 cut(s)	312, 346
Fnu4HI	GCNGC	6 cut(s)	75, 233, 366, 722, 877, 954
Fsp4HI	GCNGC	6 cut(s)	75, 233, 366, 722, 877, 954
FspBI	CTAG	3 cut(s)	389, 797, 1023
GluI	GCNGC	6 cut(s)	75, 233, 366, 722, 877, 954
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	711, 1105
Hin1II	CATG	7 cut(s)	11, 17, 119, 125, 422, 733, 751
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	2 cut(s)	743, 976
HpaII	CCGG	2 cut(s)	711, 1105
HphI	GGTGA	4 cut(s)	139, 290, 833, 941
Hpy166II	GTNNAC	3 cut(s)	294, 576, 947
Hpy188I	TCNGA	3 cut(s)	171, 522, 1097
Hpy188III	TCNNGA	3 cut(s)	316, 779, 935
Hpy8I	GTNNAC	3 cut(s)	294, 576, 947
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	4 cut(s)	26, 247, 688, 886
HpyCH4IV	ACGT	2 cut(s)	47, 373
HpyCH4V	TGCA	7 cut(s)	77, 209, 254, 395, 721, 918, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 962
HpyF3I	CTNAG	4 cut(s)	236, 332, 470, 519
HpySE526I	ACGT	2 cut(s)	47, 373
Hsp92II	CATG	7 cut(s)	11, 17, 119, 125, 422, 733, 751
Ksp22I	TGATCA	2 cut(s)	312, 346
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	312, 346, 922, 931
LmnI	GCTCC	3 cut(s)	149, 884, 899
Lsp1109I	GCAGC	4 cut(s)	61, 733, 888, 940
LweI	GCATC	5 cut(s)	86, 196, 271, 420, 846
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	3 cut(s)	389, 797, 1023
MaeII	ACGT	2 cut(s)	47, 373
MaeIII	GTNAC	3 cut(s)	682, 869, 1114
MalI	GATC	4 cut(s)	314, 348, 924, 933
MboI	GATC	4 cut(s)	312, 346, 922, 931
MboII	GAAGA	2 cut(s)	72, 331
MfeI	CAATTG	1 cut(s)	716
MhlI	GDGCHC	3 cut(s)	146, 169, 967
MmeI	TCCRAC	1 cut(s)	1075
MnlI	CCTC	5 cut(s)	292, 544, 613, 990, 1050
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	6 cut(s)	68, 87, 861, 909, 1047, 1064
MslI	CAYNNNNRTG	3 cut(s)	12, 120, 987
MspA1I	CMGCKG	3 cut(s)	235, 365, 792
MspI	CCGG	2 cut(s)	711, 1105
MspR9I	CCNGG	1 cut(s)	774
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	374, 962
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	4 cut(s)	312, 346, 922, 931
NlaIII	CATG	7 cut(s)	11, 17, 119, 125, 422, 733, 751
NmeAIII	GCCGAG	1 cut(s)	705
NmuCI	GTSAC	3 cut(s)	682, 869, 1114
NspI	RCATGY	2 cut(s)	11, 119
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	743, 976
PflMI	CCANNNNNTGG	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	710
PkrI	GCNGC	6 cut(s)	76, 234, 367, 723, 878, 955
Ppu21I	YACGTR	2 cut(s)	48, 374
PshBI	ATTAAT	1 cut(s)	1047
Psp6I	CCWGG	1 cut(s)	772
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	772
PspPI	GGNCC	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	792
RsaI	GTAC	3 cut(s)	417, 624, 703
RsaNI	GTAC	3 cut(s)	416, 623, 702
RseI	CAYNNNNRTG	3 cut(s)	12, 120, 987
SacII	CCGCGG	1 cut(s)	366
SaqAI	TTAA	6 cut(s)	68, 87, 861, 909, 1047, 1064
SatI	GCNGC	6 cut(s)	75, 233, 366, 722, 877, 954
Sau3AI	GATC	4 cut(s)	312, 346, 922, 931
Sau96I	GGNCC	1 cut(s)	776
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	3 cut(s)	146, 169, 967
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	5 cut(s)	86, 196, 271, 420, 846
SfcI	CTRYAG	2 cut(s)	39, 787
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	3 cut(s)	12, 120, 987
SmlI	CTYRAG	2 cut(s)	755, 968
SmoI	CTYRAG	2 cut(s)	755, 968
SnaBI	TACGTA	1 cut(s)	48
SsiI	CCGC	4 cut(s)	30, 233, 363, 365
SspMI	CTAG	3 cut(s)	389, 797, 1023
StyD4I	CCNGG	1 cut(s)	772
StyI	CCWWGG	2 cut(s)	513, 747
TaaI	ACNGT	4 cut(s)	26, 247, 688, 886
TaiI	ACGT	2 cut(s)	50, 376
TatI	WGTACW	1 cut(s)	701
TauI	GCSGC	2 cut(s)	235, 368
TfiI	GAWTC	2 cut(s)	743, 976
Tru1I	TTAA	6 cut(s)	68, 87, 861, 909, 1047, 1064
Tru9I	TTAA	6 cut(s)	68, 87, 861, 909, 1047, 1064
TscAI	CASTG	5 cut(s)	154, 250, 336, 588, 889
TseFI	GTSAC	3 cut(s)	682, 869, 1114
TseI	GCWGC	4 cut(s)	74, 721, 876, 953
Tsp45I	GTSAC	3 cut(s)	682, 869, 1114
TspDTI	ATGAA	3 cut(s)	240, 465, 1082
TspRI	CASTG	5 cut(s)	154, 250, 336, 588, 889
Van91I	CCANNNNNTGG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	776
VspI	ATTAAT	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	1012
XceI	RCATGY	2 cut(s)	11, 119
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	389, 797, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.