Rroxscaffold_7G00199690

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
46786264 .. 46788221
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199690.1

Sequence Viewer

Length: 1428 bp
ATGGAGGAGATATGGCCGAAGAAGGTGAAGAGGTCGGAGAGGAAGAGAGAATCAGGGAGAGAGAAGAGGGAGAGCTCGAATCAAAGCGCCGTTAAGAAACTCCATGCTCACCTTCTAACAACAGGGTTGCTTATCATATCCCCTCATTTTCACGCTAAACTTATCCTCTCATACACCAAATGCCTTCCCCAACACAACCTCCAGACACTGACCCACTTCTTCAAATGCATGAAACCCAAAAGCGAATTACCAATCAATGTGTTAATGGCTGACTTCTGCCGAAATGGGTTCAGTTTTCTTGCTCTCAAAACCTTATCATTCATGCACAGTAGCTGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGTTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATATGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTACTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGACCAAATGTTTGATGAAATGCCGCTGATAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGACCAGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTGACATTGTCCGCGGCATTACGTGCCTGTGCTGGGTTAGTTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATATTTTTGCTGAGTTCATTGATTGCAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTAAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCACTGCTTGGTGTGTGTGGTAGAAATGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGATGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCAGCTTGTGCTCGCACCGGTCAATTGCGGCTCGGCATTGAGTATTTTGAATCCATGGAACTCAAGTTCAGCTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGTAGAGCTGGTGAATTGGGCAAGGCATGGAAGCTCGTTGATGAGATGCTTAATAAAGGTCACAGCAGCTGCACTGTCCCTATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCAAGGTGATCTTGAATTGGGTAAACTGGCTGCTCAAAGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTTTTGCTATCAAATTTATATGCCAGGTTCGGTATGTGGCATGAGATTAATCATTTGAGGGAGTTGATGAAAGAAAAGAGGTTAAGGAAAGATGTCGGATATAGCCGTATTGAAGTCACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

52.99

Weight (kDa)

8.74

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 288 - 337 6.6e-10 PPR repeat family
PPR PF01535 291 - 321 6.2e-07 PPR repeat
PPR_1 PF12854 358 - 387 7.9e-07 PPR repeat
E_motif PF20431 412 - 472 3.7e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 594
AccII CGCG 1 cut(s) 668
AciI CCGC 4 cut(s) 536, 666, 668, 1024
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 2 cut(s) 835, 1315
AfaI GTAC 3 cut(s) 469, 720, 927
AfiI CCNNNNNNNGG 5 cut(s) 594, 687, 973, 1198, 1199
AgeI ACCGGT 1 cut(s) 1013
AgsI TTSAA 9 cut(s) 223, 704, 932, 940, 1046, 1072, 1241, 1279, 1415
AjnI CCWGG 3 cut(s) 617, 1075, 1325
AloI GAACNNNNNNTCC 2 cut(s) 1046, 1078
AluBI AGCT 9 cut(s) 75, 333, 1001, 1068, 1095, 1121, 1147, 1182, 1205
AluI AGCT 9 cut(s) 75, 333, 1001, 1068, 1095, 1121, 1147, 1182, 1205
Alw21I GWGCWC 3 cut(s) 77, 449, 1009
AlwNI CAGNNNCTG 3 cut(s) 208, 333, 1182
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 3 cut(s) 1179, 1182, 1256
ApoI RAATTY 2 cut(s) 835, 1315
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AseI ATTAAT 1 cut(s) 1350
AsiGI ACCGGT 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 1079
AsuHPI GGTGA 5 cut(s) 37, 101, 593, 1136, 1244
AvaII GGWCC 1 cut(s) 1079
BaeGI GKGCMC 1 cut(s) 1270
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 3 cut(s) 77, 449, 1009
BbvI GCAGC 3 cut(s) 1169, 1191, 1243
BccI CCATC 4 cut(s) 836, 946, 965, 1286
BceAI ACGGC 2 cut(s) 74, 1392
BciT130I CCWGG 3 cut(s) 619, 1077, 1327
BciVI GTATCC 1 cut(s) 905
BclI TGATCA 1 cut(s) 649
BfaI CTAG 1 cut(s) 1100
BfmI CTRYAG 2 cut(s) 342, 1090
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 706
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 6 cut(s) 536, 669, 1025, 1180, 1183, 1257
BlsI GCNGC 6 cut(s) 537, 670, 1026, 1181, 1184, 1258
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 619, 1077, 1327
Bme18I GGWCC 1 cut(s) 1079
BmgT120I GGNCC 1 cut(s) 1079
BmrFI CCNGG 3 cut(s) 619, 1077, 1327
BmsI GCATC 6 cut(s) 389, 499, 574, 615, 723, 1149
BpmI CTGGAG 2 cut(s) 185, 433
BpuEI CTTGAG 2 cut(s) 1043, 1292
BsaAI YACGTR 2 cut(s) 351, 677
BsaJI CCNNGG 3 cut(s) 666, 816, 1050
BsaWI WCCGGW 1 cut(s) 1013
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 5 cut(s) 594, 687, 973, 1198, 1199
Bse118I RCCGGY 2 cut(s) 628, 1013
Bse1I ACTGG 2 cut(s) 450, 1257
Bse3DI GCAATG 1 cut(s) 795
BseBI CCWGG 3 cut(s) 619, 1077, 1327
BseDI CCNNGG 3 cut(s) 666, 816, 1050
BseLI CCNNNNNNNGG 5 cut(s) 594, 687, 973, 1198, 1199
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 4 cut(s) 626, 764, 836, 1011
BseNI ACTGG 2 cut(s) 450, 1257
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 3 cut(s) 1169, 1191, 1243
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 1168
Bsh1236I CGCG 1 cut(s) 668
BshFI GGCC 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 1013
BsiHKAI GWGCWC 3 cut(s) 77, 449, 1009
BsiSI CCGG 2 cut(s) 629, 1014
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 5 cut(s) 594, 687, 973, 1198, 1199
BsmFI GGGAC 1 cut(s) 1175
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 4 cut(s) 77, 449, 1009, 1270
Bsp143I GATC 3 cut(s) 649, 1225, 1234
Bsp19I CCATGG 1 cut(s) 1050
BspACI CCGC 4 cut(s) 536, 666, 668, 1024
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 4 cut(s) 627, 765, 835, 1010
BspFNI CGCG 1 cut(s) 668
BspMI ACCTGC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 628, 1013
BsrI ACTGG 2 cut(s) 450, 1257
BssAI RCCGGY 2 cut(s) 628, 1013
BssECI CCNNGG 3 cut(s) 666, 816, 1050
BssMI GATC 3 cut(s) 649, 1225, 1234
BssT1I CCWWGG 2 cut(s) 816, 1050
Bst2UI CCWGG 3 cut(s) 619, 1077, 1327
Bst4CI ACNGT 5 cut(s) 329, 376, 550, 991, 1189
Bst6I CTCTTC 3 cut(s) 23, 38, 59
BstAPI GCANNNNNTGC 1 cut(s) 677
BstBAI YACGTR 2 cut(s) 351, 677
BstC8I GCNNGC 3 cut(s) 630, 1009, 1219
BstDEI CTNAG 4 cut(s) 635, 773, 822, 997
BstDSI CCRYGG 2 cut(s) 666, 1050
BstFNI CGCG 1 cut(s) 668
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 652, 1228, 1237
BstMBI GATC 3 cut(s) 649, 1225, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 677, 1265
BstNI CCWGG 3 cut(s) 619, 1077, 1327
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 617, 1075, 1325
BstSFI CTRYAG 2 cut(s) 342, 1090
BstSLI GKGCMC 1 cut(s) 1270
BstSNI TACGTA 1 cut(s) 351
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 1169, 1191, 1243
BstXI CCANNNNNNTGG 1 cut(s) 496
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 2 cut(s) 666, 1050
BtsI GCAGTG 1 cut(s) 884
BtsIMutI CAGTG 6 cut(s) 206, 457, 546, 632, 884, 1185
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 3 cut(s) 630, 1009, 1219
CaiI CAGNNNCTG 3 cut(s) 208, 333, 1182
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 2 cut(s) 628, 1013
Cfr13I GGNCC 1 cut(s) 1079
Cfr42I CCGCGG 1 cut(s) 669
CsiI ACCWGGT 1 cut(s) 1075
Csp6I GTAC 3 cut(s) 468, 719, 926
CspAI ACCGGT 1 cut(s) 1013
CviAII CATG 8 cut(s) 104, 229, 322, 419, 722, 1051, 1140, 1343
CviQI GTAC 3 cut(s) 468, 719, 926
DdeI CTNAG 4 cut(s) 635, 773, 822, 997
DpnI GATC 3 cut(s) 651, 1227, 1236
DpnII GATC 3 cut(s) 649, 1225, 1234
DraI TTTAAA 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 3 cut(s) 23, 38, 59
EarI CTCTTC 3 cut(s) 23, 38, 59
Ecl136II GAGCTC 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 816, 1050
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 1079
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 3 cut(s) 617, 1075, 1325
EcoT14I CCWWGG 2 cut(s) 816, 1050
EcoT22I ATGCAT 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 2 cut(s) 816, 1050
FaeI CATG 8 cut(s) 107, 232, 325, 422, 725, 1054, 1143, 1346
FalI AAGNNNNNCTT 6 cut(s) 912, 944, 1052, 1084, 1221, 1253
FaqI GGGAC 1 cut(s) 1175
FatI CATG 8 cut(s) 103, 228, 321, 418, 721, 1050, 1139, 1342
FauNDI CATATG 1 cut(s) 426
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 6 cut(s) 536, 669, 1025, 1180, 1183, 1257
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 536, 669, 1025, 1180, 1183, 1257
FspBI CTAG 1 cut(s) 1100
GlaI GCGC 1 cut(s) 88
GluI GCNGC 6 cut(s) 536, 669, 1025, 1180, 1183, 1257
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 2 cut(s) 185, 433
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 629, 1014
HhaI GCGC 1 cut(s) 89
Hin1II CATG 8 cut(s) 107, 232, 325, 422, 725, 1054, 1143, 1346
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 4 cut(s) 50, 79, 1046, 1279
HpaII CCGG 2 cut(s) 629, 1014
HphI GGTGA 5 cut(s) 37, 101, 593, 1136, 1244
Hpy166II GTNNAC 3 cut(s) 597, 879, 1250
Hpy188I TCNGA 4 cut(s) 37, 474, 825, 1400
Hpy188III TCNNGA 3 cut(s) 202, 1082, 1238
Hpy8I GTNNAC 3 cut(s) 597, 879, 1250
HpyAV CCTTC 4 cut(s) 16, 122, 194, 950
HpyCH4III ACNGT 5 cut(s) 329, 376, 550, 991, 1189
HpyCH4IV ACGT 2 cut(s) 350, 676
HpyCH4V TGCA 9 cut(s) 228, 325, 380, 512, 557, 698, 788, 1185, 1221
HpyF10VI GCNNNNNNNGC 2 cut(s) 677, 1265
HpyF3I CTNAG 4 cut(s) 635, 773, 822, 997
HpySE526I ACGT 2 cut(s) 350, 676
Hsp92II CATG 8 cut(s) 107, 232, 325, 422, 725, 1054, 1143, 1346
HspAI GCGC 1 cut(s) 87
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 649
KspI CCGCGG 1 cut(s) 669
Kzo9I GATC 3 cut(s) 649, 1225, 1234
LmnI GCTCC 2 cut(s) 452, 1202
Lsp1109I GCAGC 3 cut(s) 1169, 1191, 1243
LweI GCATC 6 cut(s) 389, 499, 574, 615, 723, 1149
MabI ACCWGGT 1 cut(s) 1075
MaeI CTAG 1 cut(s) 1100
MaeII ACGT 2 cut(s) 350, 676
MaeIII GTNAC 3 cut(s) 985, 1172, 1417
MalI GATC 3 cut(s) 651, 1227, 1236
MboI GATC 3 cut(s) 649, 1225, 1234
MboII GAAGA 7 cut(s) 31, 40, 55, 76, 211, 375, 634
MfeI CAATTG 1 cut(s) 1019
MhlI GDGCHC 4 cut(s) 77, 449, 1009, 1270
MmeI TCCRAC 2 cut(s) 15, 1378
Mph1103I ATGCAT 1 cut(s) 230
MroNI GCCGGC 1 cut(s) 628
MseI TTAA 9 cut(s) 93, 263, 371, 390, 833, 1164, 1212, 1350, 1385
MslI CAYNNNNRTG 1 cut(s) 1290
MspA1I CMGCKG 4 cut(s) 538, 668, 1095, 1182
MspI CCGG 2 cut(s) 629, 1014
MspR9I CCNGG 3 cut(s) 619, 1077, 1327
MunI CAATTG 1 cut(s) 1019
MvaI CCWGG 3 cut(s) 619, 1077, 1327
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 2 cut(s) 677, 1265
NaeI GCCGGC 1 cut(s) 630
NcoI CCATGG 1 cut(s) 1050
NdeI CATATG 1 cut(s) 426
NdeII GATC 3 cut(s) 649, 1225, 1234
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 8 cut(s) 107, 232, 325, 422, 725, 1054, 1143, 1346
NmeAIII GCCGAG 1 cut(s) 1008
NmuCI GTSAC 3 cut(s) 985, 1172, 1417
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 1 cut(s) 422
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 4 cut(s) 50, 79, 1046, 1279
PflFI GACNNNGTC 1 cut(s) 661
PflMI CCANNNNNTGG 1 cut(s) 594
PinAI ACCGGT 1 cut(s) 1013
PkrI GCNGC 6 cut(s) 537, 670, 1026, 1181, 1184, 1258
Ppu21I YACGTR 2 cut(s) 351, 677
PshBI ATTAAT 1 cut(s) 1350
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 617, 1075, 1325
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 3 cut(s) 617, 1075, 1325
PspPI GGNCC 1 cut(s) 1079
PstNI CAGNNNCTG 3 cut(s) 208, 333, 1182
PsyI GACNNNGTC 1 cut(s) 661
PvuII CAGCTG 2 cut(s) 1095, 1182
RsaI GTAC 3 cut(s) 469, 720, 927
RsaNI GTAC 3 cut(s) 468, 719, 926
RseI CAYNNNNRTG 1 cut(s) 1290
SacI GAGCTC 1 cut(s) 77
SacII CCGCGG 1 cut(s) 669
SaqAI TTAA 9 cut(s) 93, 263, 371, 390, 833, 1164, 1212, 1350, 1385
SatI GCNGC 6 cut(s) 536, 669, 1025, 1180, 1183, 1257
Sau3AI GATC 3 cut(s) 649, 1225, 1234
Sau96I GGNCC 1 cut(s) 1079
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 3 cut(s) 619, 1077, 1327
SduI GDGCHC 4 cut(s) 77, 449, 1009, 1270
SexAI ACCWGGT 1 cut(s) 1075
SfaNI GCATC 6 cut(s) 389, 499, 574, 615, 723, 1149
SfcI CTRYAG 2 cut(s) 342, 1090
Sfr303I CCGCGG 1 cut(s) 669
SgrBI CCGCGG 1 cut(s) 669
SinI GGWCC 1 cut(s) 1079
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 2 cut(s) 1058, 1271
SmoI CTYRAG 2 cut(s) 1058, 1271
SnaBI TACGTA 1 cut(s) 351
SsiI CCGC 4 cut(s) 536, 666, 668, 1024
SspMI CTAG 1 cut(s) 1100
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 617, 1075, 1325
StyI CCWWGG 2 cut(s) 816, 1050
TaaI ACNGT 5 cut(s) 329, 376, 550, 991, 1189
TaiI ACGT 2 cut(s) 353, 679
TaqI TCGA 1 cut(s) 77
TatI WGTACW 1 cut(s) 467
TauI GCSGC 3 cut(s) 538, 671, 1027
TfiI GAWTC 4 cut(s) 50, 79, 1046, 1279
Tru1I TTAA 9 cut(s) 93, 263, 371, 390, 833, 1164, 1212, 1350, 1385
Tru9I TTAA 9 cut(s) 93, 263, 371, 390, 833, 1164, 1212, 1350, 1385
TscAI CASTG 6 cut(s) 213, 457, 553, 639, 891, 1192
TseFI GTSAC 3 cut(s) 985, 1172, 1417
TseI GCWGC 3 cut(s) 1179, 1182, 1256
Tsp45I GTSAC 3 cut(s) 985, 1172, 1417
TspDTI ATGAA 5 cut(s) 245, 310, 543, 768, 1385
TspRI CASTG 6 cut(s) 213, 457, 553, 639, 891, 1192
Tth111I GACNNNGTC 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 594
VpaK11BI GGWCC 1 cut(s) 1079
VspI ATTAAT 1 cut(s) 1350
XapI RAATTY 2 cut(s) 835, 1315
XceI RCATGY 1 cut(s) 422
XspI CTAG 1 cut(s) 1100
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.