Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Reverse (-)

27502940 .. 27503730

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGACCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGACCAGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTGACATTGTCCGCGGCATTACGTGCTTGTGCTGGGCTAGCTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATGTTTCTGCTGAGTTCATTGATTGAAATAAATGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGATGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCAGCATGTGCTCGCACCGGTCAATTGCGGCTCGGCATTGAGTATTTTGAATCCATGGAACTCAAGTTCAGCTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

5.2

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	1 cut(s)	347
AciI	CCGC	5 cut(s)	12, 215, 345, 347, 589
AfaI	GTAC	2 cut(s)	399, 492
AfiI	CCNNNNNNNGG	2 cut(s)	273, 538
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	6 cut(s)	383, 467, 497, 505, 611, 637
AjnI	CCWGG	2 cut(s)	296, 640
AloI	GAACNNNNNNTCC	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	374, 633, 660
AluI	AGCT	3 cut(s)	374, 633, 660
Alw21I	GWGCWC	3 cut(s)	128, 151, 574
ApeKI	GCWGC	2 cut(s)	56, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsiGI	ACCGGT	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	644
Bbv12I	GWGCWC	3 cut(s)	128, 151, 574
BbvI	GCAGC	2 cut(s)	43, 361
BccI	CCATC	2 cut(s)	511, 530
BciT130I	CCWGG	2 cut(s)	298, 642
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	2 cut(s)	371, 665
BfmI	CTRYAG	3 cut(s)	21, 375, 655
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	57, 215, 348, 375, 590
BlsI	GCNGC	5 cut(s)	58, 216, 349, 376, 591
Bme1390I	CCNGG	2 cut(s)	298, 642
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	644
BmrFI	CCNGG	2 cut(s)	298, 642
BmsI	GCATC	5 cut(s)	68, 178, 253, 294, 402
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	2 cut(s)	30, 356
BsaJI	CCNNGG	2 cut(s)	345, 615
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 538
Bse118I	RCCGGY	2 cut(s)	307, 578
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	298, 642
BseDI	CCNNGG	2 cut(s)	345, 615
BseLI	CCNNNNNNNGG	2 cut(s)	273, 538
BseMII	CTCAG	4 cut(s)	209, 305, 443, 576
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	43, 361
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	3 cut(s)	128, 151, 574
BsiSI	CCGG	2 cut(s)	308, 579
BslI	CCNNNNNNNGG	2 cut(s)	273, 538
Bsp1286I	GDGCHC	3 cut(s)	128, 151, 574
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	5 cut(s)	12, 215, 345, 347, 589
BspCNI	CTCAG	4 cut(s)	210, 306, 444, 575
BspFNI	CGCG	1 cut(s)	347
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	307, 578
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	2 cut(s)	307, 578
BssECI	CCNNGG	2 cut(s)	345, 615
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	298, 642
Bst4CI	ACNGT	3 cut(s)	8, 229, 556
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	2 cut(s)	30, 356
BstC8I	GCNNGC	3 cut(s)	309, 372, 574
BstDEI	CTNAG	4 cut(s)	218, 314, 452, 562
BstDSI	CCRYGG	2 cut(s)	345, 615
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 371
BstNI	CCWGG	2 cut(s)	298, 642
BstNSI	RCATGY	2 cut(s)	101, 570
BstSCI	CCNGG	2 cut(s)	296, 640
BstSFI	CTRYAG	3 cut(s)	21, 375, 655
BstSNI	TACGTA	1 cut(s)	30
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	43, 361
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	470
BtgI	CCRYGG	2 cut(s)	345, 615
BtsIMutI	CAGTG	3 cut(s)	136, 225, 311
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	309, 372, 574
Cfr10I	RCCGGY	2 cut(s)	307, 578
Cfr13I	GGNCC	1 cut(s)	644
Cfr42I	CCGCGG	1 cut(s)	348
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	398, 491
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	5 cut(s)	98, 104, 401, 567, 616
CviJI	RGCY	8 cut(s)	81, 120, 370, 374, 531, 592, 633, 660
CviKI_1	RGCY	8 cut(s)	81, 120, 370, 374, 531, 592, 633, 660
CviQI	GTAC	2 cut(s)	398, 491
DdeI	CTNAG	4 cut(s)	218, 314, 452, 562
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	296, 640
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	5 cut(s)	101, 107, 404, 570, 619
FalI	AAGNNNNNCTT	4 cut(s)	477, 509, 617, 649
FatI	CATG	5 cut(s)	97, 103, 400, 566, 615
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	5 cut(s)	57, 215, 348, 375, 590
Fsp4HI	GCNGC	5 cut(s)	57, 215, 348, 375, 590
FspBI	CTAG	2 cut(s)	371, 665
GluI	GCNGC	5 cut(s)	57, 215, 348, 375, 590
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	112
HapII	CCGG	2 cut(s)	308, 579
Hin1II	CATG	5 cut(s)	101, 107, 404, 570, 619
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	2 cut(s)	308, 579
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	3 cut(s)	8, 229, 556
HpyCH4IV	ACGT	2 cut(s)	29, 355
HpyCH4V	TGCA	5 cut(s)	4, 59, 191, 236, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 371
HpyF3I	CTNAG	4 cut(s)	218, 314, 452, 562
HpySE526I	ACGT	2 cut(s)	29, 355
Hsp92II	CATG	5 cut(s)	101, 107, 404, 570, 619
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	328
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	2 cut(s)	43, 361
LweI	GCATC	5 cut(s)	68, 178, 253, 294, 402
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	2 cut(s)	371, 665
MaeII	ACGT	2 cut(s)	29, 355
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	54, 313
MfeI	CAATTG	1 cut(s)	584
MhlI	GDGCHC	3 cut(s)	128, 151, 574
MluCI	AATT	4 cut(s)	290, 383, 525, 584
MnlI	CCTC	2 cut(s)	274, 481
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	2 cut(s)	50, 69
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	217, 347, 660
MspI	CCGG	2 cut(s)	308, 579
MspR9I	CCNGG	2 cut(s)	298, 642
MunI	CAATTG	1 cut(s)	584
MvaI	CCWGG	2 cut(s)	298, 642
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	356, 371
NaeI	GCCGGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	5 cut(s)	101, 107, 404, 570, 619
NmeAIII	GCCGAG	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	2 cut(s)	101, 570
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	611
PflFI	GACNNNGTC	1 cut(s)	340
PflMI	CCANNNNNTGG	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	5 cut(s)	58, 216, 349, 376, 591
Ppu21I	YACGTR	2 cut(s)	30, 356
Psp6I	CCWGG	2 cut(s)	296, 640
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	296, 640
PspPI	GGNCC	1 cut(s)	644
PstI	CTGCAG	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	660
RsaI	GTAC	2 cut(s)	399, 492
RsaNI	GTAC	2 cut(s)	398, 491
RseI	CAYNNNNRTG	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	50, 69
SatI	GCNGC	5 cut(s)	57, 215, 348, 375, 590
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	298, 642
SduI	GDGCHC	3 cut(s)	128, 151, 574
SetI	ASST	9 cut(s)	32, 256, 358, 376, 399, 492, 635, 646, 662
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	5 cut(s)	68, 178, 253, 294, 402
SfcI	CTRYAG	3 cut(s)	21, 375, 655
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SnaBI	TACGTA	1 cut(s)	30
Sse9I	AATT	4 cut(s)	290, 383, 525, 584
SsiI	CCGC	5 cut(s)	12, 215, 345, 347, 589
SspMI	CTAG	2 cut(s)	371, 665
StyD4I	CCNGG	2 cut(s)	296, 640
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	8, 229, 556
TaiI	ACGT	2 cut(s)	32, 358
TasI	AATT	4 cut(s)	290, 383, 525, 584
TauI	GCSGC	3 cut(s)	217, 350, 592
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	50, 69
Tru9I	TTAA	2 cut(s)	50, 69
TscAI	CASTG	3 cut(s)	136, 232, 318
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	2 cut(s)	56, 374
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	222, 447
TspRI	CASTG	3 cut(s)	136, 232, 318
Tth111I	GACNNNGTC	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	644
XceI	RCATGY	2 cut(s)	101, 570
XspI	CTAG	2 cut(s)	371, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.