Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Reverse (-)

9509435 .. 9510866

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10791.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCACTGTAGCGGTGTTTCTATAGATACGTATGCTCTGTGTAGCTCTTTAACTGCTGCATCTTCTATTCAAGATGTTAGCTTCGGTAGAGAGATTCATGCCCATGTGGCAAAGTCAGGGTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCTAAATCATTGCTTATAGGAGATGCAGACCGAATGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCGGGTTATAGTGATGCCAAGTTGTGGGCTGAGGGAGTAGAGTTGATACGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTCACATTGTCCGCGGCGTTACGCGCGTGTGCTGGGCTAGGTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATCCGTTCGGTTTATGATGCGGGAAGTGATGTGTTTCTGCTGAGTTCGTTGATTGAAATGTATGGTAAATGTGGGATGGTAGCAAAGGCTTGGCGAGTTTTCAATTTTGTTGGAAAAGGAGAGGGAAAGAGAGATGTGGTTATGTGGACTTCACTGCTTGGTGTTTATGGCAGGAATGGATACTATAAACAGGTAATAGAACTGTTTAAAGATATGTTGATGGAAGGAATTAGCCCAGACGGGGTGGCATTTGTGACGGTCATCTCAGCTTGTGCTCACACGGGTCAATTGCAGCTTGGCGTTGAGTATTTTGAATCCATGCAACTTGAGTTCAGCTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGTAGAGCTGGTGAATTGGGCAAGGCATGGAAGCTTGTTGATGAGATGCTTAATAAAGGTGACACCAGCTGCACTGTCCCAATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCATGGTGATCTTGAATTGGGTAGACTGGCTGCTCAAAGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTGCTGCTGTCTAATCTATATGCCAGGTTTGGAATGTGGGATGAGATTAACCATTTGAGGGAGTTGATGAAAGAAAAGGGTTTACGGAAAGATGTCGCATATAGCTGGATTGAAGTCCTTTTCTCCCTTTATTTGAGTACATGCAAACTATTGAAACTAGTAAAACAGACCATGGCAGTATTGTTCATGTCTTACTATATGCAGAAGGACTTGCAAATTCAGTTTCCTACTGCAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

408

Amino Acids

45.2

Weight (kDa)

6.08

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	181 - 230	2.4e-10	PPR repeat family
PPR	PF01535	184 - 214	1.7e-06	PPR repeat
PPR_1	PF12854	251 - 280	6.5e-07	PPR repeat
E_motif	PF20431	303 - 365	3.8e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	928
AccII	CGCG	3 cut(s)	347, 357, 359
AciI	CCGC	5 cut(s)	12, 215, 345, 347, 431
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	1197
AfaI	GTAC	2 cut(s)	399, 1120
AfiI	CCNNNNNNNGG	5 cut(s)	273, 652, 877, 878, 1039
AhlI	ACTAGT	1 cut(s)	1138
AjnI	CCWGG	2 cut(s)	754, 1004
Alw21I	GWGCWC	3 cut(s)	128, 151, 688
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	5 cut(s)	56, 703, 861, 935, 985
ApoI	RAATTY	1 cut(s)	1197
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	758
AsuHPI	GGTGA	3 cut(s)	815, 863, 923
AvaII	GGWCC	1 cut(s)	758
BaeGI	GKGCMC	1 cut(s)	949
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
Bbv12I	GWGCWC	3 cut(s)	128, 151, 688
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	43, 715, 848, 922, 972
BccI	CCATC	3 cut(s)	481, 625, 965
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	2 cut(s)	756, 1006
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	1138
BfaI	CTAG	3 cut(s)	371, 779, 1139
BfmI	CTRYAG	3 cut(s)	7, 21, 769
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	7 cut(s)	57, 215, 348, 704, 862, 936, 986
BlsI	GCNGC	7 cut(s)	58, 216, 349, 705, 863, 937, 987
Bme1390I	CCNGG	2 cut(s)	756, 1006
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	758
BmrFI	CCNGG	2 cut(s)	756, 1006
BmsI	GCATC	6 cut(s)	68, 178, 253, 294, 418, 828
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	758, 971
BsaAI	YACGTR	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	345, 1152
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 652, 877, 878, 1039
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	129, 936
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	756, 1006
BseDI	CCNNGG	2 cut(s)	345, 1152
BseGI	GGATG	2 cut(s)	492, 1027
BseLI	CCNNNNNNNGG	5 cut(s)	273, 652, 877, 878, 1039
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	5 cut(s)	209, 270, 305, 443, 690
BseNI	ACTGG	2 cut(s)	129, 936
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	5 cut(s)	43, 715, 848, 922, 972
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	396, 847
Bsh1236I	CGCG	3 cut(s)	347, 357, 359
BsiHKAI	GWGCWC	3 cut(s)	128, 151, 688
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	5 cut(s)	273, 652, 877, 878, 1039
BsmFI	GGGAC	1 cut(s)	854
Bsp1286I	GDGCHC	4 cut(s)	128, 151, 688, 949
Bsp143I	GATC	4 cut(s)	328, 411, 904, 913
Bsp19I	CCATGG	1 cut(s)	1152
BspACI	CCGC	5 cut(s)	12, 215, 345, 347, 431
BspCNI	CTCAG	5 cut(s)	210, 271, 306, 444, 689
BspFNI	CGCG	3 cut(s)	347, 357, 359
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	129, 936
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	345, 1152
BssMI	GATC	4 cut(s)	328, 411, 904, 913
BssT1I	CCWWGG	1 cut(s)	1152
Bst2UI	CCWGG	2 cut(s)	756, 1006
Bst4CI	ACNGT	5 cut(s)	8, 229, 615, 670, 868
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	309, 898
BstDEI	CTNAG	5 cut(s)	218, 279, 314, 452, 676
BstDSI	CCRYGG	2 cut(s)	345, 1152
BstF5I	GGATG	2 cut(s)	492, 1027
BstFNI	CGCG	3 cut(s)	347, 357, 359
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	331, 414, 907, 916
BstMBI	GATC	4 cut(s)	328, 411, 904, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 356, 944
BstNI	CCWGG	2 cut(s)	756, 1006
BstNSI	RCATGY	1 cut(s)	1125
BstSCI	CCNGG	2 cut(s)	754, 1004
BstSFI	CTRYAG	3 cut(s)	7, 21, 769
BstSLI	GKGCMC	1 cut(s)	949
BstSNI	TACGTA	1 cut(s)	30
BstUI	CGCG	3 cut(s)	347, 357, 359
BstV1I	GCAGC	5 cut(s)	43, 715, 848, 922, 972
BsuI	GTATCC	1 cut(s)	584
BtgI	CCRYGG	2 cut(s)	345, 1152
BtsCI	GGATG	2 cut(s)	492, 1027
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	6 cut(s)	4, 136, 225, 311, 563, 864
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	309, 898
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	758
Cfr42I	CCGCGG	1 cut(s)	348
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	398, 1119
CviAII	CATG	9 cut(s)	98, 104, 401, 730, 819, 908, 1122, 1153, 1168
CviQI	GTAC	2 cut(s)	398, 1119
DdeI	CTNAG	5 cut(s)	218, 279, 314, 452, 676
DpnI	GATC	4 cut(s)	330, 413, 906, 915
DpnII	GATC	4 cut(s)	328, 411, 904, 913
DraI	TTTAAA	1 cut(s)	619
Eco105I	TACGTA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	1152
Eco47I	GGWCC	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	754, 1004
EcoT14I	CCWWGG	1 cut(s)	1152
ErhI	CCWWGG	1 cut(s)	1152
FaeI	CATG	9 cut(s)	101, 107, 404, 733, 822, 911, 1125, 1156, 1171
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	9 cut(s)	97, 103, 400, 729, 818, 907, 1121, 1152, 1167
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	7 cut(s)	57, 215, 348, 704, 862, 936, 986
FokI	GGATG	2 cut(s)	499, 1034
Fsp4HI	GCNGC	7 cut(s)	57, 215, 348, 704, 862, 936, 986
FspBI	CTAG	3 cut(s)	371, 779, 1139
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	7 cut(s)	57, 215, 348, 704, 862, 936, 986
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	112
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	9 cut(s)	101, 107, 404, 733, 822, 911, 1125, 1156, 1171
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	3 cut(s)	94, 725, 958
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	815, 863, 923
Hpy166II	GTNNAC	3 cut(s)	558, 929, 1064
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	71, 761, 917
Hpy8I	GTNNAC	3 cut(s)	558, 929, 1064
HpyAV	CCTTC	2 cut(s)	629, 1180
HpyCH4III	ACNGT	5 cut(s)	8, 229, 615, 670, 868
HpyCH4IV	ACGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 356, 944
HpyF3I	CTNAG	5 cut(s)	218, 279, 314, 452, 676
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	9 cut(s)	101, 107, 404, 733, 822, 911, 1125, 1156, 1171
HspAI	GCGC	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	328
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	328, 411, 904, 913
LmnI	GCTCC	2 cut(s)	131, 881
Lsp1109I	GCAGC	5 cut(s)	43, 715, 848, 922, 972
LweI	GCATC	6 cut(s)	68, 178, 253, 294, 418, 828
MabI	ACCWGGT	1 cut(s)	754
MaeI	CTAG	3 cut(s)	371, 779, 1139
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	3 cut(s)	351, 664, 851
MalI	GATC	4 cut(s)	330, 413, 906, 915
MboI	GATC	4 cut(s)	328, 411, 904, 913
MboII	GAAGA	2 cut(s)	54, 313
MfeI	CAATTG	1 cut(s)	698
MhlI	GDGCHC	4 cut(s)	128, 151, 688, 949
MluCI	AATT	7 cut(s)	383, 514, 639, 698, 806, 920, 1197
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	4 cut(s)	274, 526, 972, 1032
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	5 cut(s)	50, 618, 843, 891, 1029
MslI	CAYNNNNRTG	2 cut(s)	102, 969
MspA1I	CMGCKG	4 cut(s)	217, 347, 774, 861
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	756, 1006
MunI	CAATTG	1 cut(s)	698
MvaI	CCWGG	2 cut(s)	756, 1006
MvnI	CGCG	3 cut(s)	347, 357, 359
MwoI	GCNNNNNNNGC	3 cut(s)	107, 356, 944
NaeI	GCCGGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	1152
NdeII	GATC	4 cut(s)	328, 411, 904, 913
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	9 cut(s)	101, 107, 404, 733, 822, 911, 1125, 1156, 1171
NmuCI	GTSAC	2 cut(s)	664, 851
NspI	RCATGY	1 cut(s)	1125
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	94, 725, 958
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	7 cut(s)	58, 216, 349, 705, 863, 937, 987
Ppu21I	YACGTR	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	754, 1004
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	754, 1004
PspPI	GGNCC	1 cut(s)	758
PvuII	CAGCTG	2 cut(s)	774, 861
RsaI	GTAC	2 cut(s)	399, 1120
RsaNI	GTAC	2 cut(s)	398, 1119
RseI	CAYNNNNRTG	2 cut(s)	102, 969
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	50, 618, 843, 891, 1029
SatI	GCNGC	7 cut(s)	57, 215, 348, 704, 862, 936, 986
Sau3AI	GATC	4 cut(s)	328, 411, 904, 913
Sau96I	GGNCC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	756, 1006
SduI	GDGCHC	4 cut(s)	128, 151, 688, 949
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	6 cut(s)	68, 178, 253, 294, 418, 828
SfcI	CTRYAG	3 cut(s)	7, 21, 769
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	2 cut(s)	102, 969
SmlI	CTYRAG	2 cut(s)	737, 950
SmoI	CTYRAG	2 cut(s)	737, 950
SnaBI	TACGTA	1 cut(s)	30
SpeI	ACTAGT	1 cut(s)	1138
Sse9I	AATT	7 cut(s)	383, 514, 639, 698, 806, 920, 1197
SsiI	CCGC	5 cut(s)	12, 215, 345, 347, 431
SspMI	CTAG	3 cut(s)	371, 779, 1139
StyD4I	CCNGG	2 cut(s)	754, 1004
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	5 cut(s)	8, 229, 615, 670, 868
TaiI	ACGT	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	7 cut(s)	383, 514, 639, 698, 806, 920, 1197
TatI	WGTACW	1 cut(s)	1118
TauI	GCSGC	2 cut(s)	217, 350
TfiI	GAWTC	3 cut(s)	94, 725, 958
Tru1I	TTAA	5 cut(s)	50, 618, 843, 891, 1029
Tru9I	TTAA	5 cut(s)	50, 618, 843, 891, 1029
TscAI	CASTG	5 cut(s)	136, 232, 318, 570, 871
TseFI	GTSAC	2 cut(s)	664, 851
TseI	GCWGC	5 cut(s)	56, 703, 861, 935, 985
Tsp45I	GTSAC	2 cut(s)	664, 851
TspDTI	ATGAA	4 cut(s)	86, 222, 1064, 1156
TspGWI	ACGGA	3 cut(s)	313, 404, 1081
TspRI	CASTG	5 cut(s)	136, 232, 318, 570, 871
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	1 cut(s)	1197
XceI	RCATGY	1 cut(s)	1125
XmiI	GTMKAC	1 cut(s)	928
XspI	CTAG	3 cut(s)	371, 779, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.