RchiOBHm_Chr6g0268611

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004842
Physical Location & Seq
Reverse (-)
25512018 .. 25513975
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24097

Sequence Viewer

Length: 1431 bp
ATGTCCAACTATTTCTCTCTATATAGAACACAAAGCTCTGATTTCATTACTCGTTTTATACACCACATTTCTCAAACCAAGAATCAAAGCGCCGTTAAGAAACTCCATGCTCACCTTCTAACAACAGGGTTGCTTATCATATCCCCTCATTTTCACGCTAAACTTATCCTCTCATACACCAAATGCCTTCCCCAACACAACCTCCAGACACTGACCCACTTCTTCAAATGCATGAAACCCAAAAGCGAATTACCATTCAATGTGTTAATGGCTGACTTCTGCCGAAATGGGTTCAGTTTTCTTGCTCTCAAAACCTTATCATTCATGCACAGTAGCGGCGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGGCCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGATCAGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTCACATTGTCTGCGGCATTACGTGCCTGTGCTGGGCTAGCTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATGTGTTTCTGCTGAGTTCATTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCATTGCTTGGTGTGTGTGGTAGAAATGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGTTGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCTGCTTGTGCTCGCACCGGTCAATTGCAGCTCGGCATTGAGTATTTTGAATCCATGGAACTCAAGTTCAGCTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGTAGAGCTGGTGAATTGGGCAAGGCATGGAAGCTCATTGATGAGATGCTTAATAAAGGTCACAGCAGCTGCACTGTCCCTATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCAAGGTGATGTTGAATTGGGTAAACTGGCTGCTCAATGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTTTTGCTATCAAATTTATATGCCAGGTTCGGTATGTGGCATGAGATTAATCATTTGAGGGAGTTGATGAAAGAAAAGGGGTTAAGGAAAGATGTCGGATATAGCCGTATTGAAGTAACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

476

Amino Acids

52.88

Weight (kDa)

8.41

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 289 - 338 5.2e-10 PPR repeat family
PPR PF01535 292 - 322 3.5e-07 PPR repeat
PPR_1 PF12854 359 - 388 2.7e-06 PPR repeat
E_motif PF20431 413 - 473 1.6e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 597
AciI CCGC 3 cut(s) 336, 539, 671
AcsI RAATTY 1 cut(s) 1318
AfaI GTAC 2 cut(s) 723, 930
AfiI CCNNNNNNNGG 5 cut(s) 597, 690, 976, 1201, 1202
AgeI ACCGGT 1 cut(s) 1016
AjnI CCWGG 2 cut(s) 1078, 1328
AloI GAACNNNNNNTCC 2 cut(s) 1049, 1081
AluBI AGCT 9 cut(s) 36, 698, 1030, 1071, 1098, 1124, 1150, 1185, 1208
AluI AGCT 9 cut(s) 36, 698, 1030, 1071, 1098, 1124, 1150, 1185, 1208
Alw21I GWGCWC 3 cut(s) 452, 475, 1012
AlwNI CAGNNNCTG 2 cut(s) 211, 1185
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 6 cut(s) 380, 698, 1027, 1182, 1185, 1259
ApoI RAATTY 1 cut(s) 1318
AseI ATTAAT 1 cut(s) 1353
AsiGI ACCGGT 1 cut(s) 1016
Asp700I GAANNNNTTC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 4 cut(s) 104, 596, 1139, 1247
AsuNHI GCTAGC 1 cut(s) 694
AvaII GGWCC 1 cut(s) 1082
BaeGI GKGCMC 1 cut(s) 1273
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
Bbv12I GWGCWC 3 cut(s) 452, 475, 1012
BbvI GCAGC 6 cut(s) 367, 685, 1039, 1172, 1194, 1246
BccI CCATC 4 cut(s) 839, 949, 968, 1289
BceAI ACGGC 2 cut(s) 77, 1395
BciT130I CCWGG 2 cut(s) 1080, 1330
BciVI GTATCC 1 cut(s) 908
BclI TGATCA 2 cut(s) 618, 652
BfaI CTAG 2 cut(s) 695, 1103
BfmI CTRYAG 3 cut(s) 345, 699, 1093
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 709
BfuI GTATCC 1 cut(s) 908
BisI GCNGC 9 cut(s) 337, 381, 539, 672, 699, 1028, 1183, 1186, 1260
BlsI GCNGC 9 cut(s) 338, 382, 540, 673, 700, 1029, 1184, 1187, 1261
Bme1390I CCNGG 2 cut(s) 1080, 1330
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmrFI CCNGG 2 cut(s) 1080, 1330
BmsI GCATC 6 cut(s) 392, 502, 577, 618, 726, 1152
BmtI GCTAGC 1 cut(s) 698
BpmI CTGGAG 2 cut(s) 188, 436
BpuEI CTTGAG 2 cut(s) 1046, 1295
BsaAI YACGTR 2 cut(s) 354, 680
BsaJI CCNNGG 2 cut(s) 819, 1053
BsaWI WCCGGW 1 cut(s) 1016
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 5 cut(s) 597, 690, 976, 1201, 1202
Bse118I RCCGGY 2 cut(s) 631, 1016
Bse1I ACTGG 2 cut(s) 453, 1260
Bse3DI GCAATG 1 cut(s) 887
BseBI CCWGG 2 cut(s) 1080, 1330
BseDI CCNNGG 2 cut(s) 819, 1053
BseLI CCNNNNNNNGG 5 cut(s) 597, 690, 976, 1201, 1202
BseMI GCAATG 1 cut(s) 887
BseMII CTCAG 4 cut(s) 533, 629, 767, 839
BseNI ACTGG 2 cut(s) 453, 1260
BseSI GKGCMC 1 cut(s) 1273
BseXI GCAGC 6 cut(s) 367, 685, 1039, 1172, 1194, 1246
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 1171
BshFI GGCC 1 cut(s) 519
BshTI ACCGGT 1 cut(s) 1016
BsiHKAI GWGCWC 3 cut(s) 452, 475, 1012
BsiSI CCGG 2 cut(s) 632, 1017
BslFI GGGAC 1 cut(s) 1178
BslI CCNNNNNNNGG 5 cut(s) 597, 690, 976, 1201, 1202
BsmFI GGGAC 1 cut(s) 1178
BsnI GGCC 1 cut(s) 519
Bsp1286I GDGCHC 4 cut(s) 452, 475, 1012, 1273
Bsp143I GATC 3 cut(s) 618, 652, 1228
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 3 cut(s) 336, 539, 671
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 4 cut(s) 534, 630, 768, 838
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 709
BspOI GCTAGC 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 887
BsrFI RCCGGY 2 cut(s) 631, 1016
BsrI ACTGG 2 cut(s) 453, 1260
BssAI RCCGGY 2 cut(s) 631, 1016
BssECI CCNNGG 2 cut(s) 819, 1053
BssMI GATC 3 cut(s) 618, 652, 1228
BssT1I CCWWGG 2 cut(s) 819, 1053
Bst2UI CCWGG 2 cut(s) 1080, 1330
Bst4CI ACNGT 4 cut(s) 332, 553, 994, 1192
BstAPI GCANNNNNTGC 1 cut(s) 680
BstBAI YACGTR 2 cut(s) 354, 680
BstC8I GCNNGC 5 cut(s) 517, 633, 696, 1012, 1222
BstDEI CTNAG 4 cut(s) 542, 638, 776, 825
BstDSI CCRYGG 1 cut(s) 1053
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 621, 655, 1231
BstMBI GATC 3 cut(s) 618, 652, 1228
BstMWI GCNNNNNNNGC 3 cut(s) 680, 695, 1268
BstNI CCWGG 2 cut(s) 1080, 1330
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 1078, 1328
BstSFI CTRYAG 3 cut(s) 345, 699, 1093
BstSLI GKGCMC 1 cut(s) 1273
BstSNI TACGTA 1 cut(s) 354
BstV1I GCAGC 6 cut(s) 367, 685, 1039, 1172, 1194, 1246
BstXI CCANNNNNNTGG 1 cut(s) 499
BsuI GTATCC 1 cut(s) 908
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 1053
BtsIMutI CAGTG 5 cut(s) 209, 460, 549, 635, 1188
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 5 cut(s) 517, 633, 696, 1012, 1222
CaiI CAGNNNCTG 2 cut(s) 211, 1185
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 2 cut(s) 631, 1016
Cfr13I GGNCC 1 cut(s) 1082
CsiI ACCWGGT 1 cut(s) 1078
Csp6I GTAC 2 cut(s) 722, 929
CspAI ACCGGT 1 cut(s) 1016
CviAII CATG 9 cut(s) 107, 232, 325, 422, 428, 725, 1054, 1143, 1346
CviQI GTAC 2 cut(s) 722, 929
DdeI CTNAG 4 cut(s) 542, 638, 776, 825
DpnI GATC 3 cut(s) 620, 654, 1230
DpnII GATC 3 cut(s) 618, 652, 1228
Eco105I TACGTA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 819, 1053
Eco47I GGWCC 1 cut(s) 1082
EcoRII CCWGG 2 cut(s) 1078, 1328
EcoT14I CCWWGG 2 cut(s) 819, 1053
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 819, 1053
FaeI CATG 9 cut(s) 110, 235, 328, 425, 431, 728, 1057, 1146, 1349
FalI AAGNNNNNCTT 4 cut(s) 915, 947, 1055, 1087
FaqI GGGAC 1 cut(s) 1178
FatI CATG 9 cut(s) 106, 231, 324, 421, 427, 724, 1053, 1142, 1345
FbaI TGATCA 2 cut(s) 618, 652
Fnu4HI GCNGC 9 cut(s) 337, 381, 539, 672, 699, 1028, 1183, 1186, 1260
Fsp4HI GCNGC 9 cut(s) 337, 381, 539, 672, 699, 1028, 1183, 1186, 1260
FspBI CTAG 2 cut(s) 695, 1103
GlaI GCGC 1 cut(s) 91
GluI GCNGC 9 cut(s) 337, 381, 539, 672, 699, 1028, 1183, 1186, 1260
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 2 cut(s) 188, 436
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 519
HapII CCGG 2 cut(s) 632, 1017
HhaI GCGC 1 cut(s) 92
Hin1II CATG 9 cut(s) 110, 235, 328, 425, 431, 728, 1057, 1146, 1349
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 82, 1049, 1282
HpaII CCGG 2 cut(s) 632, 1017
HphI GGTGA 4 cut(s) 104, 596, 1139, 1247
Hpy166II GTNNAC 3 cut(s) 600, 882, 1253
Hpy188I TCNGA 4 cut(s) 40, 477, 828, 1403
Hpy188III TCNNGA 3 cut(s) 205, 622, 1085
Hpy8I GTNNAC 3 cut(s) 600, 882, 1253
HpyAV CCTTC 3 cut(s) 125, 197, 953
HpyCH4III ACNGT 4 cut(s) 332, 553, 994, 1192
HpyCH4IV ACGT 2 cut(s) 353, 679
HpyCH4V TGCA 9 cut(s) 231, 328, 383, 515, 560, 701, 1027, 1188, 1224
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 695, 1268
HpyF3I CTNAG 4 cut(s) 542, 638, 776, 825
HpySE526I ACGT 2 cut(s) 353, 679
Hsp92II CATG 9 cut(s) 110, 235, 328, 425, 431, 728, 1057, 1146, 1349
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Ksp22I TGATCA 2 cut(s) 618, 652
Kzo9I GATC 3 cut(s) 618, 652, 1228
LmnI GCTCC 2 cut(s) 455, 1205
Lsp1109I GCAGC 6 cut(s) 367, 685, 1039, 1172, 1194, 1246
LweI GCATC 6 cut(s) 392, 502, 577, 618, 726, 1152
MabI ACCWGGT 1 cut(s) 1078
MaeI CTAG 2 cut(s) 695, 1103
MaeII ACGT 2 cut(s) 353, 679
MaeIII GTNAC 3 cut(s) 988, 1175, 1420
MalI GATC 3 cut(s) 620, 654, 1230
MboI GATC 3 cut(s) 618, 652, 1228
MboII GAAGA 3 cut(s) 214, 378, 637
MfeI CAATTG 1 cut(s) 1022
MhlI GDGCHC 4 cut(s) 452, 475, 1012, 1273
MmeI TCCRAC 2 cut(s) 30, 1381
MnlI CCTC 8 cut(s) 156, 179, 212, 598, 850, 919, 1296, 1356
Mph1103I ATGCAT 1 cut(s) 233
MroNI GCCGGC 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 8 cut(s) 96, 266, 374, 393, 1167, 1215, 1353, 1388
MslI CAYNNNNRTG 2 cut(s) 426, 1293
MspA1I CMGCKG 3 cut(s) 541, 1098, 1185
MspI CCGG 2 cut(s) 632, 1017
MspR9I CCNGG 2 cut(s) 1080, 1330
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 2 cut(s) 1080, 1330
MwoI GCNNNNNNNGC 3 cut(s) 680, 695, 1268
NaeI GCCGGC 1 cut(s) 633
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 3 cut(s) 618, 652, 1228
NgoMIV GCCGGC 1 cut(s) 631
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 9 cut(s) 110, 235, 328, 425, 431, 728, 1057, 1146, 1349
NmeAIII GCCGAG 1 cut(s) 1011
NmuCI GTSAC 2 cut(s) 988, 1175
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 3 cut(s) 82, 1049, 1282
PflMI CCANNNNNTGG 1 cut(s) 597
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 9 cut(s) 338, 382, 540, 673, 700, 1029, 1184, 1187, 1261
Ppu21I YACGTR 2 cut(s) 354, 680
PshBI ATTAAT 1 cut(s) 1353
Psp6I CCWGG 2 cut(s) 1078, 1328
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 2 cut(s) 1078, 1328
PspPI GGNCC 1 cut(s) 1082
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 2 cut(s) 211, 1185
PvuII CAGCTG 2 cut(s) 1098, 1185
RsaI GTAC 2 cut(s) 723, 930
RsaNI GTAC 2 cut(s) 722, 929
RseI CAYNNNNRTG 2 cut(s) 426, 1293
SaqAI TTAA 8 cut(s) 96, 266, 374, 393, 1167, 1215, 1353, 1388
SatI GCNGC 9 cut(s) 337, 381, 539, 672, 699, 1028, 1183, 1186, 1260
Sau3AI GATC 3 cut(s) 618, 652, 1228
Sau96I GGNCC 1 cut(s) 1082
ScrFI CCNGG 2 cut(s) 1080, 1330
SduI GDGCHC 4 cut(s) 452, 475, 1012, 1273
SexAI ACCWGGT 1 cut(s) 1078
SfaNI GCATC 6 cut(s) 392, 502, 577, 618, 726, 1152
SfcI CTRYAG 3 cut(s) 345, 699, 1093
SinI GGWCC 1 cut(s) 1082
SmiMI CAYNNNNRTG 2 cut(s) 426, 1293
SmlI CTYRAG 2 cut(s) 1061, 1274
SmoI CTYRAG 2 cut(s) 1061, 1274
SnaBI TACGTA 1 cut(s) 354
SsiI CCGC 3 cut(s) 336, 539, 671
SspMI CTAG 2 cut(s) 695, 1103
StyD4I CCNGG 2 cut(s) 1078, 1328
StyI CCWWGG 2 cut(s) 819, 1053
TaaI ACNGT 4 cut(s) 332, 553, 994, 1192
TaiI ACGT 2 cut(s) 356, 682
TauI GCSGC 3 cut(s) 339, 541, 674
TfiI GAWTC 3 cut(s) 82, 1049, 1282
Tru1I TTAA 8 cut(s) 96, 266, 374, 393, 1167, 1215, 1353, 1388
Tru9I TTAA 8 cut(s) 96, 266, 374, 393, 1167, 1215, 1353, 1388
TscAI CASTG 5 cut(s) 216, 460, 556, 642, 1195
TseFI GTSAC 2 cut(s) 988, 1175
TseI GCWGC 6 cut(s) 380, 698, 1027, 1182, 1185, 1259
Tsp45I GTSAC 2 cut(s) 988, 1175
TspDTI ATGAA 7 cut(s) 34, 248, 313, 546, 771, 876, 1388
TspRI CASTG 5 cut(s) 216, 460, 556, 642, 1195
Van91I CCANNNNNTGG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 1082
VspI ATTAAT 1 cut(s) 1353
XapI RAATTY 1 cut(s) 1318
XceI RCATGY 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 2 cut(s) 695, 1103
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.