Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Forward (+)

45111181 .. 45112287

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCACAGTAGCGGTGTTTCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTACTGCATCTTCTATTAAAGATGTTGGCTTTGGTAGAAAGATACATGCCCATGTGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGTAGACGAAGTGTTTGATGAAATGCCGATGAGAAACACTGTTTGTGCAGACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGGAGTAGAATTGATCAGGAAGATGCCGGCACTGTGTTTGGAGTATGATCACTTCACATTGTCCGCGGCATTACGTACCTGTGCTGGGCTAGCTGCAATTGAATTGGATAGGCAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCACTGCTTGGTGTGTATGGTAGAAATGGATACTATAAAGAGGTACTAGAACTATTCAAAGATATGTTGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCAGCTTGTGCTCGCACCGGTCAATTGCAGCTCGGCATTGAGTATTTTGAATCCATGGAACTCAAGTTCAGCTTGAAACAAGGTTCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGTAGAGCTGGTGAATTGGGCAAGGCGTGGAAGCTCGTTGATGAGATGCTTAATAAAGGTCACAGCAGCTGCACTGTCCCTATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCAAGGTGATCTTGAATTGGGTAAACTGGCTGCTCAAAGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTTTTACTATCAAATTTATATGTCAGGTTCGGAATGTGGCACGAGATTAATCATTTGAGGGAGTTAATGAAAGAAAAGGGGTTAAGGAAAGATGTCGGATATAGCCGGATTGAAGTCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

334

Amino Acids

36.95

Weight (kDa)

5.76

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	147 - 196	9.6e-11	PPR repeat family
PPR	PF01535	150 - 180	9.7e-08	PPR repeat
PPR_1	PF12854	223 - 246	1.4e-06	PPR repeat
E_motif	PF20431	271 - 331	2.2e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	347
AciI	CCGC	3 cut(s)	12, 345, 347
AcsI	RAATTY	1 cut(s)	892
AfaI	GTAC	2 cut(s)	358, 504
AfiI	CCNNNNNNNGG	5 cut(s)	273, 366, 550, 775, 776
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	8 cut(s)	383, 412, 517, 623, 649, 818, 856, 992
AloI	GAACNNNNNNTCC	2 cut(s)	623, 655
AluBI	AGCT	9 cut(s)	374, 578, 604, 645, 672, 698, 724, 759, 782
AluI	AGCT	9 cut(s)	374, 578, 604, 645, 672, 698, 724, 759, 782
Alw21I	GWGCWC	3 cut(s)	128, 151, 586
AlwNI	CAGNNNCTG	1 cut(s)	759
ApeKI	GCWGC	5 cut(s)	374, 601, 756, 759, 833
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	927
AsiGI	ACCGGT	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	407
AsuHPI	GGTGA	3 cut(s)	272, 713, 821
AsuNHI	GCTAGC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	847
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	920
Bbv12I	GWGCWC	3 cut(s)	128, 151, 586
BbvI	GCAGC	5 cut(s)	361, 613, 746, 768, 820
BccI	CCATC	4 cut(s)	413, 523, 542, 863
BciVI	GTATCC	1 cut(s)	482
BclI	TGATCA	2 cut(s)	294, 328
BfaI	CTAG	3 cut(s)	371, 506, 677
BfmI	CTRYAG	2 cut(s)	21, 667
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	6 cut(s)	348, 375, 602, 757, 760, 834
BlsI	GCNGC	6 cut(s)	349, 376, 603, 758, 761, 835
BmsI	GCATC	4 cut(s)	68, 253, 294, 726
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	2 cut(s)	620, 869
BsaAI	YACGTR	2 cut(s)	30, 356
BsaJI	CCNNGG	2 cut(s)	345, 627
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 366, 550, 775, 776
Bse118I	RCCGGY	2 cut(s)	307, 590
Bse1I	ACTGG	2 cut(s)	129, 834
BseDI	CCNNGG	2 cut(s)	345, 627
BseLI	CCNNNNNNNGG	5 cut(s)	273, 366, 550, 775, 776
BseMII	CTCAG	2 cut(s)	413, 588
BseNI	ACTGG	2 cut(s)	129, 834
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	5 cut(s)	361, 613, 746, 768, 820
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	255, 745
Bsh1236I	CGCG	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	590
BsiHKAI	GWGCWC	3 cut(s)	128, 151, 586
BsiSI	CCGG	3 cut(s)	308, 591, 985
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	5 cut(s)	273, 366, 550, 775, 776
BsmFI	GGGAC	1 cut(s)	752
Bsp1286I	GDGCHC	4 cut(s)	128, 151, 586, 847
Bsp143I	GATC	4 cut(s)	294, 328, 802, 811
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	3 cut(s)	12, 345, 347
BspCNI	CTCAG	2 cut(s)	412, 587
BspFNI	CGCG	1 cut(s)	347
BspOI	GCTAGC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	307, 590
BsrI	ACTGG	2 cut(s)	129, 834
BssAI	RCCGGY	2 cut(s)	307, 590
BssECI	CCNNGG	2 cut(s)	345, 627
BssMI	GATC	4 cut(s)	294, 328, 802, 811
BssSI	CACGAG	1 cut(s)	920
BssT1I	CCWWGG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	920
Bst4CI	ACNGT	5 cut(s)	8, 229, 315, 568, 766
BstBAI	YACGTR	2 cut(s)	30, 356
BstC8I	GCNNGC	5 cut(s)	309, 372, 396, 586, 796
BstDEI	CTNAG	2 cut(s)	399, 574
BstDSI	CCRYGG	2 cut(s)	345, 627
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	4 cut(s)	297, 331, 805, 814
BstMBI	GATC	4 cut(s)	294, 328, 802, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 842
BstNSI	RCATGY	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	21, 667
BstSLI	GKGCMC	1 cut(s)	847
BstSNI	TACGTA	2 cut(s)	30, 356
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	5 cut(s)	361, 613, 746, 768, 820
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	482
BtgI	CCRYGG	2 cut(s)	345, 627
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	5 cut(s)	136, 225, 311, 461, 762
Cac8I	GCNNGC	5 cut(s)	309, 372, 396, 586, 796
CaiI	CAGNNNCTG	1 cut(s)	759
Cfr10I	RCCGGY	2 cut(s)	307, 590
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	357, 503
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	3 cut(s)	98, 104, 628
CviQI	GTAC	2 cut(s)	357, 503
DdeI	CTNAG	2 cut(s)	399, 574
DpnI	GATC	4 cut(s)	296, 330, 804, 813
DpnII	GATC	4 cut(s)	294, 328, 802, 811
Eco105I	TACGTA	2 cut(s)	30, 356
Eco130I	CCWWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	3 cut(s)	101, 107, 631
FalI	AAGNNNNNCTT	4 cut(s)	629, 661, 798, 830
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	3 cut(s)	97, 103, 627
FbaI	TGATCA	2 cut(s)	294, 328
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	348, 375, 602, 757, 760, 834
Fsp4HI	GCNGC	6 cut(s)	348, 375, 602, 757, 760, 834
FspBI	CTAG	3 cut(s)	371, 506, 677
GluI	GCNGC	6 cut(s)	348, 375, 602, 757, 760, 834
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	112
HapII	CCGG	3 cut(s)	308, 591, 985
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	101, 107, 631
HinfI	GANTC	2 cut(s)	623, 856
HpaII	CCGG	3 cut(s)	308, 591, 985
HphI	GGTGA	3 cut(s)	272, 713, 821
Hpy166II	GTNNAC	4 cut(s)	193, 276, 456, 827
Hpy188I	TCNGA	5 cut(s)	153, 402, 661, 911, 977
Hpy188III	TCNNGA	2 cut(s)	298, 815
Hpy8I	GTNNAC	4 cut(s)	193, 276, 456, 827
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	5 cut(s)	8, 229, 315, 568, 766
HpyCH4IV	ACGT	2 cut(s)	29, 355
HpyCH4V	TGCA	7 cut(s)	4, 59, 236, 377, 601, 762, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 842
HpyF3I	CTNAG	2 cut(s)	399, 574
HpySE526I	ACGT	2 cut(s)	29, 355
Hsp92II	CATG	3 cut(s)	101, 107, 631
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	2 cut(s)	294, 328
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	294, 328, 802, 811
LmnI	GCTCC	2 cut(s)	131, 779
Lsp1109I	GCAGC	5 cut(s)	361, 613, 746, 768, 820
LweI	GCATC	4 cut(s)	68, 253, 294, 726
MaeI	CTAG	3 cut(s)	371, 506, 677
MaeII	ACGT	2 cut(s)	29, 355
MaeIII	GTNAC	3 cut(s)	562, 749, 994
MalI	GATC	4 cut(s)	296, 330, 804, 813
MboI	GATC	4 cut(s)	294, 328, 802, 811
MboII	GAAGA	2 cut(s)	54, 313
MfeI	CAATTG	2 cut(s)	378, 596
MhlI	GDGCHC	4 cut(s)	128, 151, 586, 847
MmeI	TCCRAC	1 cut(s)	955
MnlI	CCTC	5 cut(s)	274, 424, 493, 870, 930
MroNI	GCCGGC	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	7 cut(s)	50, 69, 741, 789, 927, 944, 962
MslI	CAYNNNNRTG	2 cut(s)	102, 867
MspA1I	CMGCKG	3 cut(s)	347, 672, 759
MspI	CCGG	3 cut(s)	308, 591, 985
MunI	CAATTG	2 cut(s)	378, 596
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	371, 842
NaeI	GCCGGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	4 cut(s)	294, 328, 802, 811
NgoMIV	GCCGGC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	101, 107, 631
NmeAIII	GCCGAG	1 cut(s)	585
NmuCI	GTSAC	3 cut(s)	562, 749, 994
NspI	RCATGY	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	623, 856
PflMI	CCANNNNNTGG	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	6 cut(s)	349, 376, 603, 758, 761, 835
Ppu21I	YACGTR	2 cut(s)	30, 356
PshBI	ATTAAT	1 cut(s)	927
PspFI	CCCAGC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	759
PvuII	CAGCTG	2 cut(s)	672, 759
RsaI	GTAC	2 cut(s)	358, 504
RsaNI	GTAC	2 cut(s)	357, 503
RseI	CAYNNNNRTG	2 cut(s)	102, 867
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	7 cut(s)	50, 69, 741, 789, 927, 944, 962
SatI	GCNGC	6 cut(s)	348, 375, 602, 757, 760, 834
Sau3AI	GATC	4 cut(s)	294, 328, 802, 811
SduI	GDGCHC	4 cut(s)	128, 151, 586, 847
SfaNI	GCATC	4 cut(s)	68, 253, 294, 726
SfcI	CTRYAG	2 cut(s)	21, 667
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	102, 867
SmlI	CTYRAG	2 cut(s)	635, 848
SmoI	CTYRAG	2 cut(s)	635, 848
SnaBI	TACGTA	2 cut(s)	30, 356
SsiI	CCGC	3 cut(s)	12, 345, 347
SspMI	CTAG	3 cut(s)	371, 506, 677
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	5 cut(s)	8, 229, 315, 568, 766
TaiI	ACGT	2 cut(s)	32, 358
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	623, 856
Tru1I	TTAA	7 cut(s)	50, 69, 741, 789, 927, 944, 962
Tru9I	TTAA	7 cut(s)	50, 69, 741, 789, 927, 944, 962
TscAI	CASTG	5 cut(s)	136, 232, 318, 468, 769
TseFI	GTSAC	3 cut(s)	562, 749, 994
TseI	GCWGC	5 cut(s)	374, 601, 756, 759, 833
Tsp45I	GTSAC	3 cut(s)	562, 749, 994
TspDTI	ATGAA	2 cut(s)	222, 962
TspRI	CASTG	5 cut(s)	136, 232, 318, 468, 769
Van91I	CCANNNNNTGG	1 cut(s)	273
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	371, 506, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.