Rh6DG154200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004842
Physical Location & Seq
Reverse (-)
23099069 .. 23099755
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG154200.1

Sequence Viewer

Length: 687 bp
ATGGCTGACTTCTGCCGAAATGGGTTCAGTTTTCTTGCTCTGAAAACCTTATCATTCATGCACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTGAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTCGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGGCCAAGTGTTGGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGCAGAATTGATCAGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTCACATTGTCCACGGCATTACGTGCCTGTGCTGGGCTAGCTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATGTTTCTGCTGAGTTCATTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGAAAAGAGATGTGGTTATGTGGACTTCATTGCTTGGTGTGTGTGGTAGAAATGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

228

Amino Acids

24.81

Weight (kDa)

6.58

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 93 - 141 6.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 259, 330
AciI CCGC 2 cut(s) 69, 272
AfaI GTAC 2 cut(s) 456, 662
AfiI CCNNNNNNNGG 3 cut(s) 259, 330, 423
AgsI TTSAA 6 cut(s) 128, 440, 524, 571, 667, 675
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw21I GWGCWC 2 cut(s) 185, 208
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 113, 341, 431
Asp700I GAANNNNTTC 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
Bbv12I GWGCWC 2 cut(s) 185, 208
BbvI GCAGC 3 cut(s) 100, 353, 418
BccI CCATC 1 cut(s) 572
BceAI ACGGC 1 cut(s) 420
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 2 cut(s) 351, 385
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 2 cut(s) 78, 432
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 4 cut(s) 114, 272, 342, 432
BlsI GCNGC 4 cut(s) 115, 273, 343, 433
BmsI GCATC 5 cut(s) 125, 235, 310, 351, 459
BmtI GCTAGC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 169
BsaAI YACGTR 2 cut(s) 87, 413
BsaJI CCNNGG 2 cut(s) 402, 552
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 330, 423
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 402, 552
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 259, 330, 423
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 4 cut(s) 266, 362, 500, 572
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 100, 353, 418
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 2 cut(s) 185, 208
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 259, 330, 423
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 185, 208
Bsp143I GATC 2 cut(s) 351, 385
BspACI CCGC 2 cut(s) 69, 272
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 4 cut(s) 267, 363, 501, 571
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 402, 552
BssMI GATC 2 cut(s) 351, 385
BssT1I CCWWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 65, 286
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 2 cut(s) 87, 413
BstC8I GCNNGC 3 cut(s) 250, 366, 429
BstDEI CTNAG 4 cut(s) 275, 371, 509, 558
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 354, 388
BstMBI GATC 2 cut(s) 351, 385
BstMWI GCNNNNNNNGC 2 cut(s) 413, 428
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 78, 432
BstSNI TACGTA 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 100, 353, 418
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 3 cut(s) 193, 282, 368
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 3 cut(s) 250, 366, 429
Cfr10I RCCGGY 1 cut(s) 364
Csp6I GTAC 2 cut(s) 455, 661
CviAII CATG 4 cut(s) 58, 155, 161, 458
CviJI RGCY 9 cut(s) 5, 138, 177, 252, 427, 431, 544, 551, 557
CviKI_1 RGCY 9 cut(s) 5, 138, 177, 252, 427, 431, 544, 551, 557
CviQI GTAC 2 cut(s) 455, 661
DdeI CTNAG 4 cut(s) 275, 371, 509, 558
DpnI GATC 2 cut(s) 353, 387
DpnII GATC 2 cut(s) 351, 385
Eco105I TACGTA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 4 cut(s) 61, 158, 164, 461
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 4 cut(s) 57, 154, 160, 457
FbaI TGATCA 2 cut(s) 351, 385
Fnu4HI GCNGC 4 cut(s) 114, 272, 342, 432
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 114, 272, 342, 432
FspBI CTAG 1 cut(s) 428
GluI GCNGC 4 cut(s) 114, 272, 342, 432
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 365
Hin1II CATG 4 cut(s) 61, 158, 164, 461
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 333, 402, 614
Hpy188I TCNGA 3 cut(s) 42, 210, 561
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 333, 402, 614
HpyCH4III ACNGT 2 cut(s) 65, 286
HpyCH4IV ACGT 2 cut(s) 86, 412
HpyCH4V TGCA 5 cut(s) 61, 116, 248, 293, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 428
HpyF3I CTNAG 4 cut(s) 275, 371, 509, 558
HpySE526I ACGT 2 cut(s) 86, 412
Hsp92II CATG 4 cut(s) 61, 158, 164, 461
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Ksp22I TGATCA 2 cut(s) 351, 385
Kzo9I GATC 2 cut(s) 351, 385
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 3 cut(s) 100, 353, 418
LweI GCATC 5 cut(s) 125, 235, 310, 351, 459
MaeI CTAG 1 cut(s) 428
MaeII ACGT 2 cut(s) 86, 412
MalI GATC 2 cut(s) 353, 387
MboI GATC 2 cut(s) 351, 385
MboII GAAGA 3 cut(s) 111, 140, 370
MhlI GDGCHC 2 cut(s) 185, 208
MluCI AATT 3 cut(s) 347, 440, 571
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 331, 583, 651
MroNI GCCGGC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 413, 428
NaeI GCCGGC 1 cut(s) 366
NdeII GATC 2 cut(s) 351, 385
NgoMIV GCCGGC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 4 cut(s) 61, 158, 164, 461
NspI RCATGY 1 cut(s) 158
PdiI GCCGGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 566
PflMI CCANNNNNTGG 2 cut(s) 259, 330
PkrI GCNGC 4 cut(s) 115, 273, 343, 433
Ppu21I YACGTR 2 cut(s) 87, 413
PspFI CCCAGC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 436
RsaI GTAC 2 cut(s) 456, 662
RsaNI GTAC 2 cut(s) 455, 661
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 4 cut(s) 114, 272, 342, 432
Sau3AI GATC 2 cut(s) 351, 385
SduI GDGCHC 2 cut(s) 185, 208
SetI ASST 7 cut(s) 50, 89, 313, 415, 433, 456, 662
SfaNI GCATC 5 cut(s) 125, 235, 310, 351, 459
SfcI CTRYAG 2 cut(s) 78, 432
SmiMI CAYNNNNRTG 1 cut(s) 159
SnaBI TACGTA 1 cut(s) 87
Sse9I AATT 3 cut(s) 347, 440, 571
SsiI CCGC 2 cut(s) 69, 272
SspMI CTAG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 65, 286
TaiI ACGT 2 cut(s) 89, 415
TasI AATT 3 cut(s) 347, 440, 571
TauI GCSGC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 3 cut(s) 193, 289, 375
TseI GCWGC 3 cut(s) 113, 341, 431
TspDTI ATGAA 4 cut(s) 46, 279, 504, 608
TspRI CASTG 3 cut(s) 193, 289, 375
Van91I CCANNNNNTGG 2 cut(s) 259, 330
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.