Rmu_sc0005121.1_g000006

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005121.1
Physical Location & Seq
Reverse (-)
36903 .. 39647
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005121.1_g000006.1.cds

Sequence Viewer

Length: 1566 bp
atggctgacttctgccgaaatgggttcagttttcttgctctcaaaacctcatcattcatgcacagtagcggtgttcctatagatacgtatgctttgtgtagttctttaactgctgcatcttctattaaagatgttggcttcggtagaaagatacatgcccatgtggtaaagtcaggctggtgctccagtgtttttgttgggagtgctctgattgacttgtatgccaagtcattggttataggagatgcagaccaagtctttgatgaaatgccgctgagaaacactgtttgtgcaaacgcacttttatcaggttatggtgatgccaagttgtggacagaggcagtagaattgaccaggaagatgccggcactgagtttggagtatgatcacttgacattgtccgcggcattacgtgcctgtgctgggctagctgcagttgaattgggtaggcaggtacatggttatttgatgcgttcggtttatgatgtgggaagtgatatgtttctgctgagttccttgattgaaatgtatggtaaatgtgggctggtagccaaggctcagaaagttttaaattttgatggaaaaggagaggggaaaagagacgtggttatgtggacttcactgcttggtgtgtatggtagaaatggatactataaagaggtacttgaactattcaaagatatgatgatggaaggaattagcccagatggggtggcatttgtgacagtcatctcagcttgtgctcgcaccggtcaattgcggctcggcattgagtattttgaatccatggaactcaagttcagcttgacaccaggtccagaacactacagctgtctagttgatttgctgtgtagagctggtgaattaggcaaggcatggaagctcgttgatgagatgcttaataaaggtcacagcagctgcactgtccctatgtggggagctttgcttaatgcttgcaaagatcaaggtgatcttgaattgggtaaactggctgctcaaagggcacttgagttgaatcctcataatgatggtatttatgttttgctatcaaatttatatgccaggttcggggagcttcgagaccccgcagtggtctgcaacttcgcgccagaaaccctaaacgagagaacagctcccatgagcaatgattcatcttccgtaatgaacggtccagatcagcctgacacaagcgcgcccgcgcccaaaccacagcgcaccaagatcgttaaactcgaagacactgaaaagaagatttttcataagaaactcaaagatgttgagattagtgttccgatagtgtatggcaatattgcattctggctcggtaagaaggcaagcgagtaccaatcacataagtggactgtgtatgttcgtggggcaaccaatgaggatctgggagtggtgataaagcgtgttgttttccagttgcattccagtttcaataatcccacaagggtggttgagtcaccgccatttgagttatctgaatgtggctggggtgaatttgaaatcgcaattacactatttttccacagtgatgtttgcgagaagccattaaacttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.33

Weight (kDa)

5.99

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 4 cut(s) 404, 1106, 1193, 1199
AciI CCGC 8 cut(s) 69, 272, 402, 404, 760, 1086, 1197, 1469
AclWI GGATC 1 cut(s) 1398
AcsI RAATTY 3 cut(s) 571, 1051, 1502
AfaI GTAC 3 cut(s) 456, 663, 1343
AfiI CCNNNNNNNGG 7 cut(s) 330, 423, 709, 934, 935, 1068, 1090
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 9 cut(s) 440, 524, 668, 676, 782, 977, 1015, 1441, 1508
AhdI GACNNNNNGTC 1 cut(s) 813
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 3 cut(s) 353, 811, 1061
AleI CACNNNNGTG 2 cut(s) 1354, 1454
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
Alw21I GWGCWC 3 cut(s) 185, 208, 745
Alw26I GTCTC 2 cut(s) 594, 1074
AlwI GGATC 1 cut(s) 1398
AlwNI CAGNNNCTG 1 cut(s) 918
ApeKI GCWGC 5 cut(s) 113, 431, 915, 918, 992
ApoI RAATTY 3 cut(s) 571, 1051, 1502
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AsiGI ACCGGT 1 cut(s) 749
AspLEI GCGC 5 cut(s) 1108, 1193, 1195, 1201, 1215
AspS9I GGNCC 2 cut(s) 815, 1169
AsuHPI GGTGA 6 cut(s) 329, 872, 980, 1414, 1458, 1511
AsuNHI GCTAGC 1 cut(s) 427
AvaII GGWCC 2 cut(s) 815, 1169
BaeGI GKGCMC 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 3 cut(s) 185, 208, 745
BbvI GCAGC 5 cut(s) 100, 418, 905, 927, 979
BccI CCATC 4 cut(s) 572, 682, 701, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1204, 1238
BciT130I CCWGG 3 cut(s) 355, 813, 1063
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 594, 1074
BfaI CTAG 2 cut(s) 428, 836
BfmI CTRYAG 3 cut(s) 78, 432, 826
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 8 cut(s) 114, 272, 405, 432, 761, 916, 919, 993
BlsI GCNGC 8 cut(s) 115, 273, 406, 433, 762, 917, 920, 994
Bme1390I CCNGG 3 cut(s) 355, 813, 1063
Bme18I GGWCC 2 cut(s) 815, 1169
BmeRI GACNNNNNGTC 1 cut(s) 813
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 815, 1169
BmrFI CCNGG 3 cut(s) 355, 813, 1063
BmsI GCATC 6 cut(s) 125, 235, 310, 351, 459, 885
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 1242
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 779, 1028
BsaAI YACGTR 2 cut(s) 87, 413
BsaI GGTCTC 1 cut(s) 1074
BsaJI CCNNGG 3 cut(s) 402, 552, 786
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 7 cut(s) 330, 423, 709, 934, 935, 1068, 1090
Bse118I RCCGGY 2 cut(s) 364, 749
Bse1I ACTGG 4 cut(s) 186, 993, 1423, 1434
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 3 cut(s) 355, 813, 1063
BseDI CCNNGG 3 cut(s) 402, 552, 786
BseLI CCNNNNNNNGG 7 cut(s) 330, 423, 709, 934, 935, 1068, 1090
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 5 cut(s) 266, 362, 500, 572, 747
BseNI ACTGG 4 cut(s) 186, 993, 1423, 1434
BsePI GCGCGC 1 cut(s) 1191
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 5 cut(s) 100, 418, 905, 927, 979
BseYI CCCAGC 2 cut(s) 422, 1494
BsgI GTGCAG 1 cut(s) 904
Bsh1236I CGCG 4 cut(s) 404, 1106, 1193, 1199
BshTI ACCGGT 1 cut(s) 749
BsiHKAI GWGCWC 3 cut(s) 185, 208, 745
BsiSI CCGG 2 cut(s) 365, 750
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 7 cut(s) 330, 423, 709, 934, 935, 1068, 1090
BsmAI GTCTC 2 cut(s) 594, 1074
BsmBI CGTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 911
BsmI GAATGC 2 cut(s) 1313, 1429
Bso31I GGTCTC 1 cut(s) 1074
Bsp1286I GDGCHC 4 cut(s) 185, 208, 745, 1006
Bsp143I GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
Bsp19I CCATGG 1 cut(s) 786
BspACI CCGC 8 cut(s) 69, 272, 402, 404, 760, 1086, 1197, 1469
BspCNI CTCAG 5 cut(s) 267, 363, 501, 571, 746
BspFNI CGCG 4 cut(s) 404, 1106, 1193, 1199
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 1398
BspTNI GGTCTC 1 cut(s) 1074
BsrDI GCAATG 1 cut(s) 1150
BsrFI RCCGGY 2 cut(s) 364, 749
BsrI ACTGG 4 cut(s) 186, 993, 1423, 1434
BssAI RCCGGY 2 cut(s) 364, 749
BssECI CCNNGG 3 cut(s) 402, 552, 786
BssHII GCGCGC 1 cut(s) 1191
BssMI GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
BssT1I CCWWGG 2 cut(s) 552, 786
Bst2UI CCWGG 3 cut(s) 355, 813, 1063
Bst4CI ACNGT 7 cut(s) 65, 286, 727, 925, 1169, 1363, 1535
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 2 cut(s) 87, 413
BstC8I GCNNGC 7 cut(s) 366, 429, 745, 955, 1193, 1197, 1336
BstDEI CTNAG 5 cut(s) 275, 371, 509, 558, 733
BstDSI CCRYGG 2 cut(s) 402, 786
BstFNI CGCG 4 cut(s) 404, 1106, 1193, 1199
BstHHI GCGC 5 cut(s) 1108, 1193, 1195, 1201, 1215
BstKTI GATC 6 cut(s) 388, 964, 973, 1177, 1224, 1393
BstMAI GTCTC 2 cut(s) 594, 1074
BstMBI GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
BstMWI GCNNNNNNNGC 3 cut(s) 413, 428, 1001
BstNI CCWGG 3 cut(s) 355, 813, 1063
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 353, 811, 1061
BstSFI CTRYAG 3 cut(s) 78, 432, 826
BstSLI GKGCMC 1 cut(s) 1006
BstSNI TACGTA 1 cut(s) 87
BstUI CGCG 4 cut(s) 404, 1106, 1193, 1199
BstV1I GCAGC 5 cut(s) 100, 418, 905, 927, 979
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 1 cut(s) 1390
BstXI CCANNNNNNTGG 2 cut(s) 232, 1456
BstYI RGATCY 1 cut(s) 1390
BsuI GTATCC 1 cut(s) 641
BtgI CCRYGG 2 cut(s) 402, 786
BtrI CACGTC 1 cut(s) 604
BtsI GCAGTG 2 cut(s) 620, 1095
BtsIMutI CAGTG 8 cut(s) 193, 282, 368, 620, 921, 1095, 1239, 1540
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 7 cut(s) 366, 429, 745, 955, 1193, 1197, 1336
CaiI CAGNNNCTG 1 cut(s) 918
CfoI GCGC 5 cut(s) 1108, 1193, 1195, 1201, 1215
Cfr10I RCCGGY 2 cut(s) 364, 749
Cfr13I GGNCC 2 cut(s) 815, 1169
Cfr42I CCGCGG 1 cut(s) 405
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 3 cut(s) 455, 662, 1342
CspAI ACCGGT 1 cut(s) 749
CviAII CATG 7 cut(s) 58, 155, 161, 458, 787, 876, 1138
CviQI GTAC 3 cut(s) 455, 662, 1342
DdeI CTNAG 5 cut(s) 275, 371, 509, 558, 733
DpnI GATC 6 cut(s) 387, 963, 972, 1176, 1223, 1392
DpnII GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
DraI TTTAAA 1 cut(s) 570
DriI GACNNNNNGTC 1 cut(s) 813
Eam1105I GACNNNNNGTC 1 cut(s) 813
Eco105I TACGTA 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 552, 786
Eco31I GGTCTC 1 cut(s) 1074
Eco47I GGWCC 2 cut(s) 815, 1169
EcoRII CCWGG 3 cut(s) 353, 811, 1061
EcoT14I CCWWGG 2 cut(s) 552, 786
ErhI CCWWGG 2 cut(s) 552, 786
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 7 cut(s) 61, 158, 164, 461, 790, 879, 1141
FalI AAGNNNNNCTT 6 cut(s) 648, 680, 788, 820, 957, 989
FaqI GGGAC 1 cut(s) 911
FatI CATG 7 cut(s) 57, 154, 160, 457, 786, 875, 1137
FauI CCCGC 2 cut(s) 1093, 1204
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 8 cut(s) 114, 272, 405, 432, 761, 916, 919, 993
Fsp4HI GCNGC 8 cut(s) 114, 272, 405, 432, 761, 916, 919, 993
FspBI CTAG 2 cut(s) 428, 836
GlaI GCGC 5 cut(s) 1107, 1192, 1194, 1200, 1214
GluI GCNGC 8 cut(s) 114, 272, 405, 432, 761, 916, 919, 993
GsaI CCCAGC 2 cut(s) 426, 1498
GsuI CTGGAG 1 cut(s) 169
HapII CCGG 2 cut(s) 365, 750
HhaI GCGC 5 cut(s) 1108, 1193, 1195, 1201, 1215
Hin1II CATG 7 cut(s) 61, 158, 164, 461, 790, 879, 1141
Hin6I GCGC 5 cut(s) 1106, 1191, 1193, 1199, 1213
HinP1I GCGC 5 cut(s) 1106, 1191, 1193, 1199, 1213
HinfI GANTC 4 cut(s) 782, 1015, 1148, 1463
HpaII CCGG 2 cut(s) 365, 750
HphI GGTGA 6 cut(s) 329, 872, 980, 1414, 1458, 1511
Hpy166II GTNNAC 4 cut(s) 333, 615, 986, 1359
Hpy188I TCNGA 4 cut(s) 210, 561, 1293, 1486
Hpy188III TCNNGA 4 cut(s) 818, 974, 1079, 1172
Hpy8I GTNNAC 4 cut(s) 333, 615, 986, 1359
HpyAV CCTTC 2 cut(s) 686, 1324
HpyCH4III ACNGT 7 cut(s) 65, 286, 727, 925, 1169, 1363, 1535
HpyCH4IV ACGT 3 cut(s) 86, 412, 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 428, 1001
HpyF3I CTNAG 5 cut(s) 275, 371, 509, 558, 733
HpySE526I ACGT 3 cut(s) 86, 412, 603
Hsp92II CATG 7 cut(s) 61, 158, 164, 461, 790, 879, 1141
HspAI GCGC 5 cut(s) 1106, 1191, 1193, 1199, 1213
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 385
KspI CCGCGG 1 cut(s) 405
Kzo9I GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
LmnI GCTCC 4 cut(s) 188, 938, 1072, 1138
Lsp1109I GCAGC 5 cut(s) 100, 418, 905, 927, 979
LweI GCATC 6 cut(s) 125, 235, 310, 351, 459, 885
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 2 cut(s) 428, 836
MaeII ACGT 3 cut(s) 86, 412, 603
MaeIII GTNAC 3 cut(s) 721, 908, 1464
MalI GATC 6 cut(s) 387, 963, 972, 1176, 1223, 1392
MboI GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
MboII GAAGA 5 cut(s) 111, 370, 1146, 1247, 1261
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 1 cut(s) 1390
MhlI GDGCHC 4 cut(s) 185, 208, 745, 1006
MlyI GAGTC 1 cut(s) 1472
MnlI CCTC 6 cut(s) 58, 331, 583, 652, 1029, 1381
MroNI GCCGGC 1 cut(s) 364
MseI TTAA 7 cut(s) 107, 126, 569, 900, 948, 1227, 1556
MslI CAYNNNNRTG 5 cut(s) 159, 1026, 1354, 1454, 1536
MspA1I CMGCKG 4 cut(s) 274, 404, 831, 918
MspI CCGG 2 cut(s) 365, 750
MspR9I CCNGG 3 cut(s) 355, 813, 1063
MunI CAATTG 1 cut(s) 755
Mva1269I GAATGC 2 cut(s) 1313, 1429
MvaI CCWGG 3 cut(s) 355, 813, 1063
MvnI CGCG 4 cut(s) 404, 1106, 1193, 1199
MwoI GCNNNNNNNGC 3 cut(s) 413, 428, 1001
NaeI GCCGGC 1 cut(s) 366
NcoI CCATGG 1 cut(s) 786
NdeII GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
NgoMIV GCCGGC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 7 cut(s) 61, 158, 164, 461, 790, 879, 1141
NmeAIII GCCGAG 1 cut(s) 744
NmuCI GTSAC 3 cut(s) 721, 908, 1464
NspI RCATGY 1 cut(s) 158
OliI CACNNNNGTG 2 cut(s) 1354, 1454
PauI GCGCGC 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 1 cut(s) 1230
PctI GAATGC 2 cut(s) 1313, 1429
PdiI GCCGGC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 782, 1015, 1148
PflFI GACNNNGTC 2 cut(s) 254, 397
PflMI CCANNNNNTGG 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 8 cut(s) 115, 273, 406, 433, 762, 917, 920, 994
PleI GAGTC 1 cut(s) 1471
PpsI GAGTC 1 cut(s) 1471
Ppu21I YACGTR 2 cut(s) 87, 413
Psp6I CCWGG 3 cut(s) 353, 811, 1061
PspFI CCCAGC 2 cut(s) 422, 1494
PspGI CCWGG 3 cut(s) 353, 811, 1061
PspPI GGNCC 2 cut(s) 815, 1169
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 918
PsuI RGATCY 1 cut(s) 1390
PsyI GACNNNGTC 2 cut(s) 254, 397
PteI GCGCGC 1 cut(s) 1191
PvuII CAGCTG 2 cut(s) 831, 918
RsaI GTAC 3 cut(s) 456, 663, 1343
RsaNI GTAC 3 cut(s) 455, 662, 1342
RseI CAYNNNNRTG 5 cut(s) 159, 1026, 1354, 1454, 1536
SacII CCGCGG 1 cut(s) 405
SaqAI TTAA 7 cut(s) 107, 126, 569, 900, 948, 1227, 1556
SatI GCNGC 8 cut(s) 114, 272, 405, 432, 761, 916, 919, 993
Sau3AI GATC 6 cut(s) 385, 961, 970, 1174, 1221, 1390
Sau96I GGNCC 2 cut(s) 815, 1169
SchI GAGTC 1 cut(s) 1472
ScrFI CCNGG 3 cut(s) 355, 813, 1063
SduI GDGCHC 4 cut(s) 185, 208, 745, 1006
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 6 cut(s) 125, 235, 310, 351, 459, 885
SfcI CTRYAG 3 cut(s) 78, 432, 826
Sfr303I CCGCGG 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 405
SinI GGWCC 2 cut(s) 815, 1169
SmiMI CAYNNNNRTG 5 cut(s) 159, 1026, 1354, 1454, 1536
SmlI CTYRAG 2 cut(s) 794, 1007
SmoI CTYRAG 2 cut(s) 794, 1007
SnaBI TACGTA 1 cut(s) 87
SsiI CCGC 8 cut(s) 69, 272, 402, 404, 760, 1086, 1197, 1469
SspI AATATT 1 cut(s) 1309
SspMI CTAG 2 cut(s) 428, 836
StyD4I CCNGG 3 cut(s) 353, 811, 1061
StyI CCWWGG 2 cut(s) 552, 786
TaaI ACNGT 7 cut(s) 65, 286, 727, 925, 1169, 1363, 1535
TaiI ACGT 3 cut(s) 89, 415, 606
TaqI TCGA 2 cut(s) 1078, 1233
TauI GCSGC 3 cut(s) 274, 407, 763
TfiI GAWTC 3 cut(s) 782, 1015, 1148
Tru1I TTAA 7 cut(s) 107, 126, 569, 900, 948, 1227, 1556
Tru9I TTAA 7 cut(s) 107, 126, 569, 900, 948, 1227, 1556
TscAI CASTG 8 cut(s) 193, 289, 375, 627, 928, 1095, 1246, 1540
TseFI GTSAC 3 cut(s) 721, 908, 1464
TseI GCWGC 5 cut(s) 113, 431, 915, 918, 992
Tsp45I GTSAC 3 cut(s) 721, 908, 1464
TspDTI ATGAA 5 cut(s) 46, 279, 1140, 1178, 1247
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 8 cut(s) 193, 289, 375, 627, 928, 1095, 1246, 1540
Tth111I GACNNNGTC 2 cut(s) 254, 397
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 815, 1169
XapI RAATTY 3 cut(s) 571, 1051, 1502
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 1390
XspI CTAG 2 cut(s) 428, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.