Rh6AG163800

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
26073379 .. 26075935
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG163800.1

Sequence Viewer

Length: 1566 bp
ATGATACATGCCCATGTGGAACACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTGAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGGCCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGATCAGGAAGATACCAGCACTGAGTTTGGAGTATGATCACTTCACATTGTCCGCGGCATTACGTGCCTGTGCTGGGCTAGTTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATGTTTCTGCTGAGTTCATTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCACTGCTTGGTTTGTGTGGTAGAATTGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGTTGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCTGCTTGTACTCACACCGGTCAATTGCAGCTCGGCATGGAGTATTTTGAATCCATGGAACTCAAGTTCTACTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGTTGTGTAGAGCTGGTGAATTGGGCAAGGAGTGGAAGCTTGTTGATGAGATGCTTAATAAAGGTCACAGCAGCTCCACTGTCCCTATGTGGGGAGCTTTGCTTAATGCTTGCAAAGATCAAGGTTCGCTCGGTAAGAAGGCAAGCGAGTATCAATCACATAAGTGGACTGAGTATGTTCGTGGGGAAACTAATGAGGATCTACGAGTGGTGATAAAGCGTGTTGTTTTCCAGTTGCATTCCAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCTCCATTTGAGTTATCTGAATGTGGCTGGGGTGAGTTTGAAATCGCAATTACACTATTTTTCCACAGTGATGTTTGCGAGAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCAAGAAGATGAATCTGGTCCTATGTTGACCAAGAAACCTGTGGTCGTGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCACATCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGTCTCCTCCTGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAGCAGATGAGCATTCCTCTCTCTGAAATTTCTGGATATATAATAAGGAACTTAGACCTGATTGATGTTATAAATTTTGTTGCATTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.86

Weight (kDa)

5.59

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 187 - 235 1.9e-08 PPR repeat family
PPR PF01535 190 - 220 9.4e-06 PPR repeat
YEATS PF03366 320 - 400 1.2e-28 YEATS family
pYEATS PF20305 324 - 383 1.3e-09 prokaryotic YEATS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1544
Acc36I ACCTGC 2 cut(s) 403, 1345
AccB7I CCANNNNNTGG 1 cut(s) 291
AccII CGCG 1 cut(s) 365
AciI CCGC 4 cut(s) 30, 233, 363, 365
AclWI GGATC 2 cut(s) 1011, 1364
AcsI RAATTY 3 cut(s) 1429, 1500, 1546
AcuI CTGAAG 1 cut(s) 1263
AfaI GTAC 4 cut(s) 417, 624, 703, 1196
AfiI CCNNNNNNNGG 5 cut(s) 291, 384, 670, 895, 896
AgeI ACCGGT 1 cut(s) 710
AjnI CCWGG 1 cut(s) 772
AleI CACNNNNGTG 2 cut(s) 967, 1067
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
Alw21I GWGCWC 2 cut(s) 146, 169
Alw26I GTCTC 1 cut(s) 1359
AlwI GGATC 2 cut(s) 1011, 1364
AlwNI CAGNNNCTG 1 cut(s) 1442
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 5 cut(s) 74, 721, 876, 1463, 1466
ApoI RAATTY 3 cut(s) 1429, 1500, 1546
AsiGI ACCGGT 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 776, 1214
AsuHPI GGTGA 8 cut(s) 139, 290, 833, 1027, 1071, 1124, 1301, 1403
AvaII GGWCC 2 cut(s) 776, 1214
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
Bbv12I GWGCWC 2 cut(s) 146, 169
BbvI GCAGC 5 cut(s) 61, 733, 888, 1450, 1478
BccI CCATC 3 cut(s) 533, 643, 662
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 2 cut(s) 312, 346
BcoDI GTCTC 1 cut(s) 1359
BfaI CTAG 2 cut(s) 389, 797
BfmI CTRYAG 4 cut(s) 39, 787, 1317, 1464
BfuAI ACCTGC 2 cut(s) 403, 1345
BfuI GTATCC 1 cut(s) 602
BisI GCNGC 7 cut(s) 75, 233, 366, 722, 877, 1464, 1467
BlsI GCNGC 7 cut(s) 76, 234, 367, 723, 878, 1465, 1468
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 2 cut(s) 776, 1214
BmgT120I GGNCC 2 cut(s) 776, 1214
BmrFI CCNGG 1 cut(s) 774
BmrI ACTGGG 1 cut(s) 1411
BmsI GCATC 5 cut(s) 86, 196, 271, 420, 846
BmuI ACTGGG 1 cut(s) 1411
BplI GAGNNNNNCTC 2 cut(s) 1474, 1506
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 1272
BpuEI CTTGAG 1 cut(s) 740
BsaAI YACGTR 2 cut(s) 48, 374
BsaJI CCNNGG 3 cut(s) 363, 513, 747
BsaWI WCCGGW 1 cut(s) 710
BsaXI ACNNNNNCTCC 4 cut(s) 863, 893, 1339, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 384, 670, 895, 896
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 5 cut(s) 147, 1036, 1047, 1417, 1464
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 3 cut(s) 363, 513, 747
BseGI GGATG 2 cut(s) 1299, 1405
BseLI CCNNNNNNNGG 5 cut(s) 291, 384, 670, 895, 896
BseMII CTCAG 6 cut(s) 227, 323, 461, 533, 966, 1263
BseNI ACTGG 5 cut(s) 147, 1036, 1047, 1417, 1464
BseRI GAGGAG 1 cut(s) 1347
BseXI GCAGC 5 cut(s) 61, 733, 888, 1450, 1478
BseYI CCCAGC 2 cut(s) 383, 1107
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 146, 169
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 5 cut(s) 291, 384, 670, 895, 896
BsmAI GTCTC 1 cut(s) 1359
BsmFI GGGAC 1 cut(s) 872
BsmI GAATGC 2 cut(s) 1042, 1485
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 146, 169
Bsp143I GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 4 cut(s) 30, 233, 363, 365
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 6 cut(s) 228, 324, 462, 532, 967, 1264
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 1425
BspMAI CTGCAG 1 cut(s) 1468
BspMI ACCTGC 2 cut(s) 403, 1345
BspPI GGATC 2 cut(s) 1011, 1364
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 5 cut(s) 147, 1036, 1047, 1417, 1464
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 3 cut(s) 363, 513, 747
BssMI GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
BssT1I CCWWGG 2 cut(s) 513, 747
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 5 cut(s) 26, 247, 688, 886, 1148
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBAI YACGTR 2 cut(s) 48, 374
BstC8I GCNNGC 3 cut(s) 211, 916, 949
BstDEI CTNAG 7 cut(s) 236, 332, 470, 519, 975, 1272, 1525
BstDSI CCRYGG 2 cut(s) 363, 747
BstF5I GGATG 2 cut(s) 1299, 1405
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 6 cut(s) 315, 349, 925, 1006, 1372, 1405
BstMAI GTCTC 1 cut(s) 1359
BstMBI GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 2 cut(s) 11, 119
BstSCI CCNGG 1 cut(s) 772
BstSFI CTRYAG 4 cut(s) 39, 787, 1317, 1464
BstSNI TACGTA 1 cut(s) 48
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 5 cut(s) 61, 733, 888, 1450, 1478
BstX2I RGATCY 2 cut(s) 1003, 1369
BstXI CCANNNNNNTGG 2 cut(s) 193, 1069
BstYI RGATCY 2 cut(s) 1003, 1369
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 363, 747
BtsCI GGATG 2 cut(s) 1299, 1405
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 7 cut(s) 154, 243, 329, 581, 882, 1153, 1424
BveI ACCTGC 2 cut(s) 403, 1345
Cac8I GCNNGC 3 cut(s) 211, 916, 949
CaiI CAGNNNCTG 1 cut(s) 1442
CciI TCATGA 1 cut(s) 1425
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 776, 1214
Cfr42I CCGCGG 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 4 cut(s) 416, 623, 702, 1195
CspAI ACCGGT 1 cut(s) 710
CviAII CATG 8 cut(s) 8, 14, 116, 122, 419, 730, 748, 1426
CviQI GTAC 4 cut(s) 416, 623, 702, 1195
DdeI CTNAG 7 cut(s) 236, 332, 470, 519, 975, 1272, 1525
DpnI GATC 6 cut(s) 314, 348, 924, 1005, 1371, 1404
DpnII GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
Eco105I TACGTA 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 513, 747
Eco47I GGWCC 2 cut(s) 776, 1214
Eco57I CTGAAG 1 cut(s) 1263
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 513, 747
ErhI CCWWGG 2 cut(s) 513, 747
FaeI CATG 8 cut(s) 11, 17, 119, 125, 422, 733, 751, 1429
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 749, 781
FaqI GGGAC 1 cut(s) 872
FatI CATG 8 cut(s) 7, 13, 115, 121, 418, 729, 747, 1425
FbaI TGATCA 2 cut(s) 312, 346
Fnu4HI GCNGC 7 cut(s) 75, 233, 366, 722, 877, 1464, 1467
FokI GGATG 2 cut(s) 1286, 1392
Fsp4HI GCNGC 7 cut(s) 75, 233, 366, 722, 877, 1464, 1467
FspBI CTAG 2 cut(s) 389, 797
GluI GCNGC 7 cut(s) 75, 233, 366, 722, 877, 1464, 1467
GsaI CCCAGC 2 cut(s) 387, 1111
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 711
Hin1II CATG 8 cut(s) 11, 17, 119, 125, 422, 733, 751, 1429
HincII GTYRAC 1 cut(s) 1224
HindII GTYRAC 1 cut(s) 1224
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 6 cut(s) 743, 1076, 1208, 1247, 1306, 1348
HpaII CCGG 1 cut(s) 711
HphI GGTGA 8 cut(s) 139, 290, 833, 1027, 1071, 1124, 1301, 1403
Hpy166II GTNNAC 4 cut(s) 294, 576, 972, 1224
Hpy188I TCNGA 6 cut(s) 171, 522, 1099, 1282, 1438, 1498
Hpy188III TCNNGA 5 cut(s) 316, 779, 1303, 1426, 1506
Hpy8I GTNNAC 4 cut(s) 294, 576, 972, 1224
HpyAV CCTTC 3 cut(s) 647, 937, 1287
HpyCH4III ACNGT 5 cut(s) 26, 247, 688, 886, 1148
HpyCH4IV ACGT 2 cut(s) 47, 373
HpyCH4V TGCA 9 cut(s) 77, 209, 254, 395, 721, 918, 1042, 1466, 1556
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 7 cut(s) 236, 332, 470, 519, 975, 1272, 1525
HpySE526I ACGT 2 cut(s) 47, 373
Hsp92II CATG 8 cut(s) 11, 17, 119, 125, 422, 733, 751, 1429
Ksp22I TGATCA 2 cut(s) 312, 346
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
LmnI GCTCC 3 cut(s) 149, 884, 899
Lsp1109I GCAGC 5 cut(s) 61, 733, 888, 1450, 1478
LweI GCATC 5 cut(s) 86, 196, 271, 420, 846
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 2 cut(s) 389, 797
MaeII ACGT 2 cut(s) 47, 373
MaeIII GTNAC 4 cut(s) 682, 869, 1077, 1391
MalI GATC 6 cut(s) 314, 348, 924, 1005, 1371, 1404
MboI GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
MboII GAAGA 4 cut(s) 72, 331, 1214, 1379
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 2 cut(s) 1003, 1369
MhlI GDGCHC 2 cut(s) 146, 169
MlyI GAGTC 2 cut(s) 1085, 1342
MnlI CCTC 9 cut(s) 292, 544, 613, 994, 1092, 1333, 1368, 1382, 1500
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 5 cut(s) 68, 87, 861, 909, 1169
MslI CAYNNNNRTG 6 cut(s) 12, 120, 967, 1067, 1149, 1561
MspA1I CMGCKG 3 cut(s) 235, 365, 792
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 774
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 2 cut(s) 1042, 1485
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 747
NdeII GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
NlaIII CATG 8 cut(s) 11, 17, 119, 125, 422, 733, 751, 1429
NmeAIII GCCGAG 1 cut(s) 705
NmuCI GTSAC 4 cut(s) 682, 869, 1077, 1391
NspI RCATGY 2 cut(s) 11, 119
OliI CACNNNNGTG 2 cut(s) 967, 1067
PagI TCATGA 1 cut(s) 1425
PctI GAATGC 2 cut(s) 1042, 1485
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 4 cut(s) 743, 1208, 1247, 1306
PflFI GACNNNGTC 1 cut(s) 1351
PflMI CCANNNNNTGG 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 710
PkrI GCNGC 7 cut(s) 76, 234, 367, 723, 878, 1465, 1468
PleI GAGTC 2 cut(s) 1084, 1342
PpsI GAGTC 2 cut(s) 1084, 1342
Ppu21I YACGTR 2 cut(s) 48, 374
PsiI TTATAA 1 cut(s) 1544
Psp6I CCWGG 1 cut(s) 772
PspFI CCCAGC 2 cut(s) 383, 1107
PspGI CCWGG 1 cut(s) 772
PspPI GGNCC 2 cut(s) 776, 1214
PstI CTGCAG 1 cut(s) 1468
PstNI CAGNNNCTG 1 cut(s) 1442
PsuI RGATCY 2 cut(s) 1003, 1369
PsyI GACNNNGTC 1 cut(s) 1351
PvuII CAGCTG 1 cut(s) 792
RsaI GTAC 4 cut(s) 417, 624, 703, 1196
RsaNI GTAC 4 cut(s) 416, 623, 702, 1195
RseI CAYNNNNRTG 6 cut(s) 12, 120, 967, 1067, 1149, 1561
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 5 cut(s) 68, 87, 861, 909, 1169
SatI GCNGC 7 cut(s) 75, 233, 366, 722, 877, 1464, 1467
Sau3AI GATC 6 cut(s) 312, 346, 922, 1003, 1369, 1402
Sau96I GGNCC 2 cut(s) 776, 1214
SchI GAGTC 2 cut(s) 1085, 1342
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 2 cut(s) 146, 169
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 5 cut(s) 86, 196, 271, 420, 846
SfcI CTRYAG 4 cut(s) 39, 787, 1317, 1464
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 2 cut(s) 776, 1214
SmiMI CAYNNNNRTG 6 cut(s) 12, 120, 967, 1067, 1149, 1561
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
SnaBI TACGTA 1 cut(s) 48
SsiI CCGC 4 cut(s) 30, 233, 363, 365
SspMI CTAG 2 cut(s) 389, 797
StyD4I CCNGG 1 cut(s) 772
StyI CCWWGG 2 cut(s) 513, 747
TaaI ACNGT 5 cut(s) 26, 247, 688, 886, 1148
TaiI ACGT 2 cut(s) 50, 376
TatI WGTACW 1 cut(s) 701
TauI GCSGC 2 cut(s) 235, 368
TfiI GAWTC 4 cut(s) 743, 1208, 1247, 1306
Tru1I TTAA 5 cut(s) 68, 87, 861, 909, 1169
Tru9I TTAA 5 cut(s) 68, 87, 861, 909, 1169
TscAI CASTG 7 cut(s) 154, 250, 336, 588, 889, 1153, 1424
TseFI GTSAC 4 cut(s) 682, 869, 1077, 1391
TseI GCWGC 5 cut(s) 74, 721, 876, 1463, 1466
Tsp45I GTSAC 4 cut(s) 682, 869, 1077, 1391
TspDTI ATGAA 6 cut(s) 240, 465, 1169, 1221, 1414, 1442
TspRI CASTG 7 cut(s) 154, 250, 336, 588, 889, 1153, 1424
Tth111I GACNNNGTC 1 cut(s) 1351
Van91I CCANNNNNTGG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 776, 1214
XapI RAATTY 3 cut(s) 1429, 1500, 1546
XceI RCATGY 2 cut(s) 11, 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 1234
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 2 cut(s) 389, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.