Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g10791 |
| rosa_chinensis | RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801 |
| rosa_laevigata | RLG00000013896 RLG00000013900 |
| rosa_multiflora | Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690 |
| rosa_rugosa | Rorug06G0043200 |
| rosa_samantha | Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200 |
| rosa_wichuraiana | Rw0G004740 Rw6G014050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1544 |
| Acc36I | ACCTGC | 2 cut(s) | 403, 1345 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 291 |
| AccII | CGCG | 1 cut(s) | 365 |
| AciI | CCGC | 4 cut(s) | 30, 233, 363, 365 |
| AclWI | GGATC | 2 cut(s) | 1011, 1364 |
| AcsI | RAATTY | 3 cut(s) | 1429, 1500, 1546 |
| AcuI | CTGAAG | 1 cut(s) | 1263 |
| AfaI | GTAC | 4 cut(s) | 417, 624, 703, 1196 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 291, 384, 670, 895, 896 |
| AgeI | ACCGGT | 1 cut(s) | 710 |
| AjnI | CCWGG | 1 cut(s) | 772 |
| AleI | CACNNNNGTG | 2 cut(s) | 967, 1067 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 743, 775 |
| Alw21I | GWGCWC | 2 cut(s) | 146, 169 |
| Alw26I | GTCTC | 1 cut(s) | 1359 |
| AlwI | GGATC | 2 cut(s) | 1011, 1364 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1442 |
| AoxI | GGCC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 5 cut(s) | 74, 721, 876, 1463, 1466 |
| ApoI | RAATTY | 3 cut(s) | 1429, 1500, 1546 |
| AsiGI | ACCGGT | 1 cut(s) | 710 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 527 |
| AspS9I | GGNCC | 2 cut(s) | 776, 1214 |
| AsuHPI | GGTGA | 8 cut(s) | 139, 290, 833, 1027, 1071, 1124, 1301, 1403 |
| AvaII | GGWCC | 2 cut(s) | 776, 1214 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 335, 367 |
| Bbv12I | GWGCWC | 2 cut(s) | 146, 169 |
| BbvI | GCAGC | 5 cut(s) | 61, 733, 888, 1450, 1478 |
| BccI | CCATC | 3 cut(s) | 533, 643, 662 |
| BciT130I | CCWGG | 1 cut(s) | 774 |
| BciVI | GTATCC | 1 cut(s) | 602 |
| BclI | TGATCA | 2 cut(s) | 312, 346 |
| BcoDI | GTCTC | 1 cut(s) | 1359 |
| BfaI | CTAG | 2 cut(s) | 389, 797 |
| BfmI | CTRYAG | 4 cut(s) | 39, 787, 1317, 1464 |
| BfuAI | ACCTGC | 2 cut(s) | 403, 1345 |
| BfuI | GTATCC | 1 cut(s) | 602 |
| BisI | GCNGC | 7 cut(s) | 75, 233, 366, 722, 877, 1464, 1467 |
| BlsI | GCNGC | 7 cut(s) | 76, 234, 367, 723, 878, 1465, 1468 |
| Bme1390I | CCNGG | 1 cut(s) | 774 |
| Bme18I | GGWCC | 2 cut(s) | 776, 1214 |
| BmgT120I | GGNCC | 2 cut(s) | 776, 1214 |
| BmrFI | CCNGG | 1 cut(s) | 774 |
| BmrI | ACTGGG | 1 cut(s) | 1411 |
| BmsI | GCATC | 5 cut(s) | 86, 196, 271, 420, 846 |
| BmuI | ACTGGG | 1 cut(s) | 1411 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1474, 1506 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1272 |
| BpuEI | CTTGAG | 1 cut(s) | 740 |
| BsaAI | YACGTR | 2 cut(s) | 48, 374 |
| BsaJI | CCNNGG | 3 cut(s) | 363, 513, 747 |
| BsaWI | WCCGGW | 1 cut(s) | 710 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 863, 893, 1339, 1369 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 291, 384, 670, 895, 896 |
| Bse118I | RCCGGY | 1 cut(s) | 710 |
| Bse1I | ACTGG | 5 cut(s) | 147, 1036, 1047, 1417, 1464 |
| BseBI | CCWGG | 1 cut(s) | 774 |
| BseDI | CCNNGG | 3 cut(s) | 363, 513, 747 |
| BseGI | GGATG | 2 cut(s) | 1299, 1405 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 291, 384, 670, 895, 896 |
| BseMII | CTCAG | 6 cut(s) | 227, 323, 461, 533, 966, 1263 |
| BseNI | ACTGG | 5 cut(s) | 147, 1036, 1047, 1417, 1464 |
| BseRI | GAGGAG | 1 cut(s) | 1347 |
| BseXI | GCAGC | 5 cut(s) | 61, 733, 888, 1450, 1478 |
| BseYI | CCCAGC | 2 cut(s) | 383, 1107 |
| Bsh1236I | CGCG | 1 cut(s) | 365 |
| BshFI | GGCC | 1 cut(s) | 213 |
| BshTI | ACCGGT | 1 cut(s) | 710 |
| BsiHKAI | GWGCWC | 2 cut(s) | 146, 169 |
| BsiSI | CCGG | 1 cut(s) | 711 |
| BslFI | GGGAC | 1 cut(s) | 872 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 291, 384, 670, 895, 896 |
| BsmAI | GTCTC | 1 cut(s) | 1359 |
| BsmFI | GGGAC | 1 cut(s) | 872 |
| BsmI | GAATGC | 2 cut(s) | 1042, 1485 |
| BsnI | GGCC | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 146, 169 |
| Bsp143I | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| Bsp19I | CCATGG | 1 cut(s) | 747 |
| BspACI | CCGC | 4 cut(s) | 30, 233, 363, 365 |
| BspANI | GGCC | 1 cut(s) | 213 |
| BspCNI | CTCAG | 6 cut(s) | 228, 324, 462, 532, 967, 1264 |
| BspFNI | CGCG | 1 cut(s) | 365 |
| BspHI | TCATGA | 1 cut(s) | 1425 |
| BspMAI | CTGCAG | 1 cut(s) | 1468 |
| BspMI | ACCTGC | 2 cut(s) | 403, 1345 |
| BspPI | GGATC | 2 cut(s) | 1011, 1364 |
| BsrFI | RCCGGY | 1 cut(s) | 710 |
| BsrI | ACTGG | 5 cut(s) | 147, 1036, 1047, 1417, 1464 |
| BssAI | RCCGGY | 1 cut(s) | 710 |
| BssECI | CCNNGG | 3 cut(s) | 363, 513, 747 |
| BssMI | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| BssT1I | CCWWGG | 2 cut(s) | 513, 747 |
| Bst2UI | CCWGG | 1 cut(s) | 774 |
| Bst4CI | ACNGT | 5 cut(s) | 26, 247, 688, 886, 1148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 374 |
| BstBAI | YACGTR | 2 cut(s) | 48, 374 |
| BstC8I | GCNNGC | 3 cut(s) | 211, 916, 949 |
| BstDEI | CTNAG | 7 cut(s) | 236, 332, 470, 519, 975, 1272, 1525 |
| BstDSI | CCRYGG | 2 cut(s) | 363, 747 |
| BstF5I | GGATG | 2 cut(s) | 1299, 1405 |
| BstFNI | CGCG | 1 cut(s) | 365 |
| BstKTI | GATC | 6 cut(s) | 315, 349, 925, 1006, 1372, 1405 |
| BstMAI | GTCTC | 1 cut(s) | 1359 |
| BstMBI | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 374 |
| BstNI | CCWGG | 1 cut(s) | 774 |
| BstNSI | RCATGY | 2 cut(s) | 11, 119 |
| BstSCI | CCNGG | 1 cut(s) | 772 |
| BstSFI | CTRYAG | 4 cut(s) | 39, 787, 1317, 1464 |
| BstSNI | TACGTA | 1 cut(s) | 48 |
| BstUI | CGCG | 1 cut(s) | 365 |
| BstV1I | GCAGC | 5 cut(s) | 61, 733, 888, 1450, 1478 |
| BstX2I | RGATCY | 2 cut(s) | 1003, 1369 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 193, 1069 |
| BstYI | RGATCY | 2 cut(s) | 1003, 1369 |
| BsuI | GTATCC | 1 cut(s) | 602 |
| BsuRI | GGCC | 1 cut(s) | 213 |
| BtgI | CCRYGG | 2 cut(s) | 363, 747 |
| BtsCI | GGATG | 2 cut(s) | 1299, 1405 |
| BtsI | GCAGTG | 1 cut(s) | 581 |
| BtsIMutI | CAGTG | 7 cut(s) | 154, 243, 329, 581, 882, 1153, 1424 |
| BveI | ACCTGC | 2 cut(s) | 403, 1345 |
| Cac8I | GCNNGC | 3 cut(s) | 211, 916, 949 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1442 |
| CciI | TCATGA | 1 cut(s) | 1425 |
| Cfr10I | RCCGGY | 1 cut(s) | 710 |
| Cfr13I | GGNCC | 2 cut(s) | 776, 1214 |
| Cfr42I | CCGCGG | 1 cut(s) | 366 |
| CsiI | ACCWGGT | 1 cut(s) | 772 |
| Csp6I | GTAC | 4 cut(s) | 416, 623, 702, 1195 |
| CspAI | ACCGGT | 1 cut(s) | 710 |
| CviAII | CATG | 8 cut(s) | 8, 14, 116, 122, 419, 730, 748, 1426 |
| CviQI | GTAC | 4 cut(s) | 416, 623, 702, 1195 |
| DdeI | CTNAG | 7 cut(s) | 236, 332, 470, 519, 975, 1272, 1525 |
| DpnI | GATC | 6 cut(s) | 314, 348, 924, 1005, 1371, 1404 |
| DpnII | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| Eco105I | TACGTA | 1 cut(s) | 48 |
| Eco130I | CCWWGG | 2 cut(s) | 513, 747 |
| Eco47I | GGWCC | 2 cut(s) | 776, 1214 |
| Eco57I | CTGAAG | 1 cut(s) | 1263 |
| EcoRII | CCWGG | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 2 cut(s) | 513, 747 |
| ErhI | CCWWGG | 2 cut(s) | 513, 747 |
| FaeI | CATG | 8 cut(s) | 11, 17, 119, 125, 422, 733, 751, 1429 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 609, 641, 749, 781 |
| FaqI | GGGAC | 1 cut(s) | 872 |
| FatI | CATG | 8 cut(s) | 7, 13, 115, 121, 418, 729, 747, 1425 |
| FbaI | TGATCA | 2 cut(s) | 312, 346 |
| Fnu4HI | GCNGC | 7 cut(s) | 75, 233, 366, 722, 877, 1464, 1467 |
| FokI | GGATG | 2 cut(s) | 1286, 1392 |
| Fsp4HI | GCNGC | 7 cut(s) | 75, 233, 366, 722, 877, 1464, 1467 |
| FspBI | CTAG | 2 cut(s) | 389, 797 |
| GluI | GCNGC | 7 cut(s) | 75, 233, 366, 722, 877, 1464, 1467 |
| GsaI | CCCAGC | 2 cut(s) | 387, 1111 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeIII | GGCC | 1 cut(s) | 213 |
| HapII | CCGG | 1 cut(s) | 711 |
| Hin1II | CATG | 8 cut(s) | 11, 17, 119, 125, 422, 733, 751, 1429 |
| HincII | GTYRAC | 1 cut(s) | 1224 |
| HindII | GTYRAC | 1 cut(s) | 1224 |
| HindIII | AAGCTT | 1 cut(s) | 842 |
| HinfI | GANTC | 6 cut(s) | 743, 1076, 1208, 1247, 1306, 1348 |
| HpaII | CCGG | 1 cut(s) | 711 |
| HphI | GGTGA | 8 cut(s) | 139, 290, 833, 1027, 1071, 1124, 1301, 1403 |
| Hpy166II | GTNNAC | 4 cut(s) | 294, 576, 972, 1224 |
| Hpy188I | TCNGA | 6 cut(s) | 171, 522, 1099, 1282, 1438, 1498 |
| Hpy188III | TCNNGA | 5 cut(s) | 316, 779, 1303, 1426, 1506 |
| Hpy8I | GTNNAC | 4 cut(s) | 294, 576, 972, 1224 |
| HpyAV | CCTTC | 3 cut(s) | 647, 937, 1287 |
| HpyCH4III | ACNGT | 5 cut(s) | 26, 247, 688, 886, 1148 |
| HpyCH4IV | ACGT | 2 cut(s) | 47, 373 |
| HpyCH4V | TGCA | 9 cut(s) | 77, 209, 254, 395, 721, 918, 1042, 1466, 1556 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 374 |
| HpyF3I | CTNAG | 7 cut(s) | 236, 332, 470, 519, 975, 1272, 1525 |
| HpySE526I | ACGT | 2 cut(s) | 47, 373 |
| Hsp92II | CATG | 8 cut(s) | 11, 17, 119, 125, 422, 733, 751, 1429 |
| Ksp22I | TGATCA | 2 cut(s) | 312, 346 |
| KspI | CCGCGG | 1 cut(s) | 366 |
| Kzo9I | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| LmnI | GCTCC | 3 cut(s) | 149, 884, 899 |
| Lsp1109I | GCAGC | 5 cut(s) | 61, 733, 888, 1450, 1478 |
| LweI | GCATC | 5 cut(s) | 86, 196, 271, 420, 846 |
| MabI | ACCWGGT | 1 cut(s) | 772 |
| MaeI | CTAG | 2 cut(s) | 389, 797 |
| MaeII | ACGT | 2 cut(s) | 47, 373 |
| MaeIII | GTNAC | 4 cut(s) | 682, 869, 1077, 1391 |
| MalI | GATC | 6 cut(s) | 314, 348, 924, 1005, 1371, 1404 |
| MboI | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| MboII | GAAGA | 4 cut(s) | 72, 331, 1214, 1379 |
| MfeI | CAATTG | 1 cut(s) | 716 |
| MflI | RGATCY | 2 cut(s) | 1003, 1369 |
| MhlI | GDGCHC | 2 cut(s) | 146, 169 |
| MlyI | GAGTC | 2 cut(s) | 1085, 1342 |
| MnlI | CCTC | 9 cut(s) | 292, 544, 613, 994, 1092, 1333, 1368, 1382, 1500 |
| MroXI | GAANNNNTTC | 1 cut(s) | 527 |
| MseI | TTAA | 5 cut(s) | 68, 87, 861, 909, 1169 |
| MslI | CAYNNNNRTG | 6 cut(s) | 12, 120, 967, 1067, 1149, 1561 |
| MspA1I | CMGCKG | 3 cut(s) | 235, 365, 792 |
| MspI | CCGG | 1 cut(s) | 711 |
| MspR9I | CCNGG | 1 cut(s) | 774 |
| MunI | CAATTG | 1 cut(s) | 716 |
| Mva1269I | GAATGC | 2 cut(s) | 1042, 1485 |
| MvaI | CCWGG | 1 cut(s) | 774 |
| MvnI | CGCG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 374 |
| NcoI | CCATGG | 1 cut(s) | 747 |
| NdeII | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| NlaIII | CATG | 8 cut(s) | 11, 17, 119, 125, 422, 733, 751, 1429 |
| NmeAIII | GCCGAG | 1 cut(s) | 705 |
| NmuCI | GTSAC | 4 cut(s) | 682, 869, 1077, 1391 |
| NspI | RCATGY | 2 cut(s) | 11, 119 |
| OliI | CACNNNNGTG | 2 cut(s) | 967, 1067 |
| PagI | TCATGA | 1 cut(s) | 1425 |
| PctI | GAATGC | 2 cut(s) | 1042, 1485 |
| PdmI | GAANNNNTTC | 1 cut(s) | 527 |
| PfeI | GAWTC | 4 cut(s) | 743, 1208, 1247, 1306 |
| PflFI | GACNNNGTC | 1 cut(s) | 1351 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 291 |
| PinAI | ACCGGT | 1 cut(s) | 710 |
| PkrI | GCNGC | 7 cut(s) | 76, 234, 367, 723, 878, 1465, 1468 |
| PleI | GAGTC | 2 cut(s) | 1084, 1342 |
| PpsI | GAGTC | 2 cut(s) | 1084, 1342 |
| Ppu21I | YACGTR | 2 cut(s) | 48, 374 |
| PsiI | TTATAA | 1 cut(s) | 1544 |
| Psp6I | CCWGG | 1 cut(s) | 772 |
| PspFI | CCCAGC | 2 cut(s) | 383, 1107 |
| PspGI | CCWGG | 1 cut(s) | 772 |
| PspPI | GGNCC | 2 cut(s) | 776, 1214 |
| PstI | CTGCAG | 1 cut(s) | 1468 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1442 |
| PsuI | RGATCY | 2 cut(s) | 1003, 1369 |
| PsyI | GACNNNGTC | 1 cut(s) | 1351 |
| PvuII | CAGCTG | 1 cut(s) | 792 |
| RsaI | GTAC | 4 cut(s) | 417, 624, 703, 1196 |
| RsaNI | GTAC | 4 cut(s) | 416, 623, 702, 1195 |
| RseI | CAYNNNNRTG | 6 cut(s) | 12, 120, 967, 1067, 1149, 1561 |
| SacII | CCGCGG | 1 cut(s) | 366 |
| SaqAI | TTAA | 5 cut(s) | 68, 87, 861, 909, 1169 |
| SatI | GCNGC | 7 cut(s) | 75, 233, 366, 722, 877, 1464, 1467 |
| Sau3AI | GATC | 6 cut(s) | 312, 346, 922, 1003, 1369, 1402 |
| Sau96I | GGNCC | 2 cut(s) | 776, 1214 |
| SchI | GAGTC | 2 cut(s) | 1085, 1342 |
| ScrFI | CCNGG | 1 cut(s) | 774 |
| SduI | GDGCHC | 2 cut(s) | 146, 169 |
| SexAI | ACCWGGT | 1 cut(s) | 772 |
| SfaNI | GCATC | 5 cut(s) | 86, 196, 271, 420, 846 |
| SfcI | CTRYAG | 4 cut(s) | 39, 787, 1317, 1464 |
| Sfr303I | CCGCGG | 1 cut(s) | 366 |
| SgrBI | CCGCGG | 1 cut(s) | 366 |
| SinI | GGWCC | 2 cut(s) | 776, 1214 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 12, 120, 967, 1067, 1149, 1561 |
| SmlI | CTYRAG | 1 cut(s) | 755 |
| SmoI | CTYRAG | 1 cut(s) | 755 |
| SnaBI | TACGTA | 1 cut(s) | 48 |
| SsiI | CCGC | 4 cut(s) | 30, 233, 363, 365 |
| SspMI | CTAG | 2 cut(s) | 389, 797 |
| StyD4I | CCNGG | 1 cut(s) | 772 |
| StyI | CCWWGG | 2 cut(s) | 513, 747 |
| TaaI | ACNGT | 5 cut(s) | 26, 247, 688, 886, 1148 |
| TaiI | ACGT | 2 cut(s) | 50, 376 |
| TatI | WGTACW | 1 cut(s) | 701 |
| TauI | GCSGC | 2 cut(s) | 235, 368 |
| TfiI | GAWTC | 4 cut(s) | 743, 1208, 1247, 1306 |
| Tru1I | TTAA | 5 cut(s) | 68, 87, 861, 909, 1169 |
| Tru9I | TTAA | 5 cut(s) | 68, 87, 861, 909, 1169 |
| TscAI | CASTG | 7 cut(s) | 154, 250, 336, 588, 889, 1153, 1424 |
| TseFI | GTSAC | 4 cut(s) | 682, 869, 1077, 1391 |
| TseI | GCWGC | 5 cut(s) | 74, 721, 876, 1463, 1466 |
| Tsp45I | GTSAC | 4 cut(s) | 682, 869, 1077, 1391 |
| TspDTI | ATGAA | 6 cut(s) | 240, 465, 1169, 1221, 1414, 1442 |
| TspRI | CASTG | 7 cut(s) | 154, 250, 336, 588, 889, 1153, 1424 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1351 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 291 |
| VpaK11BI | GGWCC | 2 cut(s) | 776, 1214 |
| XapI | RAATTY | 3 cut(s) | 1429, 1500, 1546 |
| XceI | RCATGY | 2 cut(s) | 11, 119 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1234 |
| XmnI | GAANNNNTTC | 1 cut(s) | 527 |
| XspI | CTAG | 2 cut(s) | 389, 797 |