Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000869.1

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Reverse (-)

80191 .. 81087

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000869.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgccgctgagaaacactgtttgtgcaaacgcacttttatcaggttatggtgatgccaagttgtggacagaggcagtagaattgatcaggaagatgccagcactgagtttggagtatgatcacttcacattgtccgcggcattacgtgcctgtgctgggctagttgcagttgaattgggtaggcaggtacatggttatttgatgcgttcggtttatgatgtgggaagtgatatgtttctgctgagttcattgattgaaatgtatggtaaatgtgggctggtagccaaggctcagaaagttttaaattttgatggaaaaggagaggggaaaagagatgtggttatgtggacttcactgcttggtttgtgtggtagaattggatactataaagaggtacttgaactattcaaagatatgttgatggaaggaattagcccagatggggtggcatttgtgacagtcatctctgcttgtactcacaccggtcaattgcagctcggcatggagtattttgaatccatggaactcaagttctacttgaaaccaggtccagaacactacagctgtctagttgatttgttgtgtagagctggtgaattgggcaaggagtggaagcttgttgatgagatgcttaataaaggtcacagcagctccactgtccctatgtggggagctttgcttaatgcttgcaaagatcaaggtgatcttgaattgggtaaactggctgctcaaagggcacttgagttgaatcctcataatgatggtatttatgttttgctatcaaatttatatgctaggttcggtatgtggcacgagattaatcatttgagggagttaatgaaagaaaaggggtcaaggaaagatgtcggatatagccggattgcattcacaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

298

Amino Acids

33.21

Weight (kDa)

6.26

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccII	CGCG	1 cut(s)	137
AciI	CCGC	3 cut(s)	5, 135, 137
AcsI	RAATTY	2 cut(s)	304, 784
AfaI	GTAC	3 cut(s)	189, 396, 475
AfiI	CCNNNNNNNGG	5 cut(s)	63, 156, 442, 667, 668
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	8 cut(s)	173, 257, 401, 409, 515, 541, 710, 748
AjnI	CCWGG	1 cut(s)	544
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	6 cut(s)	496, 564, 590, 616, 651, 674
AluI	AGCT	6 cut(s)	496, 564, 590, 616, 651, 674
ApeKI	GCWGC	3 cut(s)	493, 648, 725
ApoI	RAATTY	2 cut(s)	304, 784
AseI	ATTAAT	1 cut(s)	819
AsiGI	ACCGGT	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	62, 605, 713
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	739
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BauI	CACGAG	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	505, 660, 712
BccI	CCATC	4 cut(s)	305, 415, 434, 755
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	2 cut(s)	84, 118
BfaI	CTAG	3 cut(s)	161, 569, 795
BfmI	CTRYAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	5 cut(s)	5, 138, 494, 649, 726
BlsI	GCNGC	5 cut(s)	6, 139, 495, 650, 727
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	4 cut(s)	43, 84, 192, 618
BpuEI	CTTGAG	2 cut(s)	512, 761
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	135, 285, 519
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 156, 442, 667, 668
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	135, 285, 519
BseLI	CCNNNNNNNGG	5 cut(s)	63, 156, 442, 667, 668
BseMII	CTCAG	3 cut(s)	95, 233, 305
BseNI	ACTGG	1 cut(s)	726
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	505, 660, 712
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	483, 877
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	5 cut(s)	63, 156, 442, 667, 668
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	4 cut(s)	84, 118, 694, 703
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	3 cut(s)	5, 135, 137
BspCNI	CTCAG	3 cut(s)	96, 234, 304
BspFNI	CGCG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	726
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	135, 285, 519
BssMI	GATC	4 cut(s)	84, 118, 694, 703
BssSI	CACGAG	1 cut(s)	812
BssT1I	CCWWGG	2 cut(s)	285, 519
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	19, 460, 658
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	99, 688
BstDEI	CTNAG	4 cut(s)	8, 104, 242, 291
BstDSI	CCRYGG	2 cut(s)	135, 519
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	87, 121, 697, 706
BstMBI	GATC	4 cut(s)	84, 118, 694, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 734
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	559
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	505, 660, 712
BsuI	GTATCC	1 cut(s)	374
BtgI	CCRYGG	2 cut(s)	135, 519
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	4 cut(s)	15, 101, 353, 654
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	99, 688
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	548
Cfr42I	CCGCGG	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	188, 395, 474
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	3 cut(s)	191, 502, 520
CviQI	GTAC	3 cut(s)	188, 395, 474
DdeI	CTNAG	4 cut(s)	8, 104, 242, 291
DpnI	GATC	4 cut(s)	86, 120, 696, 705
DpnII	GATC	4 cut(s)	84, 118, 694, 703
DraI	TTTAAA	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	285, 519
Eco47I	GGWCC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	285, 519
ErhI	CCWWGG	2 cut(s)	285, 519
FaeI	CATG	3 cut(s)	194, 505, 523
FalI	AAGNNNNNCTT	6 cut(s)	381, 413, 521, 553, 690, 722
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	190, 501, 519
FbaI	TGATCA	2 cut(s)	84, 118
Fnu4HI	GCNGC	5 cut(s)	5, 138, 494, 649, 726
Fsp4HI	GCNGC	5 cut(s)	5, 138, 494, 649, 726
FspBI	CTAG	3 cut(s)	161, 569, 795
GluI	GCNGC	5 cut(s)	5, 138, 494, 649, 726
GsaI	CCCAGC	1 cut(s)	159
HapII	CCGG	2 cut(s)	483, 877
Hin1II	CATG	3 cut(s)	194, 505, 523
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	515, 748
HpaII	CCGG	2 cut(s)	483, 877
HphI	GGTGA	3 cut(s)	62, 605, 713
Hpy166II	GTNNAC	3 cut(s)	66, 348, 719
Hpy188I	TCNGA	2 cut(s)	294, 869
Hpy188III	TCNNGA	3 cut(s)	88, 551, 707
Hpy8I	GTNNAC	3 cut(s)	66, 348, 719
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	3 cut(s)	19, 460, 658
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	26, 167, 493, 690, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 734
HpyF3I	CTNAG	4 cut(s)	8, 104, 242, 291
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	194, 505, 523
Ksp22I	TGATCA	2 cut(s)	84, 118
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	84, 118, 694, 703
LmnI	GCTCC	2 cut(s)	656, 671
Lsp1109I	GCAGC	3 cut(s)	505, 660, 712
LweI	GCATC	4 cut(s)	43, 84, 192, 618
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	3 cut(s)	161, 569, 795
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	454, 641
MalI	GATC	4 cut(s)	86, 120, 696, 705
MboI	GATC	4 cut(s)	84, 118, 694, 703
MboII	GAAGA	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	847
MnlI	CCTC	5 cut(s)	64, 316, 385, 762, 822
MseI	TTAA	5 cut(s)	302, 633, 681, 819, 836
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	3 cut(s)	7, 137, 564
MspI	CCGG	2 cut(s)	483, 877
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	146, 734
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	84, 118, 694, 703
NlaIII	CATG	3 cut(s)	194, 505, 523
NmeAIII	GCCGAG	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	454, 641
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	515, 748
PflMI	CCANNNNNTGG	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	6, 139, 495, 650, 727
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	564
RsaI	GTAC	3 cut(s)	189, 396, 475
RsaNI	GTAC	3 cut(s)	188, 395, 474
RseI	CAYNNNNRTG	1 cut(s)	759
SacII	CCGCGG	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	302, 633, 681, 819, 836
SatI	GCNGC	5 cut(s)	5, 138, 494, 649, 726
Sau3AI	GATC	4 cut(s)	84, 118, 694, 703
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	739
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	4 cut(s)	43, 84, 192, 618
SfcI	CTRYAG	1 cut(s)	559
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	527, 740
SmoI	CTYRAG	2 cut(s)	527, 740
SsiI	CCGC	3 cut(s)	5, 135, 137
SspMI	CTAG	3 cut(s)	161, 569, 795
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	2 cut(s)	285, 519
TaaI	ACNGT	3 cut(s)	19, 460, 658
TaiI	ACGT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	2 cut(s)	7, 140
TfiI	GAWTC	2 cut(s)	515, 748
Tru1I	TTAA	5 cut(s)	302, 633, 681, 819, 836
Tru9I	TTAA	5 cut(s)	302, 633, 681, 819, 836
TscAI	CASTG	4 cut(s)	22, 108, 360, 661
TseFI	GTSAC	2 cut(s)	454, 641
TseI	GCWGC	3 cut(s)	493, 648, 725
Tsp45I	GTSAC	2 cut(s)	454, 641
TspDTI	ATGAA	2 cut(s)	237, 854
TspRI	CASTG	4 cut(s)	22, 108, 360, 661
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	2 cut(s)	304, 784
XspI	CTAG	3 cut(s)	161, 569, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.