Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017058

Physical Location & Seq

Genomic Coordinates Forward (+)

5185720 .. 5189515

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04440.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAACAATGGTTCCTCTTCCAAAATGCACGGTCCTGATCAACCTGAAATAAGTGGGTCCTCCCCCAAATCCCTGCGCACCAAAATGGGCCAACCGGAAGACAGTGAAAAGAAGATTTTTCATAAGAAACTCAAAGATGTTGAGATTAGTGTTCCGATAGTGTATGGCAATATTGCATTCTGGCTCGGTAAGAAGGCGAACGAGTACCAATCACACAAGTGGACTGTGTACGTTCGTGGGGCAACCAATGAGGATCTTGGAGTGGTGATAAAACGTGCTGTTTTTCAGCTGCATTCCAGTTTCAGTAATCCCACAAGGGTGGTTGAGTCACCACCATTTGAATTGTCAGAATGTGGCTGGGGTGAATTTGAAATCGCCATTACGCTTTTCTTCCACAGTGATGTTTGTGATAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCCAGAGGATGAGTCTGGTCCTATGTCCACTAAAAAGCCTGTTGTTGTGGAATCATATGATGAGATTGTGTTCCCTGAGCCTTCAGAGGCTTTATTGGCTCGTATGCAGAATGAGCCAGCTGTAGTCGTTCCCAGACTACCTGCTGGCGTTGCTTTGCCTGCACCTGTGCCAGTTGAGGATCCAAGTAAGAGAAAGAGAGGGGACACTAAAGATCATCTCCTATGCCAGTGGTTCACAAACTTTTCAGAAGCAGATGAGCTGCTACAACTTGCAGCAGCTCGTCAGCAGGTTCAAGCTCATATTGCTAAATTCCGAAGAGAGATGACTCTTCTAGAGGGTAAGAATAAACAAGTGAATTCTGTCTCCGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

274

Amino Acids

30.67

Weight (kDa)

6.32

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45600 AT5G45600
fragaria_vesca	FvH4_2g10790
malus_domestica	MD10G1061200.v1.1
prunus_persica	Prupe.8G082000_v2.0.a1
pyrus_communis	pycom05g04440 pycom10g04710
rosa_chinensis	RchiOBHm_Chr6g0268561
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162700 Rh6BG166800 Rh6CG160500
rosa_wichuraiana	Rw0G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
Acc36I	ACCTGC	2 cut(s)	595, 724
AclWI	GGATC	3 cut(s)	261, 620, 633
AcsI	RAATTY	3 cut(s)	365, 755, 802
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	3 cut(s)	206, 230, 446
AgsI	TTSAA	4 cut(s)	341, 371, 439, 740
AleI	CACNNNNGTG	2 cut(s)	217, 317
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	289, 566, 706, 725, 743
AluI	AGCT	5 cut(s)	289, 566, 706, 725, 743
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	3 cut(s)	261, 620, 633
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	4 cut(s)	289, 706, 719, 722
ApoI	RAATTY	3 cut(s)	365, 755, 802
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	4 cut(s)	32, 57, 88, 464
AsuHPI	GGTGA	3 cut(s)	277, 321, 374
AvaII	GGWCC	3 cut(s)	32, 57, 464
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	276, 693, 731, 734
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	2 cut(s)	595, 724
BisI	GCNGC	4 cut(s)	290, 707, 720, 723
BlsI	GCNGC	4 cut(s)	291, 708, 721, 724
Bme18I	GGWCC	3 cut(s)	32, 57, 464
BmgT120I	GGNCC	4 cut(s)	32, 57, 88, 464
BmiI	GGNNCC	3 cut(s)	13, 58, 627
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	94
Bse1I	ACTGG	4 cut(s)	297, 617, 673, 817
BseGI	GGATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	4 cut(s)	297, 617, 673, 817
BseXI	GCAGC	4 cut(s)	276, 693, 731, 734
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	662
BsmAI	GTCTC	1 cut(s)	814
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	2 cut(s)	176, 292
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	37, 253, 625, 658
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	3 cut(s)	13, 58, 627
BspMI	ACCTGC	2 cut(s)	595, 724
BspPI	GGATC	3 cut(s)	261, 620, 633
BsrI	ACTGG	4 cut(s)	297, 617, 673, 817
BssMI	GATC	4 cut(s)	37, 253, 625, 658
Bst4CI	ACNGT	4 cut(s)	32, 104, 226, 398
Bst6I	CTCTTC	3 cut(s)	22, 757, 780
BstC8I	GCNNGC	3 cut(s)	564, 592, 606
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	40, 256, 628, 661
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	4 cut(s)	37, 253, 625, 658
BstMWI	GCNNNNNNNGC	5 cut(s)	542, 559, 596, 605, 749
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	4 cut(s)	276, 693, 731, 734
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	253, 625
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	253, 625
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	109, 403, 680
BveI	ACCTGC	2 cut(s)	595, 724
Cac8I	GCNNGC	3 cut(s)	564, 592, 606
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	32, 57, 88, 464
Csp6I	GTAC	3 cut(s)	205, 229, 445
CviQI	GTAC	3 cut(s)	205, 229, 445
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	4 cut(s)	39, 255, 627, 660
DpnII	GATC	4 cut(s)	37, 253, 625, 658
Eam1104I	CTCTTC	3 cut(s)	22, 757, 780
EarI	CTCTTC	3 cut(s)	22, 757, 780
Eco47I	GGWCC	3 cut(s)	32, 57, 464
Eco57I	CTGAAG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	802
FaiI	YATR	8 cut(s)	123, 165, 470, 502, 504, 551, 670, 747
FaqI	GGGAC	1 cut(s)	662
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	290, 707, 720, 723
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	290, 707, 720, 723
FspBI	CTAG	1 cut(s)	779
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	4 cut(s)	290, 707, 720, 723
GsaI	CCCAGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	326, 458, 497, 772
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	277, 321, 374
Hpy166II	GTNNAC	4 cut(s)	222, 229, 474, 681
Hpy188I	TCNGA	6 cut(s)	156, 349, 532, 694, 761, 814
Hpy188III	TCNNGA	2 cut(s)	35, 779
Hpy8I	GTNNAC	4 cut(s)	222, 229, 474, 681
HpyAV	CCTTC	2 cut(s)	187, 537
HpyCH4III	ACNGT	4 cut(s)	32, 104, 226, 398
HpyCH4IV	ACGT	2 cut(s)	231, 274
HpyCH4V	TGCA	6 cut(s)	28, 176, 292, 553, 608, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	542, 559, 596, 605, 749
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	2 cut(s)	231, 274
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	37, 253, 625, 658
Lsp1109I	GCAGC	4 cut(s)	276, 693, 731, 734
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	2 cut(s)	231, 274
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	4 cut(s)	39, 255, 627, 660
MboI	GATC	4 cut(s)	37, 253, 625, 658
MboII	GAAGA	6 cut(s)	9, 110, 124, 382, 767, 774
MflI	RGATCY	2 cut(s)	253, 625
MluCI	AATT	4 cut(s)	341, 365, 755, 802
MlyI	GAGTC	3 cut(s)	335, 467, 766
MnlI	CCTC	8 cut(s)	25, 70, 244, 445, 526, 616, 638, 775
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	4 cut(s)	83, 217, 317, 399
MspA1I	CMGCKG	2 cut(s)	289, 566
MspI	CCGG	1 cut(s)	95
Mva1269I	GAATGC	2 cut(s)	176, 292
MwoI	GCNNNNNNNGC	5 cut(s)	542, 559, 596, 605, 749
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	4 cut(s)	37, 253, 625, 658
NlaIV	GGNNCC	3 cut(s)	13, 58, 627
NmuCI	GTSAC	1 cut(s)	327
NsbI	TGCGCA	1 cut(s)	77
OliI	CACNNNNGTG	2 cut(s)	217, 317
PctI	GAATGC	2 cut(s)	176, 292
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	4 cut(s)	291, 708, 721, 724
PleI	GAGTC	3 cut(s)	334, 466, 766
PpsI	GAGTC	3 cut(s)	334, 466, 766
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	13, 58, 627
PspPI	GGNCC	4 cut(s)	32, 57, 88, 464
PspPPI	RGGWCCY	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	253, 625
PvuII	CAGCTG	2 cut(s)	289, 566
RsaI	GTAC	3 cut(s)	206, 230, 446
RsaNI	GTAC	3 cut(s)	205, 229, 445
RseI	CAYNNNNRTG	4 cut(s)	83, 217, 317, 399
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	4 cut(s)	290, 707, 720, 723
Sau3AI	GATC	4 cut(s)	37, 253, 625, 658
Sau96I	GGNCC	4 cut(s)	32, 57, 88, 464
SchI	GAGTC	3 cut(s)	335, 467, 766
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	3 cut(s)	32, 57, 464
SmiMI	CAYNNNNRTG	4 cut(s)	83, 217, 317, 399
Sse9I	AATT	4 cut(s)	341, 365, 755, 802
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	779
TaaI	ACNGT	4 cut(s)	32, 104, 226, 398
TaiI	ACGT	2 cut(s)	234, 277
TasI	AATT	4 cut(s)	341, 365, 755, 802
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	3 cut(s)	109, 403, 680
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	4 cut(s)	289, 706, 719, 722
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	17, 110, 419
TspRI	CASTG	3 cut(s)	109, 403, 680
VpaK11BI	GGWCC	3 cut(s)	32, 57, 464
XapI	RAATTY	3 cut(s)	365, 755, 802
XbaI	TCTAGA	1 cut(s)	778
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.