Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013156

Physical Location & Seq

Genomic Coordinates Forward (+)

9605494 .. 9607971

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTTCCTCATCTCAATCTTCCCAAACGCTTCAGTTTTACAGCTTCAATAGACTGGTTTTGCCGCCATTTTTTTGGCAATGCAGGTCTTCGATCTGTTATAACTGATATAGGTGATGGTGATGCTACCAACATGCATTGTTGGGTACCTAAGATTCACAAAGCATTCAAACCCAACCTCATTTTGATTCATGGGTTTGGAGCCAATGCAATGTGGCAGTACGGTGAGCATATTCGCCATTTCACCGCTCGTTTTAATGTCTACGTGCCCGATCTTGTTTTCTTTGGTGACTCTTACACATGCAGCCAAGAACGAAATGAGTCGTTCCAGGCTGCTTGTGTAGTTAAGTTGATGCACGCCCATAGAGTTGGAAAGGCAAGCATTGTTGGGATTAGCTATGGCGGGTTTGTAGGGTATAACATGGCAGTGCAATGTCCGCAGATGGTAGAAAAATTGGTGTTATGTTGTACTGGAATTTGCTTAGAGGAGAAAGATTTGGATAATGGATTATTTAATGTTTCCACTGTAGAGGAAGCTTCAAGCATTTTGCTACCGCAAACACCTCAAAAACTTAAGGAACTAATGCGATATTCATTCGTCAAGCCAGCTACGGCAATCCCCTCCTTTTTCCTCACTGATTTCATTAATATAATGTGTACGAACTATGTAGAAGAAAAGAGAGAGATGATCGAGGCAATATTGATGAACCGAAAGCTATCCAATCTCCCCAAGATCACACATCCCACATTAATAATATGGGGAGAGCAAGATCAAATCTTTCCTTTGGAACTAGGGTACAGACTAAAAAGACATATAGGGAAACACGGTCAACTAGTGATTATTAAGAAGGCTGGACATGCTGTCAACCTGGAACAACCCAAGGAGTTTATAAAGCATTTAAAATCGTTTCTTTATGAATTTTGGTCTTCTCCGCCGTCGCCAACATGGAAGGATCACTTTCACTTTCATATTGATAGAGTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

329

Amino Acids

37.73

Weight (kDa)

8.64

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	58 - 292	8e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	60 - 297	1.6e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09430
fragaria_vesca	FvH4_2g10970
malus_domestica	MD05G1044200.v1.1
prunus_persica	Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0269171
rosa_laevigata	RLG00000013875
rosa_multiflora	Rmu_ssc0000381.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198990
rosa_rugosa	Rorug06G0045200 Rorug06G0045200
rosa_samantha	Rh6AG166000 Rh6BG171400 Rh6CG165100 Rh6DG156700
rosa_wichuraiana	Rw6G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	101, 890
Acc36I	ACCTGC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	261, 981
AciI	CCGC	6 cut(s)	64, 246, 402, 437, 554, 932
AclWI	GGATC	1 cut(s)	960
AcsI	RAATTY	2 cut(s)	474, 917
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	5 cut(s)	147, 221, 469, 658, 797
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	48, 169, 540
AhdI	GACNNNNNGTC	1 cut(s)	860
AhlI	ACTAGT	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	327, 867
AluBI	AGCT	5 cut(s)	44, 396, 536, 608, 715
AluI	AGCT	5 cut(s)	44, 396, 536, 608, 715
AlwI	GGATC	1 cut(s)	960
ApeKI	GCWGC	2 cut(s)	303, 332
ApoI	RAATTY	2 cut(s)	474, 917
AseI	ATTAAT	2 cut(s)	645, 749
Asp718I	GGTACC	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	125, 131, 235, 236, 299
BaeGI	GKGCMC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	80, 918
BbvI	GCAGC	2 cut(s)	315, 319
BccI	CCATC	2 cut(s)	110, 436
BceAI	ACGGC	2 cut(s)	627, 919
BciT130I	CCWGG	2 cut(s)	329, 869
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	2 cut(s)	791, 833
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	3 cut(s)	64, 304, 333
BlsI	GCNGC	3 cut(s)	65, 305, 334
Bme1390I	CCNGG	2 cut(s)	329, 869
BmeRI	GACNNNNNGTC	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	147, 202
BmrFI	CCNGG	2 cut(s)	329, 869
BmsI	GCATC	2 cut(s)	112, 342
BpiI	GAAGAC	2 cut(s)	80, 918
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	879
Bse1I	ACTGG	2 cut(s)	59, 475
Bse3DI	GCAATG	3 cut(s)	85, 216, 437
BseBI	CCWGG	2 cut(s)	329, 869
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	1 cut(s)	739
BseMI	GCAATG	3 cut(s)	85, 216, 437
BseNI	ACTGG	2 cut(s)	59, 475
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	315, 319
BshNI	GGYRCC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
BspACI	CCGC	6 cut(s)	64, 246, 402, 437, 554, 932
BspLI	GGNNCC	2 cut(s)	147, 202
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	960
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	85, 216, 437
BsrI	ACTGG	2 cut(s)	59, 475
BssECI	CCNNGG	1 cut(s)	879
BssMI	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
BssNAI	GTATAC	1 cut(s)	982
BssT1I	CCWWGG	1 cut(s)	879
Bst1107I	GTATAC	1 cut(s)	982
Bst2UI	CCWGG	2 cut(s)	329, 869
Bst4CI	ACNGT	3 cut(s)	224, 526, 827
BstAFI	CTTAAG	1 cut(s)	572
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	357, 379, 606
BstDEI	CTNAG	2 cut(s)	150, 481
BstF5I	GGATG	1 cut(s)	739
BstKTI	GATC	6 cut(s)	95, 274, 690, 735, 772, 955
BstMBI	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 857
BstNI	CCWGG	2 cut(s)	329, 869
BstNSI	RCATGY	3 cut(s)	136, 303, 860
BstSCI	CCNGG	2 cut(s)	327, 867
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	315, 319
BstV2I	GAAGAC	2 cut(s)	80, 918
BstXI	CCANNNNNNTGG	2 cut(s)	74, 368
BstZ17I	GTATAC	1 cut(s)	982
BtsCI	GGATG	1 cut(s)	739
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	432, 522, 633
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	357, 379, 606
Csp6I	GTAC	5 cut(s)	146, 220, 468, 657, 796
CviAII	CATG	6 cut(s)	133, 191, 300, 421, 857, 945
CviQI	GTAC	5 cut(s)	146, 220, 468, 657, 796
DdeI	CTNAG	2 cut(s)	150, 481
DpnI	GATC	6 cut(s)	94, 273, 689, 734, 771, 954
DpnII	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
DraI	TTTAAA	1 cut(s)	900
DriI	GACNNNNNGTC	1 cut(s)	860
Eam1105I	GACNNNNNGTC	1 cut(s)	860
EciI	GGCGGA	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	879
Eco57I	CTGAAG	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	327, 867
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	6 cut(s)	136, 194, 303, 424, 860, 948
FalI	AAGNNNNNCTT	2 cut(s)	941, 973
FatI	CATG	6 cut(s)	132, 190, 299, 420, 856, 944
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	2 cut(s)	261, 981
Fnu4HI	GCNGC	3 cut(s)	64, 304, 333
FokI	GGATG	1 cut(s)	726
Fsp4HI	GCNGC	3 cut(s)	64, 304, 333
FspBI	CTAG	2 cut(s)	791, 833
GluI	GCNGC	3 cut(s)	64, 304, 333
Hin1II	CATG	6 cut(s)	136, 194, 303, 424, 860, 948
HincII	GTYRAC	2 cut(s)	830, 865
HindII	GTYRAC	2 cut(s)	830, 865
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	4 cut(s)	154, 187, 290, 320
HphI	GGTGA	5 cut(s)	125, 131, 235, 236, 299
Hpy166II	GTNNAC	5 cut(s)	262, 657, 830, 865, 982
Hpy8I	GTNNAC	5 cut(s)	262, 657, 830, 865, 982
Hpy99I	CGWCG	1 cut(s)	940
HpyAV	CCTTC	2 cut(s)	841, 943
HpyCH4III	ACNGT	3 cut(s)	224, 526, 827
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	83, 136, 209, 303, 355, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 857
HpyF3I	CTNAG	2 cut(s)	150, 481
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	136, 194, 303, 424, 860, 948
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	9 cut(s)	40, 69, 314, 341, 456, 618, 837, 854, 881
Lsp1109I	GCAGC	2 cut(s)	315, 319
LweI	GCATC	2 cut(s)	112, 342
MaeI	CTAG	2 cut(s)	791, 833
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	6 cut(s)	94, 273, 689, 734, 771, 954
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
MboII	GAAGA	4 cut(s)	11, 80, 683, 918
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	3 cut(s)	452, 474, 917
MlyI	GAGTC	2 cut(s)	284, 329
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	18, 188, 478, 523, 573, 631, 641, 685
Mph1103I	ATGCAT	1 cut(s)	138
MseI	TTAA	8 cut(s)	255, 345, 513, 573, 645, 749, 843, 899
MslI	CAYNNNNRTG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	329, 869
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	2 cut(s)	329, 869
MwoI	GCNNNNNNNGC	2 cut(s)	436, 857
NdeII	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
NlaIII	CATG	6 cut(s)	136, 194, 303, 424, 860, 948
NlaIV	GGNNCC	2 cut(s)	147, 202
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	3 cut(s)	136, 303, 860
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	154, 187
PkrI	GCNGC	3 cut(s)	65, 305, 334
PleI	GAGTC	2 cut(s)	284, 328
PpsI	GAGTC	2 cut(s)	284, 328
Ppu21I	YACGTR	1 cut(s)	265
PshBI	ATTAAT	2 cut(s)	645, 749
PsiI	TTATAA	2 cut(s)	101, 890
Psp6I	CCWGG	2 cut(s)	327, 867
PspGI	CCWGG	2 cut(s)	327, 867
PspN4I	GGNNCC	2 cut(s)	147, 202
RsaI	GTAC	5 cut(s)	147, 221, 469, 658, 797
RsaNI	GTAC	5 cut(s)	146, 220, 468, 657, 796
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	8 cut(s)	255, 345, 513, 573, 645, 749, 843, 899
SatI	GCNGC	3 cut(s)	64, 304, 333
Sau3AI	GATC	6 cut(s)	92, 271, 687, 732, 769, 952
SchI	GAGTC	2 cut(s)	284, 329
ScrFI	CCNGG	2 cut(s)	329, 869
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	112, 342
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	832
Sse9I	AATT	3 cut(s)	452, 474, 917
SsiI	CCGC	6 cut(s)	64, 246, 402, 437, 554, 932
SspI	AATATT	1 cut(s)	699
SspMI	CTAG	2 cut(s)	791, 833
StyD4I	CCNGG	2 cut(s)	327, 867
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	3 cut(s)	224, 526, 827
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	91, 690
TasI	AATT	3 cut(s)	452, 474, 917
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	154, 187
Tru1I	TTAA	8 cut(s)	255, 345, 513, 573, 645, 749, 843, 899
Tru9I	TTAA	8 cut(s)	255, 345, 513, 573, 645, 749, 843, 899
TscAI	CASTG	3 cut(s)	432, 529, 640
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	303, 332
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	6 cut(s)	179, 582, 631, 719, 930, 956
TspRI	CASTG	3 cut(s)	432, 529, 640
Vha464I	CTTAAG	1 cut(s)	572
VspI	ATTAAT	2 cut(s)	645, 749
XapI	RAATTY	2 cut(s)	474, 917
XceI	RCATGY	3 cut(s)	136, 303, 860
XmiI	GTMKAC	2 cut(s)	261, 981
XspI	CTAG	2 cut(s)	791, 833
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.