Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013156

Physical Location & Seq

Genomic Coordinates Reverse (-)

5943253 .. 5946428

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0045200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGTTTCCCTACACAAACCTCACGCTTTCTCTCTCTTTATCCTCTCCCTCGCCCTCTCCGCCTTCTCTCCCTTCGACAACTACGCCTTCGACTGCGGCTTCACCTTCGACGATGGCTGCCGCTTCATTCCGGACTTGTCCATTTTATCTCGCTCAATTTCACTCCGAAACCAAAGCCCCAATCCCAATCCCCCCCAAATTTACCAAACCGCTAGGGTTTTCCCGCGGCCATCCTAGTATGAGTTCCAAATCTGCGAGCCGGGGACCCACATGGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGGTATCACTTGGATTGCTTCAGAAGGACTCAAGTACAGAGTCTTTGAGACATCACTGGCTAACCTTCAGGGAGATGAGGAGCATGCTTACAGCAAAATGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

145

Amino Acids

15.91

Weight (kDa)

9.86

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09430
fragaria_vesca	FvH4_2g10970
malus_domestica	MD05G1044200.v1.1
prunus_persica	Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0269171
rosa_laevigata	RLG00000013875
rosa_multiflora	Rmu_ssc0000381.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198990
rosa_rugosa	Rorug06G0045200 Rorug06G0045200
rosa_samantha	Rh6AG166000 Rh6BG171400 Rh6CG165100 Rh6DG156700
rosa_wichuraiana	Rw6G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	6 cut(s)	62, 98, 123, 212, 226, 228
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	335, 382
AfaI	GTAC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	109, 240
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	215, 237, 299
BisI	GCNGC	4 cut(s)	99, 120, 123, 229
BlsI	GCNGC	4 cut(s)	100, 121, 124, 230
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	267, 268, 321
BmrFI	CCNGG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	226, 262
BsaWI	WCCGGW	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	226, 262
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	133, 262
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	132
BspACI	CCGC	6 cut(s)	62, 98, 123, 212, 226, 228
BspANI	GGCC	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	267, 268, 321
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	226, 262
BstC8I	GCNNGC	2 cut(s)	259, 416
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	259, 416
Cfr13I	GGNCC	1 cut(s)	266
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	2 cut(s)	273, 415
CviJI	RGCY	6 cut(s)	101, 119, 179, 231, 261, 391
CviKI_1	RGCY	6 cut(s)	101, 119, 179, 231, 261, 391
CviQI	GTAC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	335, 382
EcoO109I	RGGNCCY	1 cut(s)	266
FaeI	CATG	2 cut(s)	276, 418
FaiI	YATR	6 cut(s)	242, 274, 294, 305, 332, 416
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	272, 414
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	4 cut(s)	99, 120, 123, 229
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	99, 120, 123, 229
FspBI	CTAG	3 cut(s)	215, 237, 299
GluI	GCNGC	4 cut(s)	99, 120, 123, 229
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	133, 262
Hin1II	CATG	2 cut(s)	276, 418
HinfI	GANTC	2 cut(s)	359, 371
HpaII	CCGG	2 cut(s)	133, 262
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	169, 354
Hpy188III	TCNNGA	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	6 cut(s)	75, 84, 99, 117, 349, 406
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	276, 418
KflI	GGGWCCC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	132
KspI	CCGCGG	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	411
LpnPI	CCDG	4 cut(s)	146, 275, 373, 385
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	215, 237, 299
MluCI	AATT	2 cut(s)	158, 200
MlyI	GAGTC	2 cut(s)	353, 380
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	32, 55, 61, 67, 402
MroI	TCCGGA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	133, 262
MspR9I	CCNGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	263
NlaIII	CATG	2 cut(s)	276, 418
NlaIV	GGNNCC	3 cut(s)	267, 268, 321
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PkrI	GCNGC	4 cut(s)	100, 121, 124, 230
PleI	GAGTC	2 cut(s)	353, 379
PpsI	GAGTC	2 cut(s)	353, 379
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	267, 268, 321
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacII	CCGCGG	1 cut(s)	229
SatI	GCNGC	4 cut(s)	99, 120, 123, 229
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	353, 380
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	3 cut(s)	24, 109, 398
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	2 cut(s)	158, 200
SsiI	CCGC	6 cut(s)	62, 98, 123, 212, 226, 228
SspMI	CTAG	3 cut(s)	215, 237, 299
StyD4I	CCNGG	1 cut(s)	261
TaqI	TCGA	3 cut(s)	77, 92, 110
TasI	AATT	2 cut(s)	158, 200
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	3 cut(s)	101, 125, 231
TscAI	CASTG	1 cut(s)	392
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	3 cut(s)	215, 237, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.