Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013156

Physical Location & Seq

Genomic Coordinates Reverse (-)

43432855 .. 43435541

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTTTCCTCATCTCAAGTTTCCCAAATGCTTCAGTTTGACGGCTTCAATAGATTGGTTTTACCGCCATTATTTTGTCAATGCTGGTCTTCGATCTGTGATAACTGATCTAGGTGATGGTGATGACACCAACATGCATTGTTGGGTGCCTAAGATTCATAAACCATTCAAACCCAACATCATCTTGATTCATGGGTTCGGAGCCAATGCAATGTGGCAGTACGGTGAGCACATTCGTCATTTCACCTCTCATTTTAACGTCTACGTGCCCGATCTTGTTTTCTTTGGAAACTCTTACACGTCCAGCCAAGAACGAACTGATTTGTTTCAGGCTACATGTGTAATTAAGTTGATGCAGGCCCATAGGGTTGAAAAGACAAGTGTTGTTGGGATAAGTTATGGTGGATTTGTGGGGTATAGTATAGCGGTGAGATGTCCGGAGATGGTAGAAAAGTTGGTATTGTGTTGTGCTGGAGTTTGCATGGAGGAGAAAGATATGGAAGATGGACTGTTTAATGTTTCTAATTTAGAGGAGGCTTCAAGTATTTTGTTACCACAAACACCTCAAAAATTGAAGGAACTAATGCGATATTCATTCTTCAAGCCTGCTAAGGCCGTCCCTTCTTTTTTCCTCACCGATTTTATTAATGTAATGTGTACGAACAATGTTGAAGAGAAGAGAGAGTTGATTGGGGCAATATTGGTGAACCGAAAACTGTCTAATGTACCCAAGATCACGCAGCCCACATTAATAATATGGGGAGAGCAAGATCAAATATTCCCTTTGGAACTGGGTTACAGATTAAAAAGGCATATTGGGAAACACGGTCAACTAGTGATTATTAAGAAGGCTGGACATGCTGTGAACCTGGAACAACACAAGGAGTTTATAAAGCATTTAAAATCATTTCTTTGTGACTTATTTTGGTTTCCTCCACCATCACCAACATGGAAAGATCACTTTCACGATCAACAAAGTATATTGAATAAACTAAAACTAATGATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

337

Amino Acids

38.68

Weight (kDa)

8.62

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	58 - 291	1.8e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	60 - 297	3.8e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09430
fragaria_vesca	FvH4_2g10970
malus_domestica	MD05G1044200.v1.1
prunus_persica	Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0269171
rosa_laevigata	RLG00000013875
rosa_multiflora	Rmu_ssc0000381.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198990
rosa_rugosa	Rorug06G0045200 Rorug06G0045200
rosa_samantha	Rh6AG166000 Rh6BG171400 Rh6CG165100 Rh6DG156700
rosa_wichuraiana	Rw6G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	2 cut(s)	64, 425
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	3 cut(s)	221, 658, 726
AflIII	ACRYGT	2 cut(s)	297, 335
AgsI	TTSAA	8 cut(s)	48, 169, 371, 540, 574, 601, 671, 985
AhlI	ACTAGT	1 cut(s)	832
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	867
Alw21I	GWGCWC	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	2 cut(s)	357, 612
ApeKI	GCWGC	1 cut(s)	739
AseI	ATTAAT	2 cut(s)	645, 749
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	8 cut(s)	125, 131, 235, 236, 439, 625, 715, 933
BaeGI	GKGCMC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	4 cut(s)	110, 436, 497, 946
BceAI	ACGGC	2 cut(s)	57, 599
BciT130I	CCWGG	1 cut(s)	869
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	2 cut(s)	110, 833
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	147, 202
BmrFI	CCNGG	1 cut(s)	869
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	869
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	2 cut(s)	500, 545
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	751
BshFI	GGCC	2 cut(s)	359, 614
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	359, 614
Bsp1286I	GDGCHC	2 cut(s)	231, 270
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
BspACI	CCGC	2 cut(s)	64, 425
BspANI	GGCC	2 cut(s)	359, 614
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	147, 202
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	795
BssMI	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	4 cut(s)	224, 510, 717, 827
Bst6I	CTCTTC	2 cut(s)	666, 671
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	357, 606
BstDEI	CTNAG	2 cut(s)	150, 609
BstKTI	GATC	7 cut(s)	95, 109, 274, 735, 772, 958, 970
BstMBI	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	3 cut(s)	136, 339, 860
BstSCI	CCNGG	1 cut(s)	867
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	359, 614
BtrI	CACGTC	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	357, 606
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	220, 657, 725
CviAII	CATG	6 cut(s)	133, 191, 336, 481, 857, 948
CviQI	GTAC	3 cut(s)	220, 657, 725
DdeI	CTNAG	2 cut(s)	150, 609
DpnI	GATC	7 cut(s)	94, 108, 273, 734, 771, 957, 969
DpnII	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
DraI	TTTAAA	1 cut(s)	900
Eam1104I	CTCTTC	2 cut(s)	666, 671
EarI	CTCTTC	2 cut(s)	666, 671
Eco57I	CTGAAG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	6 cut(s)	136, 194, 339, 484, 860, 951
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	6 cut(s)	132, 190, 335, 480, 856, 947
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	2 cut(s)	110, 833
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	359, 614
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	6 cut(s)	136, 194, 339, 484, 860, 951
HincII	GTYRAC	1 cut(s)	830
HindII	GTYRAC	1 cut(s)	830
HinfI	GANTC	2 cut(s)	154, 187
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	8 cut(s)	125, 131, 235, 236, 439, 625, 715, 933
Hpy166II	GTNNAC	5 cut(s)	262, 657, 706, 830, 865
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	184, 437, 965
Hpy8I	GTNNAC	5 cut(s)	262, 657, 706, 830, 865
HpyAV	CCTTC	3 cut(s)	568, 630, 841
HpyCH4III	ACNGT	4 cut(s)	224, 510, 717, 827
HpyCH4IV	ACGT	3 cut(s)	258, 264, 299
HpyCH4V	TGCA	4 cut(s)	136, 209, 355, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	2 cut(s)	150, 609
HpySE526I	ACGT	3 cut(s)	258, 264, 299
Hsp92II	CATG	6 cut(s)	136, 194, 339, 484, 860, 951
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	110, 833
MaeII	ACGT	3 cut(s)	258, 264, 299
MaeIII	GTNAC	3 cut(s)	549, 794, 914
MalI	GATC	7 cut(s)	94, 108, 273, 734, 771, 957, 969
MboI	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
MboII	GAAGA	5 cut(s)	80, 512, 589, 683, 688
MhlI	GDGCHC	2 cut(s)	231, 270
MluCI	AATT	3 cut(s)	342, 523, 569
MnlI	CCTC	8 cut(s)	18, 256, 478, 523, 526, 573, 641, 942
Mph1103I	ATGCAT	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	8 cut(s)	255, 345, 513, 645, 749, 803, 843, 899
MslI	CAYNNNNRTG	2 cut(s)	131, 946
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	1 cut(s)	857
NdeII	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
NlaIII	CATG	6 cut(s)	136, 194, 339, 484, 860, 951
NlaIV	GGNNCC	2 cut(s)	147, 202
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	3 cut(s)	136, 339, 860
PciI	ACATGT	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	154, 187
PkrI	GCNGC	1 cut(s)	741
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	335
PshBI	ATTAAT	2 cut(s)	645, 749
PsiI	TTATAA	1 cut(s)	890
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	2 cut(s)	147, 202
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	3 cut(s)	221, 658, 726
RsaNI	GTAC	3 cut(s)	220, 657, 725
RseI	CAYNNNNRTG	2 cut(s)	131, 946
SaqAI	TTAA	8 cut(s)	255, 345, 513, 645, 749, 803, 843, 899
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	7 cut(s)	92, 106, 271, 732, 769, 955, 967
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	869
SduI	GDGCHC	2 cut(s)	231, 270
SetI	ASST	7 cut(s)	115, 248, 261, 267, 302, 565, 870
SfaNI	GCATC	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	131, 946
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	832
Sse9I	AATT	3 cut(s)	342, 523, 569
SsiI	CCGC	2 cut(s)	64, 425
SspI	AATATT	2 cut(s)	699, 777
SspMI	CTAG	2 cut(s)	110, 833
StyD4I	CCNGG	1 cut(s)	867
TaaI	ACNGT	4 cut(s)	224, 510, 717, 827
TaiI	ACGT	3 cut(s)	261, 267, 302
TaqI	TCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	342, 523, 569
TfiI	GAWTC	2 cut(s)	154, 187
Tru1I	TTAA	8 cut(s)	255, 345, 513, 645, 749, 803, 843, 899
Tru9I	TTAA	8 cut(s)	255, 345, 513, 645, 749, 803, 843, 899
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	3 cut(s)	146, 179, 582
VspI	ATTAAT	2 cut(s)	645, 749
XceI	RCATGY	3 cut(s)	136, 339, 860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	945
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	2 cut(s)	110, 833
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.