Prupe.8G059800_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013156
Physical Location & Seq
Reverse (-)
8440601 .. 8443523
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G059800.4

Sequence Viewer

Length: 984 bp
ATGTTTCCTCTTAAGCTTCCTAAATTCATCAGCCTTACGGCTTCCATAGATTGGTTTTACCGGCATTCTTTCGCCAACGCCGGCCTTCGCTCGGTTTTAACCAATCTAGGTGATGGCACCATCATGAATTGCTGGGTGCCCAAATCCCACAAACCCTACAAACCGACCCTCCTCCTCCTCCACGGCTTCGGAGCCAATGCTATGTGGCAATACGGGGAGCATCTACGACACTTTACCCCCCATTTCAACGTGTACGTGCCCGACCTCCTCTTTTTCGGCCACTCCTACACATCGTGCTTGGAACGCTCAGAGTCGTTCCAAGCGCAATGTGTAATAAGGTTGATGGAGGCCCACGGGGTTGGAAAGATGAGCATGGTGGGGATAAGCTATGGTGGGTTTGTGGCGTACAACGTGGCCTTACAGTGCCCGGGGATGGTAGAGAGGGTTGCGCTGTGCTGTGCCGGGGTGTGCTTGGAGGCGAAGGATATGGAGGAAGGGTTGTTTAGGGTGTCGAACTTGGATGAGGCTGCAAGCATTTTGTTGCCTCAGACTCCAGAGAAGCTTAAGGAATTGATGCGCTTTTCATTTTTCAAGCCTGCAAAGACCGTGCCCTCTTTTTTTCTCACGGATTTCATTCATGTGATGTGTACAGATTATGTAGAAGAAAAGAGAGACTTGATCCGGGCAATACTCACGGAGCGAAAAATGTTTAATCTTCCCAAGATCACACAGCCCACATTGATAATATGGGGACAACAGGACCAGATATTTCCGGTGGAGCTAGGGTACAGATTAAAGAGGCATGTAGGGAAAAGTGCTCAACTGGTGATTATCAAGAACGCAGGACATGCTGTGAACCTGGAAAAGCCCAAGGAGTTTGTGAAGCACCTGAAAGCCTTCTTTTATGACTCACCCTCATCTCCGTCCTCACCAACAACATGGAAAGATCACTTTCAGTTTCACATCAACAAAGTCTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

328

Amino Acids

37.26

Weight (kDa)

9.0

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09430
fragaria_vesca FvH4_2g10970
malus_domestica MD05G1044200.v1.1
prunus_persica Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269171
rosa_laevigata RLG00000013875
rosa_multiflora Rmu_ssc0000381.1_g000010
rosa_roxburghii Rroxscaffold_7G00198990
rosa_rugosa Rorug06G0045200 Rorug06G0045200
rosa_samantha Rh6AG166000 Rh6BG171400 Rh6CG165100 Rh6DG156700
rosa_wichuraiana Rw6G014330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 136
AccB7I CCANNNNNTGG 1 cut(s) 51
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 4 cut(s) 254, 407, 649, 788
AfiI CCNNNNNNNGG 3 cut(s) 51, 91, 433
AflII CTTAAG 2 cut(s) 11, 563
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 247, 592
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 4 cut(s) 16, 387, 562, 781
AluI AGCT 4 cut(s) 16, 387, 562, 781
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 2 cut(s) 666, 979
AlwI GGATC 1 cut(s) 673
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 4 cut(s) 82, 277, 348, 414
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 896
AspLEI GCGC 3 cut(s) 325, 451, 579
AspS9I GGNCC 2 cut(s) 349, 760
AsuC2I CCSGG 4 cut(s) 428, 429, 463, 683
AsuHPI GGTGA 4 cut(s) 122, 838, 903, 921
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 760
BaeGI GKGCMC 4 cut(s) 141, 261, 428, 612
BanI GGYRCC 2 cut(s) 116, 136
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 1 cut(s) 514
BccI CCATC 4 cut(s) 107, 128, 337, 427
BceAI ACGGC 2 cut(s) 54, 199
BciT130I CCWGG 1 cut(s) 860
BcnI CCSGG 4 cut(s) 428, 429, 463, 683
BcoDI GTCTC 2 cut(s) 666, 979
BfaI CTAG 2 cut(s) 107, 782
BfrI CTTAAG 2 cut(s) 11, 563
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 5 cut(s) 428, 429, 463, 683, 860
Bme18I GGWCC 1 cut(s) 760
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 349, 760
BmiI GGNNCC 3 cut(s) 118, 138, 193
BmrFI CCNGG 5 cut(s) 428, 429, 463, 683, 860
BmsI GCATC 2 cut(s) 229, 564
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 4 cut(s) 428, 429, 463, 683
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 6 cut(s) 181, 352, 427, 428, 462, 870
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 6 cut(s) 153, 183, 482, 512, 770, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 91, 433
Bse118I RCCGGY 2 cut(s) 60, 80
Bse1I ACTGG 1 cut(s) 828
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 6 cut(s) 181, 352, 427, 428, 462, 870
BseGI GGATG 2 cut(s) 438, 526
BseLI CCNNNNNNNGG 3 cut(s) 51, 91, 433
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 2 cut(s) 321, 560
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 4 cut(s) 161, 164, 167, 257
BseSI GKGCMC 4 cut(s) 141, 261, 428, 612
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 4 cut(s) 84, 279, 350, 416
BshNI GGYRCC 2 cut(s) 116, 136
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 6 cut(s) 61, 81, 428, 462, 682, 773
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 3 cut(s) 51, 91, 433
BsmAI GTCTC 2 cut(s) 666, 979
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 4 cut(s) 84, 279, 350, 416
BsoBI CYCGRG 1 cut(s) 427
Bsp1286I GDGCHC 5 cut(s) 141, 261, 428, 612, 820
Bsp1407I TGTACA 1 cut(s) 647
Bsp143I GATC 3 cut(s) 678, 723, 946
BspANI GGCC 4 cut(s) 84, 279, 350, 416
BspCNI CTCAG 2 cut(s) 320, 559
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 118, 138, 193
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 2 cut(s) 116, 136
BspTI CTTAAG 2 cut(s) 11, 563
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 60, 80
BsrGI TGTACA 1 cut(s) 647
BsrI ACTGG 1 cut(s) 828
BssAI RCCGGY 2 cut(s) 60, 80
BssECI CCNNGG 6 cut(s) 181, 352, 427, 428, 462, 870
BssMI GATC 3 cut(s) 678, 723, 946
BssT1I CCWWGG 1 cut(s) 870
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 2 cut(s) 423, 607
BstAFI CTTAAG 2 cut(s) 11, 563
BstAPI GCANNNNNTGC 1 cut(s) 848
BstAUI TGTACA 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 82, 532, 597
BstDEI CTNAG 2 cut(s) 307, 546
BstDSI CCRYGG 2 cut(s) 181, 352
BstF5I GGATG 2 cut(s) 438, 526
BstHHI GCGC 3 cut(s) 325, 451, 579
BstKTI GATC 3 cut(s) 681, 726, 949
BstMAI GTCTC 2 cut(s) 666, 979
BstMBI GATC 3 cut(s) 678, 723, 946
BstMWI GCNNNNNNNGC 2 cut(s) 303, 848
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 2 cut(s) 806, 851
BstSCI CCNGG 5 cut(s) 426, 427, 461, 681, 858
BstSLI GKGCMC 4 cut(s) 141, 261, 428, 612
BstV1I GCAGC 1 cut(s) 514
BstXI CCANNNNNNTGG 2 cut(s) 359, 939
BsuRI GGCC 4 cut(s) 84, 279, 350, 416
BtgI CCRYGG 2 cut(s) 181, 352
BtsCI GGATG 2 cut(s) 438, 526
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 3 cut(s) 82, 532, 597
CciI TCATGA 1 cut(s) 123
CfoI GCGC 3 cut(s) 325, 451, 579
Cfr10I RCCGGY 2 cut(s) 60, 80
Cfr13I GGNCC 2 cut(s) 349, 760
Cfr9I CCCGGG 1 cut(s) 427
Csp6I GTAC 4 cut(s) 253, 406, 648, 787
CviAII CATG 6 cut(s) 124, 373, 638, 803, 848, 939
CviQI GTAC 4 cut(s) 253, 406, 648, 787
DdeI CTNAG 2 cut(s) 307, 546
DpnI GATC 3 cut(s) 680, 725, 948
DpnII GATC 3 cut(s) 678, 723, 946
DraIII CACNNNGTG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 870
ErhI CCWWGG 1 cut(s) 870
FaeI CATG 6 cut(s) 127, 376, 641, 806, 851, 942
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 765
FatI CATG 6 cut(s) 123, 372, 637, 802, 847, 938
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 2 cut(s) 445, 533
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 2 cut(s) 107, 782
GlaI GCGC 3 cut(s) 324, 450, 578
GluI GCNGC 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 4 cut(s) 84, 279, 350, 416
HapII CCGG 6 cut(s) 61, 81, 428, 462, 682, 773
HhaI GCGC 3 cut(s) 325, 451, 579
Hin1II CATG 6 cut(s) 127, 376, 641, 806, 851, 942
Hin6I GCGC 3 cut(s) 323, 449, 577
HinP1I GCGC 3 cut(s) 323, 449, 577
HindIII AAGCTT 2 cut(s) 14, 560
HinfI GANTC 3 cut(s) 311, 550, 908
HpaII CCGG 6 cut(s) 61, 81, 428, 462, 682, 773
HphI GGTGA 4 cut(s) 122, 838, 903, 921
Hpy166II GTNNAC 3 cut(s) 253, 648, 856
Hpy188I TCNGA 3 cut(s) 191, 310, 549
Hpy188III TCNNGA 3 cut(s) 124, 554, 835
Hpy8I GTNNAC 3 cut(s) 253, 648, 856
HpyAV CCTTC 4 cut(s) 95, 475, 488, 907
HpyCH4III ACNGT 2 cut(s) 423, 607
HpyCH4IV ACGT 3 cut(s) 249, 255, 411
HpyCH4V TGCA 2 cut(s) 530, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 848
HpyF3I CTNAG 2 cut(s) 307, 546
HpySE526I ACGT 3 cut(s) 249, 255, 411
Hsp92II CATG 6 cut(s) 127, 376, 641, 806, 851, 942
HspAI GCGC 3 cut(s) 323, 449, 577
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 678, 723, 946
LmnI GCTCC 4 cut(s) 191, 217, 697, 778
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 229, 564
MaeI CTAG 2 cut(s) 107, 782
MaeII ACGT 3 cut(s) 249, 255, 411
MalI GATC 3 cut(s) 680, 725, 948
MboI GATC 3 cut(s) 678, 723, 946
MboII GAAGA 3 cut(s) 674, 707, 969
MhlI GDGCHC 5 cut(s) 141, 261, 428, 612, 820
MluCI AATT 3 cut(s) 23, 127, 569
MlyI GAGTC 3 cut(s) 320, 544, 902
MmeI TCCRAC 1 cut(s) 340
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 5 cut(s) 12, 98, 564, 711, 794
MslI CAYNNNNRTG 2 cut(s) 122, 638
MspCI CTTAAG 2 cut(s) 11, 563
MspI CCGG 6 cut(s) 61, 81, 428, 462, 682, 773
MspR9I CCNGG 5 cut(s) 428, 429, 463, 683, 860
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 2 cut(s) 303, 848
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 4 cut(s) 428, 429, 463, 683
NdeII GATC 3 cut(s) 678, 723, 946
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 6 cut(s) 127, 376, 641, 806, 851, 942
NlaIV GGNNCC 3 cut(s) 118, 138, 193
NspI RCATGY 2 cut(s) 806, 851
PagI TCATGA 1 cut(s) 123
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 896
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 3 cut(s) 319, 544, 902
PpsI GAGTC 3 cut(s) 319, 544, 902
Ppu21I YACGTR 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 3 cut(s) 118, 138, 193
PspPI GGNCC 2 cut(s) 349, 760
RsaI GTAC 4 cut(s) 254, 407, 649, 788
RsaNI GTAC 4 cut(s) 253, 406, 648, 787
RseI CAYNNNNRTG 2 cut(s) 122, 638
SaqAI TTAA 5 cut(s) 12, 98, 564, 711, 794
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 3 cut(s) 678, 723, 946
Sau96I GGNCC 2 cut(s) 349, 760
SchI GAGTC 3 cut(s) 320, 544, 902
ScrFI CCNGG 5 cut(s) 428, 429, 463, 683, 860
SduI GDGCHC 5 cut(s) 141, 261, 428, 612, 820
SfaNI GCATC 2 cut(s) 229, 564
SinI GGWCC 1 cut(s) 760
SmaI CCCGGG 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 122, 638
SmlI CTYRAG 2 cut(s) 11, 563
SmoI CTYRAG 2 cut(s) 11, 563
Sse9I AATT 3 cut(s) 23, 127, 569
SspMI CTAG 2 cut(s) 107, 782
StyD4I CCNGG 5 cut(s) 426, 427, 461, 681, 858
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 2 cut(s) 423, 607
TaiI ACGT 3 cut(s) 252, 258, 414
TaqI TCGA 1 cut(s) 512
TasI AATT 3 cut(s) 23, 127, 569
TatI WGTACW 1 cut(s) 647
Tru1I TTAA 5 cut(s) 12, 98, 564, 711, 794
Tru9I TTAA 5 cut(s) 12, 98, 564, 711, 794
TscAI CASTG 1 cut(s) 428
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 6 cut(s) 16, 140, 573, 622, 626, 969
TspGWI ACGGA 3 cut(s) 641, 710, 912
TspMI CCCGGG 1 cut(s) 427
TspRI CASTG 1 cut(s) 428
Van91I CCANNNNNTGG 1 cut(s) 51
Vha464I CTTAAG 2 cut(s) 11, 563
VpaK11BI GGWCC 1 cut(s) 760
XapI RAATTY 1 cut(s) 23
XceI RCATGY 2 cut(s) 806, 851
XmaI CCCGGG 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 2 cut(s) 107, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.