Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013156

Physical Location & Seq

Genomic Coordinates Reverse (-)

7579574 .. 7581442

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1044200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTTCCGCTTAAGCTTCCGAAACGTATCAGCTTTACGGCTTCCGTTGATTGGTTTTATCGGCATTATTTTGCCAATGCCGGTCTCCGCTCAGTTTTAACAAATCTGGGTGACGGCACCACCATCCATTGCTGGGTGCCTAAATCCCCCAAATCATACAAACCCACCCTTCTCCTTCTCCACGGCTTTGGAGCCAACGCCATGTGGCAATACGGCGAGCATCTCCGCCACTTCACCACCCGCTTCAATGTGTACGTGCCCGATCTCCTCTTCTTTGGGCACTCTTGCTCGTCACGCCTGGAACGTACAGAGTCGTTCCAGGCAGAGTCCATAATAAGGTTGATGAAGTCTCATGGGGTTGGGAAGATGAGCGTGGTGGGGATAAGCTATGGTGGTTTTGTGGCGTACAACGTGGCCGTGCAGTGTCCGGAGATGGTAGAGAGGGTGGCGCTGTGTTGTGCCGGGGTGTGCTTGGAGGAGAAGGATATGGAAGAAGGGTTGTTTAGGGTTTCAGATTTGGATGAGGCTGCAAGCATTTTGTTGCCTCAGACTCCAGAGAAGCTGAAGGAATTGATGAGGTATTCATTTTTCAAGCCCGCCCATGGTCTGCCCTCTTTTTTCCTCGCGGATTTCATTCATGTCATGTGTACAGACTATGTAGAAGAGAAGAGAGACTTGATCCGGGCTATACTAACGGAGAGAAAGCTGTCTAATCTACCCAAGATCTCACAGCCCACACTGGTAATATGGGGACAAGAAGATCAGATATTCCCGGTGGAACTAGGGTACAGATTAAAGAGTCATGTAGGTAAAGGTGCGGAACTAGTCGTTATAAAGAACGCAGGACATGCTGTGAACCTGGAAAAGCCCAAGGAGTTTGCCAAGCACCTAAAATCTTTCCTCTGCGACTCACATTCAACTCCGCCATCACCACCAACATGGAAAGATCACTTTCATTTCACATCAACAAAGTGTATTAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

329

Amino Acids

37.2

Weight (kDa)

8.63

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	55 - 290	2.4e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	57 - 295	2.8e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09430
fragaria_vesca	FvH4_2g10970
malus_domestica	MD05G1044200.v1.1
prunus_persica	Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1 Prupe.8G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0269171
rosa_laevigata	RLG00000013875
rosa_multiflora	Rmu_ssc0000381.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198990
rosa_rugosa	Rorug06G0045200 Rorug06G0045200
rosa_samantha	Rh6AG166000 Rh6BG171400 Rh6CG165100 Rh6DG156700
rosa_wichuraiana	Rw6G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	833
AccB1I	GGYRCC	2 cut(s)	116, 136
AccBSI	CCGCTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	626
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	8 cut(s)	8, 88, 226, 241, 597, 626, 818, 923
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	5 cut(s)	254, 307, 407, 649, 788
AfiI	CCNNNNNNNGG	4 cut(s)	51, 133, 336, 602
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	247, 592, 918
AhlI	ACTAGT	1 cut(s)	823
AjnI	CCWGG	3 cut(s)	297, 318, 858
AluBI	AGCT	5 cut(s)	16, 33, 387, 562, 706
AluI	AGCT	5 cut(s)	16, 33, 387, 562, 706
Alw26I	GTCTC	3 cut(s)	89, 354, 666
AlwI	GGATC	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	527
AseI	ATTAAT	1 cut(s)	978
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	3 cut(s)	463, 683, 773
AsuHPI	GGTGA	3 cut(s)	122, 226, 921
BaeGI	GKGCMC	2 cut(s)	261, 282
BanI	GGYRCC	2 cut(s)	116, 136
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	131, 427, 934
BceAI	ACGGC	5 cut(s)	54, 130, 199, 229, 401
BciT130I	CCWGG	3 cut(s)	299, 320, 860
BcnI	CCSGG	3 cut(s)	463, 683, 773
BcoDI	GTCTC	3 cut(s)	89, 354, 666
BcuI	ACTAGT	1 cut(s)	823
BfaI	CTAG	2 cut(s)	782, 824
BfoI	RGCGCY	1 cut(s)	452
BfrI	CTTAAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	6 cut(s)	299, 320, 463, 683, 773, 860
BmiI	GGNNCC	3 cut(s)	118, 138, 193
BmrFI	CCNGG	6 cut(s)	299, 320, 463, 683, 773, 860
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	537
BpuMI	CCSGG	3 cut(s)	463, 683, 773
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	181, 462, 601, 870
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 133, 336, 602
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	299, 320, 860
BseDI	CCNNGG	4 cut(s)	181, 462, 601, 870
BseGI	GGATG	2 cut(s)	123, 526
BseLI	CCNNNNNNNGG	4 cut(s)	51, 133, 336, 602
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	105, 560
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	2 cut(s)	257, 491
BseSI	GKGCMC	2 cut(s)	261, 282
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	116, 136
BsiSI	CCGG	5 cut(s)	81, 428, 462, 682, 773
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	4 cut(s)	51, 133, 336, 602
BsmAI	GTCTC	3 cut(s)	89, 354, 666
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	261, 282
Bsp13I	TCCGGA	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	647
Bsp143I	GATC	5 cut(s)	262, 678, 723, 760, 946
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	8 cut(s)	8, 88, 226, 241, 597, 626, 818, 923
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	104, 559
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	983
BspLI	GGNNCC	3 cut(s)	118, 138, 193
BspPI	GGATC	1 cut(s)	673
BspT107I	GGYRCC	2 cut(s)	116, 136
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	744
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	4 cut(s)	181, 462, 601, 870
BssMI	GATC	5 cut(s)	262, 678, 723, 760, 946
BssT1I	CCWWGG	2 cut(s)	601, 870
Bst2UI	CCWGG	3 cut(s)	299, 320, 860
Bst6I	CTCTTC	3 cut(s)	275, 657, 662
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	218, 532, 597
BstDEI	CTNAG	2 cut(s)	91, 546
BstDSI	CCRYGG	2 cut(s)	181, 601
BstF5I	GGATG	2 cut(s)	123, 526
BstFNI	CGCG	1 cut(s)	626
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	5 cut(s)	265, 681, 726, 763, 949
BstMAI	GTCTC	3 cut(s)	89, 354, 666
BstMBI	GATC	5 cut(s)	262, 678, 723, 760, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 848
BstNI	CCWGG	3 cut(s)	299, 320, 860
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	6 cut(s)	297, 318, 461, 681, 771, 858
BstSLI	GKGCMC	2 cut(s)	261, 282
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	723
BstXI	CCANNNNNNTGG	2 cut(s)	188, 939
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	2 cut(s)	181, 601
BtsCI	GGATG	2 cut(s)	123, 526
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	428, 737
Cac8I	GCNNGC	3 cut(s)	218, 532, 597
CciI	TCATGA	1 cut(s)	983
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	80
Csp6I	GTAC	5 cut(s)	253, 306, 406, 648, 787
CviAII	CATG	9 cut(s)	202, 353, 602, 638, 643, 803, 848, 939, 984
CviQI	GTAC	5 cut(s)	253, 306, 406, 648, 787
DdeI	CTNAG	2 cut(s)	91, 546
DpnI	GATC	5 cut(s)	264, 680, 725, 762, 948
DpnII	GATC	5 cut(s)	262, 678, 723, 760, 946
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	275, 657, 662
EarI	CTCTTC	3 cut(s)	275, 657, 662
EciI	GGCGGA	2 cut(s)	215, 912
Eco130I	CCWWGG	2 cut(s)	601, 870
Eco31I	GGTCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	297, 318, 858
EcoT14I	CCWWGG	2 cut(s)	601, 870
ErhI	CCWWGG	2 cut(s)	601, 870
FaeI	CATG	9 cut(s)	205, 356, 605, 641, 646, 806, 851, 942, 987
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	9 cut(s)	201, 352, 601, 637, 642, 802, 847, 938, 983
FauI	CCCGC	2 cut(s)	248, 604
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	110, 533
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	782, 824
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	528
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	5 cut(s)	81, 428, 462, 682, 773
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	9 cut(s)	205, 356, 605, 641, 646, 806, 851, 942, 987
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	311, 326, 550, 799, 908
HpaII	CCGG	5 cut(s)	81, 428, 462, 682, 773
HphI	GGTGA	3 cut(s)	122, 226, 921
Hpy166II	GTNNAC	3 cut(s)	253, 648, 856
Hpy188I	TCNGA	4 cut(s)	21, 514, 549, 765
Hpy188III	TCNNGA	3 cut(s)	428, 554, 984
Hpy8I	GTNNAC	3 cut(s)	253, 648, 856
HpyAV	CCTTC	5 cut(s)	179, 185, 475, 488, 559
HpyCH4IV	ACGT	4 cut(s)	25, 255, 304, 411
HpyCH4V	TGCA	2 cut(s)	421, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 848
HpyF3I	CTNAG	2 cut(s)	91, 546
HpySE526I	ACGT	4 cut(s)	25, 255, 304, 411
Hsp92II	CATG	9 cut(s)	205, 356, 605, 641, 646, 806, 851, 942, 987
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	262, 678, 723, 760, 946
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	782, 824
MaeII	ACGT	4 cut(s)	25, 255, 304, 411
MaeIII	GTNAC	2 cut(s)	110, 291
MalI	GATC	5 cut(s)	264, 680, 725, 762, 948
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	5 cut(s)	262, 678, 723, 760, 946
MboII	GAAGA	6 cut(s)	262, 376, 503, 674, 679, 770
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	2 cut(s)	261, 282
MluCI	AATT	2 cut(s)	569, 979
MlyI	GAGTC	5 cut(s)	320, 335, 544, 808, 902
MnlI	CCTC	9 cut(s)	278, 435, 469, 517, 555, 570, 622, 632, 911
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	4 cut(s)	12, 98, 794, 978
MslI	CAYNNNNRTG	1 cut(s)	937
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	5 cut(s)	81, 428, 462, 682, 773
MspR9I	CCNGG	6 cut(s)	299, 320, 463, 683, 773, 860
MvaI	CCWGG	3 cut(s)	299, 320, 860
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	294, 848
NciI	CCSGG	3 cut(s)	463, 683, 773
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	5 cut(s)	262, 678, 723, 760, 946
NlaIII	CATG	9 cut(s)	205, 356, 605, 641, 646, 806, 851, 942, 987
NlaIV	GGNNCC	3 cut(s)	118, 138, 193
NmuCI	GTSAC	2 cut(s)	110, 291
NspI	RCATGY	1 cut(s)	851
PagI	TCATGA	1 cut(s)	983
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	5 cut(s)	319, 334, 544, 807, 902
PpsI	GAGTC	5 cut(s)	319, 334, 544, 807, 902
Ppu21I	YACGTR	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	978
PsiI	TTATAA	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	297, 318, 858
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	3 cut(s)	297, 318, 858
PspN4I	GGNNCC	3 cut(s)	118, 138, 193
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	5 cut(s)	254, 307, 407, 649, 788
RsaNI	GTAC	5 cut(s)	253, 306, 406, 648, 787
RseI	CAYNNNNRTG	1 cut(s)	937
SaqAI	TTAA	4 cut(s)	12, 98, 794, 978
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	5 cut(s)	262, 678, 723, 760, 946
SchI	GAGTC	5 cut(s)	320, 335, 544, 808, 902
ScrFI	CCNGG	6 cut(s)	299, 320, 463, 683, 773, 860
SduI	GDGCHC	2 cut(s)	261, 282
SfaNI	GCATC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	823
Sse9I	AATT	2 cut(s)	569, 979
SsiI	CCGC	8 cut(s)	8, 88, 226, 241, 597, 626, 818, 923
SspMI	CTAG	2 cut(s)	782, 824
StyD4I	CCNGG	6 cut(s)	297, 318, 461, 681, 771, 858
StyI	CCWWGG	2 cut(s)	601, 870
TaiI	ACGT	4 cut(s)	28, 258, 307, 414
TasI	AATT	2 cut(s)	569, 979
TatI	WGTACW	1 cut(s)	647
Tru1I	TTAA	4 cut(s)	12, 98, 794, 978
Tru9I	TTAA	4 cut(s)	12, 98, 794, 978
TscAI	CASTG	2 cut(s)	428, 744
TseFI	GTSAC	2 cut(s)	110, 291
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	110, 291
TspDTI	ATGAA	6 cut(s)	359, 573, 622, 626, 944, 972
TspGWI	ACGGA	2 cut(s)	34, 710
TspRI	CASTG	2 cut(s)	428, 744
Vha464I	CTTAAG	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	978
XceI	RCATGY	1 cut(s)	851
XspI	CTAG	2 cut(s)	782, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.