Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016570

Physical Location & Seq

Genomic Coordinates Reverse (-)

10119925 .. 10122710

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCCATCACCCCTGAGCATAGGCTTATCATCTCCAATCTTGCCGCCAAAGCATCATCCTCACTCGTCCCGCCCTTCCCGCCAAACCACAATGGCAACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGAGCAGTACTAGTCTGATAGAGTATGTGGGCCAAGGAGGTGGCCATGTGGGTGATGATCTTGTGCTGCTCTTCCATCACATAGAGTACGCCTGCAAGAGAATCGCTGCTCTTGTCGCCTCTCCTTACAATTCTACCCTTTCCAAACGCATGCCTCTCCCCTCCTCTTCTGCTGACCGAGATGCCCCCAAGCCCCTCGACATTCTCTCCAATGAAATCATTTTGTCATCTCTTAGAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCGGTTTGGATATCTGATGATGGCCCGTATGTAGTAGTAACAGATCCTCTAGACGGTTCACGAAACATTGAAGCATCCATTCCCACTGGAACAATCTTTGGGATTTATAAACGCCTTGCAGAGCTGGATCATCTACCAAAGGAGGAGAAAGCTTTGTTGAATTCACTCCAGGCTGGAACTAGGCTTGTAGCTGCTGGTTATGTTCTTTATTCATCAGCCACAATATTCTGTACCAGCTTTGGTTCTGGAACACATGCATTTACGCTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGCTTAAAAATTCCTCCTCGCGGACAAATATACTCTGTAAATGATGCTCGATACTTTGACTGGCCTGAAGGGTTAAGGAAGTATATAGACACTGTGAGACAAGGGAAAGGCAGATACCCAAAGAAGTATTCTGCCCGTTATATCTGTTCTTTGGTAGCTGATCTTCATCGAACTCTGCTGTATGGTGGTGTTGCAATGAATCCGAGGGACCATCTACGTCTTGTTTATGAAGCTAACCCTCTTAGCTTTCTAGTGGAGCAAGCTGGGGGCAAGGGTTCTGATGGTAAAAATAGAATTCTTTCAATACAGCCAATCAAGCTGCATCAAAGGCTGCCCCTATTTTTGGGAAGTCTTGAGGACATGGATGAGTTAGAGAGTTACGGAGATGTACAGCAGAAAGTGAACCCGGGATATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

378

Amino Acids

41.24

Weight (kDa)

6.67

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	61 - 237	4.3e-36	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	241 - 364	3.4e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64380
fragaria_vesca	FvH4_2g11590
malus_domestica	MD05G1048200.v1.1
prunus_persica	Prupe.8G070500_v2.0.a1
pyrus_communis	pycom05g03990
rosa_chinensis	RchiOBHm_Chr6g0270781
rosa_laevigata	RLG00000013769
rosa_multiflora	Rmu_sc0000642.1_g000021
rosa_roxburghii	Rroxscaffold_7G00197600
rosa_rugosa	Rorug06G0056600
rosa_samantha	Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana	Rw6G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccII	CGCG	1 cut(s)	732
AciI	CCGC	4 cut(s)	44, 70, 79, 732
AclWI	GGATC	3 cut(s)	446, 543, 684
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	4 cut(s)	364, 568, 720, 1005
AcuI	CTGAAG	2 cut(s)	375, 798
AfaI	GTAC	4 cut(s)	136, 215, 640, 1101
AfiI	CCNNNNNNNGG	3 cut(s)	461, 731, 1054
AgsI	TTSAA	4 cut(s)	479, 568, 684, 1014
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	823, 855
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	446, 543, 684
Ama87I	CYCGRG	1 cut(s)	1117
AoxI	GGCC	4 cut(s)	157, 169, 430, 773
ApeKI	GCWGC	5 cut(s)	193, 233, 599, 1030, 1042
ApoI	RAATTY	4 cut(s)	364, 568, 720, 1005
Asp700I	GAANNNNTTC	1 cut(s)	1009
AspS9I	GGNCC	3 cut(s)	157, 431, 919
AsuC2I	CCSGG	2 cut(s)	1118, 1119
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	1117
AvaII	GGWCC	1 cut(s)	919
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BalI	TGGCCA	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	858, 890
BbvI	GCAGC	5 cut(s)	180, 220, 586, 1017, 1029
BccI	CCATC	5 cut(s)	13, 210, 422, 930, 986
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	1118, 1119
BcoDI	GTCTC	1 cut(s)	802
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	4 cut(s)	138, 458, 588, 962
BisI	GCNGC	6 cut(s)	44, 194, 234, 600, 1031, 1043
BlsI	GCNGC	6 cut(s)	45, 195, 235, 601, 1032, 1044
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	3 cut(s)	578, 1118, 1119
Bme18I	GGWCC	1 cut(s)	919
BmeT110I	CYCGRG	1 cut(s)	1117
BmgT120I	GGNCC	3 cut(s)	157, 431, 919
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	3 cut(s)	578, 1118, 1119
BmsI	GCATC	5 cut(s)	61, 298, 491, 745, 1042
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	1085
BpuMI	CCSGG	2 cut(s)	1118, 1119
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	160, 914, 1117
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 731, 1054
Bse1I	ACTGG	2 cut(s)	499, 776
Bse3DI	GCAATG	1 cut(s)	912
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	160, 914, 1117
BseGI	GGATG	3 cut(s)	55, 482, 1081
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	461, 731, 1054
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	499, 776
BseRI	GAGGAG	3 cut(s)	280, 566, 717
BseXI	GCAGC	5 cut(s)	180, 220, 586, 1017, 1029
BseYI	CCCAGC	1 cut(s)	974
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	159, 171, 432, 775
BsiHKCI	CYCGRG	1 cut(s)	1117
BsiSI	CCGG	2 cut(s)	410, 1118
BslFI	GGGAC	2 cut(s)	52, 932
BslI	CCNNNNNNNGG	3 cut(s)	461, 731, 1054
BsmAI	GTCTC	1 cut(s)	802
BsmFI	GGGAC	2 cut(s)	52, 932
BsnI	GGCC	4 cut(s)	159, 171, 432, 775
BsoBI	CYCGRG	1 cut(s)	1117
Bsp1407I	TGTACA	1 cut(s)	1099
Bsp143I	GATC	5 cut(s)	184, 451, 535, 676, 871
BspACI	CCGC	4 cut(s)	44, 70, 79, 732
BspANI	GGCC	4 cut(s)	159, 171, 432, 775
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	920
BspPI	GGATC	3 cut(s)	446, 543, 684
BspQI	GCTCTTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	1099
BsrI	ACTGG	2 cut(s)	499, 776
BssECI	CCNNGG	3 cut(s)	160, 914, 1117
BssMI	GATC	5 cut(s)	184, 451, 535, 676, 871
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	464, 805
Bst6I	CTCTTC	2 cut(s)	203, 298
BstAUI	TGTACA	1 cut(s)	1099
BstC8I	GCNNGC	3 cut(s)	220, 278, 972
BstDEI	CTNAG	3 cut(s)	14, 359, 953
BstF5I	GGATG	3 cut(s)	55, 482, 1081
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	5 cut(s)	187, 454, 538, 679, 874
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	5 cut(s)	184, 451, 535, 676, 871
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 78, 242, 386, 1027, 1039
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	280, 665
BstSCI	CCNGG	3 cut(s)	576, 1116, 1117
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	180, 220, 586, 1017, 1029
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	4 cut(s)	159, 171, 432, 775
BtsCI	GGATG	3 cut(s)	55, 482, 1081
BtsIMutI	CAGTG	2 cut(s)	492, 801
Cac8I	GCNNGC	3 cut(s)	220, 278, 972
Cfr13I	GGNCC	3 cut(s)	157, 431, 919
Cfr9I	CCCGGG	1 cut(s)	1117
Csp6I	GTAC	4 cut(s)	135, 214, 639, 1100
CviAII	CATG	5 cut(s)	173, 277, 385, 662, 1072
CviQI	GTAC	4 cut(s)	135, 214, 639, 1100
DdeI	CTNAG	3 cut(s)	14, 359, 953
DpnI	GATC	5 cut(s)	186, 453, 537, 678, 873
DpnII	GATC	5 cut(s)	184, 451, 535, 676, 871
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	203, 298
EarI	CTCTTC	2 cut(s)	203, 298
Eco130I	CCWWGG	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	375, 798
Eco88I	CYCGRG	1 cut(s)	1117
EcoRI	GAATTC	2 cut(s)	568, 1005
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	5 cut(s)	176, 280, 388, 665, 1075
FaqI	GGGAC	2 cut(s)	52, 932
FatI	CATG	5 cut(s)	172, 276, 384, 661, 1071
FauI	CCCGC	2 cut(s)	77, 86
Fnu4HI	GCNGC	6 cut(s)	44, 194, 234, 600, 1031, 1043
FokI	GGATG	3 cut(s)	42, 469, 1088
Fsp4HI	GCNGC	6 cut(s)	44, 194, 234, 600, 1031, 1043
FspBI	CTAG	4 cut(s)	138, 458, 588, 962
GluI	GCNGC	6 cut(s)	44, 194, 234, 600, 1031, 1043
GsaI	CCCAGC	1 cut(s)	978
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	159, 171, 432, 775
HapII	CCGG	2 cut(s)	410, 1118
Hin1II	CATG	5 cut(s)	176, 280, 388, 665, 1075
HindIII	AAGCTT	2 cut(s)	558, 712
HinfI	GANTC	2 cut(s)	228, 910
HpaII	CCGG	2 cut(s)	410, 1118
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	467, 1114
Hpy188I	TCNGA	5 cut(s)	144, 394, 424, 915, 991
Hpy188III	TCNNGA	5 cut(s)	369, 458, 468, 654, 1064
Hpy8I	GTNNAC	2 cut(s)	467, 1114
HpyAV	CCTTC	3 cut(s)	84, 111, 773
HpyCH4III	ACNGT	2 cut(s)	464, 805
HpyCH4IV	ACGT	1 cut(s)	928
HpyCH4V	TGCA	5 cut(s)	222, 527, 665, 905, 1033
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 78, 242, 386, 1027, 1039
HpyF3I	CTNAG	3 cut(s)	14, 359, 953
HpySE526I	ACGT	1 cut(s)	928
Hsp92II	CATG	5 cut(s)	176, 280, 388, 665, 1075
Kzo9I	GATC	5 cut(s)	184, 451, 535, 676, 871
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	129, 967
Lsp1109I	GCAGC	5 cut(s)	180, 220, 586, 1017, 1029
LweI	GCATC	5 cut(s)	61, 298, 491, 745, 1042
MaeI	CTAG	4 cut(s)	138, 458, 588, 962
MaeII	ACGT	1 cut(s)	928
MaeIII	GTNAC	2 cut(s)	445, 1088
MalI	GATC	5 cut(s)	186, 453, 537, 678, 873
MboI	GATC	5 cut(s)	184, 451, 535, 676, 871
MflI	RGATCY	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	5 cut(s)	256, 364, 568, 720, 1005
MluNI	TGGCCA	1 cut(s)	171
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	1009
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	2 cut(s)	716, 785
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	2 cut(s)	410, 1118
MspR9I	CCNGG	3 cut(s)	578, 1118, 1119
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	49, 78, 242, 386, 1027, 1039
NciI	CCSGG	2 cut(s)	1118, 1119
NdeII	GATC	5 cut(s)	184, 451, 535, 676, 871
NlaIII	CATG	5 cut(s)	176, 280, 388, 665, 1075
NlaIV	GGNNCC	1 cut(s)	920
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	280, 665
PaeI	GCATGC	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	1009
PfeI	GAWTC	2 cut(s)	228, 910
PkrI	GCNGC	6 cut(s)	45, 195, 235, 601, 1032, 1044
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	974
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	3 cut(s)	157, 431, 919
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	4 cut(s)	136, 215, 640, 1101
RsaNI	GTAC	4 cut(s)	135, 214, 639, 1100
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	716, 785
SatI	GCNGC	6 cut(s)	44, 194, 234, 600, 1031, 1043
Sau3AI	GATC	5 cut(s)	184, 451, 535, 676, 871
Sau96I	GGNCC	3 cut(s)	157, 431, 919
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	3 cut(s)	578, 1118, 1119
SfaNI	GCATC	5 cut(s)	61, 298, 491, 745, 1042
SinI	GGWCC	1 cut(s)	919
SmaI	CCCGGG	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
SpeI	ACTAGT	1 cut(s)	137
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	5 cut(s)	256, 364, 568, 720, 1005
SsiI	CCGC	4 cut(s)	44, 70, 79, 732
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	4 cut(s)	138, 458, 588, 962
StyD4I	CCNGG	3 cut(s)	576, 1116, 1117
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	464, 805
TaiI	ACGT	1 cut(s)	931
TaqI	TCGA	3 cut(s)	324, 760, 880
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	256, 364, 568, 720, 1005
TatI	WGTACW	2 cut(s)	134, 1099
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	228, 910
Tru1I	TTAA	2 cut(s)	716, 785
Tru9I	TTAA	2 cut(s)	716, 785
TscAI	CASTG	2 cut(s)	499, 808
TseI	GCWGC	5 cut(s)	193, 233, 599, 1030, 1042
TspDTI	ATGAA	6 cut(s)	354, 609, 685, 866, 923, 954
TspGWI	ACGGA	1 cut(s)	1107
TspMI	CCCGGG	1 cut(s)	1117
TspRI	CASTG	2 cut(s)	499, 808
VpaK11BI	GGWCC	1 cut(s)	919
XapI	RAATTY	4 cut(s)	364, 568, 720, 1005
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	2 cut(s)	280, 665
XmaI	CCCGGG	1 cut(s)	1117
XmnI	GAANNNNTTC	1 cut(s)	1009
XspI	CTAG	4 cut(s)	138, 458, 588, 962
ZrmI	AGTACT	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.