Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016570

Physical Location & Seq

Genomic Coordinates Forward (+)

41918067 .. 41921924

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCATCATCCACGAGTAGGAGTATAGGCTTATGCCCATCTCCAATCTTCTTCCCACCAAAGCATTATTCCCACTTGTCCCGCCAAACAATGAGAATGGCAACTCCTCCTCCTCCTTATGCGGTGGCTTCTTCAGGCAAAGCTAGTACTACTCTTACAGAGTACGTGGGTGATGGAGGTGTCGGTGTGGGAGATGATCTTGTGCTGCTCTTCCATCACATAGAGTATGCCTGCAAGAGAATCGCTGCTCTTGTGGCCTCTCCTTATAATAATTCAAGCCTTGCCAAACCCATGTCTCTGCCCACTGCTACTGGGTCTGGGTCTGACCGAGATGCACCCAAGCCCCTCGACATTGTTTCGAATGAAATCATCTTTTCATCTCTTAGAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCAGTTTGGATATCTGATGATGGTCCGTACGTAGTAGTAACAGATCCTCTAGATGGTTCACGAAACATTGAAGCATCCATTCCCACCGGAACAATCTTTGGGATTTATAAACGACTTGCAGAGCTCGATCATCTACCAAAGGAGGAGAAGGCTTTGCTGAATTCACTCCAGGTTGGAACTAGGCTTGTAGCTGCTGGCTATGTTCTTTATTCATCAGCCACAATATTCTGTACCAGCTTTGGTGCAGGAACACATGCATTTACGCTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGTTTAACAATTCCTCCTCGCGGACAAATATATTCTGTAAATGATGCTCGATACTTTGACTGGCCTGAAGGGTTAAGGAAGTATATAGACACTGTCAGACAAGGGAAAGGCAGATACCCCAAGAAGTATTCTGCCCGTTATATCTGTTCTTTGGTAGCTGATTTTCATCGAACTCTGCTGTATGGTGGAGTTGCAATGAATCCAAGGGACCATCTACGTCTTGTTTATGAAGCTAACCCTCTTAGCTTCCTGGTGGAGCAAGCTGGGGGTAAGGGTTCTGATGGTAAAAATAGAATTCTTTCAATACAGCCAATCAAGCTGCATCAAAGGCTGCCCCTATTTCTGGGAAGTCTAGAGGACATGGATGAGTTAGAGAGTTATGGAGATGTACAGCAGAAAGTGAACCCGGGATATGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

385

Amino Acids

42.01

Weight (kDa)

6.42

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	65 - 245	1.2e-36	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	249 - 372	2e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64380
fragaria_vesca	FvH4_2g11590
malus_domestica	MD05G1048200.v1.1
prunus_persica	Prupe.8G070500_v2.0.a1
pyrus_communis	pycom05g03990
rosa_chinensis	RchiOBHm_Chr6g0270781
rosa_laevigata	RLG00000013769
rosa_multiflora	Rmu_sc0000642.1_g000021
rosa_roxburghii	Rroxscaffold_7G00197600
rosa_rugosa	Rorug06G0056600
rosa_samantha	Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana	Rw6G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 540
AccII	CGCG	1 cut(s)	756
AciI	CCGC	3 cut(s)	82, 122, 756
AclWI	GGATC	2 cut(s)	470, 708
AcsI	RAATTY	3 cut(s)	388, 592, 1029
AcuI	CTGAAG	3 cut(s)	117, 399, 822
AfaI	GTAC	5 cut(s)	148, 164, 461, 664, 1125
AfiI	CCNNNNNNNGG	4 cut(s)	18, 485, 755, 1078
AgsI	TTSAA	4 cut(s)	276, 503, 708, 1038
AjnI	CCWGG	2 cut(s)	600, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	470, 708
Ama87I	CYCGRG	1 cut(s)	1141
AoxI	GGCC	2 cut(s)	255, 797
ApeKI	GCWGC	5 cut(s)	205, 245, 623, 1054, 1066
ApoI	RAATTY	3 cut(s)	388, 592, 1029
Asp700I	GAANNNNTTC	1 cut(s)	1033
AspS9I	GGNCC	2 cut(s)	455, 943
AsuC2I	CCSGG	2 cut(s)	1142, 1143
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	1141
AvaII	GGWCC	2 cut(s)	455, 943
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanII	GRGCYC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	5 cut(s)	192, 232, 610, 1041, 1053
BccI	CCATC	7 cut(s)	46, 167, 222, 446, 479, 954, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	2 cut(s)	602, 986
BcnI	CCSGG	2 cut(s)	1142, 1143
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	4 cut(s)	144, 482, 612, 1088
BisI	GCNGC	5 cut(s)	206, 246, 624, 1055, 1067
BlsI	GCNGC	5 cut(s)	207, 247, 625, 1056, 1068
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	4 cut(s)	602, 986, 1142, 1143
Bme18I	GGWCC	2 cut(s)	455, 943
BmeT110I	CYCGRG	1 cut(s)	1141
BmgT120I	GGNCC	2 cut(s)	455, 943
BmiI	GGNNCC	1 cut(s)	944
BmrFI	CCNGG	4 cut(s)	602, 986, 1142, 1143
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	5 cut(s)	14, 322, 515, 769, 1066
BmuI	ACTGGG	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	417, 584
Bpu14I	TTCGAA	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	1142, 1143
BsaAI	YACGTR	2 cut(s)	166, 463
BsaBI	GATNNNNATC	1 cut(s)	900
BsaJI	CCNNGG	2 cut(s)	938, 1141
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 733, 763
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 485, 755, 1078
Bse1I	ACTGG	3 cut(s)	316, 434, 800
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	602, 986
BseDI	CCNNGG	2 cut(s)	938, 1141
BseGI	GGATG	3 cut(s)	8, 506, 1105
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	4 cut(s)	18, 485, 755, 1078
BseMI	GCAATG	1 cut(s)	936
BseNI	ACTGG	3 cut(s)	316, 434, 800
BseRI	GAGGAG	5 cut(s)	96, 99, 102, 590, 741
BseXI	GCAGC	5 cut(s)	192, 232, 610, 1041, 1053
BseYI	CCCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	257, 799
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	1141
BsiSI	CCGG	2 cut(s)	519, 1142
BsiWI	CGTACG	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	64, 956
BslI	CCNNNNNNNGG	4 cut(s)	18, 485, 755, 1078
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	2 cut(s)	64, 956
BsnI	GGCC	2 cut(s)	257, 799
BsoBI	CYCGRG	1 cut(s)	1141
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp1407I	TGTACA	1 cut(s)	1123
Bsp143I	GATC	4 cut(s)	196, 475, 559, 700
BspACI	CCGC	3 cut(s)	82, 122, 756
BspANI	GGCC	2 cut(s)	257, 799
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	944
BspPI	GGATC	2 cut(s)	470, 708
BspQI	GCTCTTC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	936
BsrGI	TGTACA	1 cut(s)	1123
BsrI	ACTGG	3 cut(s)	316, 434, 800
BssECI	CCNNGG	2 cut(s)	938, 1141
BssMI	GATC	4 cut(s)	196, 475, 559, 700
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	938
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	602, 986
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	1123
BstBAI	YACGTR	2 cut(s)	166, 463
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	232, 628, 996
BstDEI	CTNAG	2 cut(s)	383, 977
BstF5I	GGATG	3 cut(s)	8, 506, 1105
BstFNI	CGCG	1 cut(s)	756
BstKTI	GATC	4 cut(s)	199, 478, 562, 703
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	196, 475, 559, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 410, 1051, 1063
BstNI	CCWGG	2 cut(s)	602, 986
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	4 cut(s)	600, 984, 1140, 1141
BstSNI	TACGTA	1 cut(s)	463
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	5 cut(s)	192, 232, 610, 1041, 1053
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	257, 799
BtsCI	GGATG	3 cut(s)	8, 506, 1105
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 825
Cac8I	GCNNGC	3 cut(s)	232, 628, 996
Cfr13I	GGNCC	2 cut(s)	455, 943
Cfr9I	CCCGGG	1 cut(s)	1141
Csp6I	GTAC	5 cut(s)	147, 163, 460, 663, 1124
CviAII	CATG	4 cut(s)	292, 409, 686, 1096
CviQI	GTAC	5 cut(s)	147, 163, 460, 663, 1124
DdeI	CTNAG	2 cut(s)	383, 977
DpnI	GATC	4 cut(s)	198, 477, 561, 702
DpnII	GATC	4 cut(s)	196, 475, 559, 700
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	556
Eco105I	TACGTA	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	455, 943
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	3 cut(s)	117, 399, 822
Eco88I	CYCGRG	1 cut(s)	1141
EcoICRI	GAGCTC	1 cut(s)	556
EcoRI	GAATTC	2 cut(s)	592, 1029
EcoRII	CCWGG	2 cut(s)	600, 984
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	938
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	938
FaeI	CATG	4 cut(s)	295, 412, 689, 1099
FaqI	GGGAC	2 cut(s)	64, 956
FatI	CATG	4 cut(s)	291, 408, 685, 1095
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	206, 246, 624, 1055, 1067
FokI	GGATG	2 cut(s)	493, 1112
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	206, 246, 624, 1055, 1067
FspBI	CTAG	4 cut(s)	144, 482, 612, 1088
GluI	GCNGC	5 cut(s)	206, 246, 624, 1055, 1067
GsaI	CCCAGC	1 cut(s)	1002
GsuI	CTGGAG	2 cut(s)	417, 584
HaeIII	GGCC	2 cut(s)	257, 799
HapII	CCGG	2 cut(s)	519, 1142
Hin1II	CATG	4 cut(s)	295, 412, 689, 1099
HinfI	GANTC	2 cut(s)	240, 934
HpaII	CCGG	2 cut(s)	519, 1142
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	491, 1138
Hpy188I	TCNGA	5 cut(s)	325, 418, 448, 833, 1015
Hpy188III	TCNNGA	4 cut(s)	393, 482, 492, 1088
Hpy8I	GTNNAC	2 cut(s)	491, 1138
HpyAV	CCTTC	2 cut(s)	574, 797
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	3 cut(s)	165, 462, 952
HpyCH4V	TGCA	7 cut(s)	234, 335, 551, 677, 689, 929, 1057
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 410, 1051, 1063
HpyF3I	CTNAG	2 cut(s)	383, 977
HpySE526I	ACGT	3 cut(s)	165, 462, 952
Hsp92II	CATG	4 cut(s)	295, 412, 689, 1099
Kzo9I	GATC	4 cut(s)	196, 475, 559, 700
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	991
Lsp1109I	GCAGC	5 cut(s)	192, 232, 610, 1041, 1053
LweI	GCATC	5 cut(s)	14, 322, 515, 769, 1066
MaeI	CTAG	4 cut(s)	144, 482, 612, 1088
MaeII	ACGT	3 cut(s)	165, 462, 952
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	198, 477, 561, 702
MboI	GATC	4 cut(s)	196, 475, 559, 700
MboII	GAAGA	6 cut(s)	40, 43, 123, 202, 431, 434
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	5 cut(s)	271, 388, 592, 744, 1029
MmeI	TCCRAC	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	1033
MseI	TTAA	2 cut(s)	740, 809
MspI	CCGG	2 cut(s)	519, 1142
MspR9I	CCNGG	4 cut(s)	602, 986, 1142, 1143
MvaI	CCWGG	2 cut(s)	602, 986
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	4 cut(s)	254, 410, 1051, 1063
NciI	CCSGG	2 cut(s)	1142, 1143
NdeII	GATC	4 cut(s)	196, 475, 559, 700
NlaIII	CATG	4 cut(s)	295, 412, 689, 1099
NlaIV	GGNNCC	1 cut(s)	944
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	689
NspV	TTCGAA	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	1033
PfeI	GAWTC	2 cut(s)	240, 934
Pfl23II	CGTACG	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	827
PkrI	GCNGC	5 cut(s)	207, 247, 625, 1056, 1068
Ppu21I	YACGTR	2 cut(s)	166, 463
PsiI	TTATAA	2 cut(s)	267, 540
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	600, 984
PspFI	CCCAGC	1 cut(s)	998
PspGI	CCWGG	2 cut(s)	600, 984
PspLI	CGTACG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	944
PspPI	GGNCC	2 cut(s)	455, 943
PsuI	RGATCY	1 cut(s)	475
PsyI	GACNNNGTC	1 cut(s)	827
RsaI	GTAC	5 cut(s)	148, 164, 461, 664, 1125
RsaNI	GTAC	5 cut(s)	147, 163, 460, 663, 1124
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	740, 809
SatI	GCNGC	5 cut(s)	206, 246, 624, 1055, 1067
Sau3AI	GATC	4 cut(s)	196, 475, 559, 700
Sau96I	GGNCC	2 cut(s)	455, 943
ScaI	AGTACT	1 cut(s)	148
ScrFI	CCNGG	4 cut(s)	602, 986, 1142, 1143
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	5 cut(s)	14, 322, 515, 769, 1066
SfuI	TTCGAA	1 cut(s)	359
SinI	GGWCC	2 cut(s)	455, 943
SmaI	CCCGGG	1 cut(s)	1143
SnaBI	TACGTA	1 cut(s)	463
Sse9I	AATT	5 cut(s)	271, 388, 592, 744, 1029
SsiI	CCGC	3 cut(s)	82, 122, 756
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	4 cut(s)	144, 482, 612, 1088
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	4 cut(s)	600, 984, 1140, 1141
StyI	CCWWGG	1 cut(s)	938
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	3 cut(s)	168, 465, 955
TaqI	TCGA	5 cut(s)	348, 359, 558, 784, 904
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	5 cut(s)	271, 388, 592, 744, 1029
TatI	WGTACW	2 cut(s)	146, 1123
TfiI	GAWTC	2 cut(s)	240, 934
Tru1I	TTAA	2 cut(s)	740, 809
Tru9I	TTAA	2 cut(s)	740, 809
TscAI	CASTG	2 cut(s)	310, 832
TseI	GCWGC	5 cut(s)	205, 245, 623, 1054, 1066
TspDTI	ATGAA	7 cut(s)	366, 378, 633, 709, 890, 947, 978
TspGWI	ACGGA	1 cut(s)	447
TspMI	CCCGGG	1 cut(s)	1141
TspRI	CASTG	2 cut(s)	310, 832
Tth111I	GACNNNGTC	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	455, 943
XapI	RAATTY	3 cut(s)	388, 592, 1029
XbaI	TCTAGA	2 cut(s)	481, 1087
XceI	RCATGY	1 cut(s)	689
XmaI	CCCGGG	1 cut(s)	1141
XmnI	GAANNNNTTC	1 cut(s)	1033
XspI	CTAG	4 cut(s)	144, 482, 612, 1088
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.