pycom05g03990

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4595612 .. 4598267
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03990.1

Sequence Viewer

Length: 1248 bp
ATGCCATTACCCACCACAATCATAACCATAACACCACCGTCCACCTCCTGCCCTGCTCCAATTTTCCCACCAAATCGCCCTCATTTCCCGCCCAGAAATCTGTTTACTACAAAAACCATCCTCCACAACCACAGACCAGCAATGGCAAATCTTTCTGGGTTCGGTTTCAGTATTGGGTCCCGACTGGTGGCTTCTTCCGGTACTAGTGGCAGTGTTGCCGATGATGAGGTGCGCACCCTGATTGAGTATGCGGCCGGCGAGGGAGGTGCCACTGTGGGAGATGATCTGGTGCTTCTGTTCCACCAATTACAGTACGCCTGCAAGAGAATAGCAGCTCTTGTAGCTTCTCCTTTCAATTCCAGCCTTGGGAAGCACAAGGGTCTCTCTGGCGGCGGCGCTTCGGCTGCTGGGTCAGGCCGGGATGCACCGAAGCCTCTTGATATCGTTTCGAATGAAATCATCTTGTCCTCTCTTAAAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCAATTTGGATAACCGATGATGGCCCATTTGTGGTGGTAACGGATCCTCTAGATGGTTCTCGAAATATTGATGCGTCCATTCCCACTGGAACCATTTTTGGGATTTATAAACGCCTTCCGGAGCTGGATCATCTACCAAAGGAGGAGAAGGCTTTGCTGAATTCACTCCAGAAGGGAACTAATCTTGTTGCTGCCGGCTATGTTCTTTATTCATCTGCCACAATATTCTGCACCAGCTTTGGTTCAGGAACACATGCATTCACGCTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGCTTAAAAATTCCTCCTCGAGGGCAAATATATTCTGTAAATGATGCTCGATATTTTGACTGGCCCAATGGATTAAGGCAATACATAGACACTGTGAGACAAGGGAAAGGCAGATACCCCAAGAAGTACTCTGCGCGTTATATCTGTTCTCTGGTAGCAGATTTTCATCGAACTCTACTGTATGGTGGAGTGACAATGAATCCAAGGGACCACCTTCGTCTGGTTTACGAAGCCAACCCTCTTAGTTTTCTGGTGGAGCAAGCCGGGGGCAAATGTTCTGATGGTAAAAGTAGAATTCTATCGATTCAGCCAGTCAAGCTGCACCAAAGGCTGCCTCTGTTCCTGGGGAGTTTGGAGGACATGGAAGAGTTAGAGAGTTACGGAGATGTGCAACAGAAAGTGAACCCAGGATACGAGGTTTGA

Protein Analysis

416

Amino Acids

44.92

Weight (kDa)

6.86

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBPase PF00316 94 - 275 2.2e-37 Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C PF18913 279 - 402 7.2e-38 Fructose-1-6-bisphosphatase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64380
fragaria_vesca FvH4_2g11590
malus_domestica MD05G1048200.v1.1
prunus_persica Prupe.8G070500_v2.0.a1
pyrus_communis pycom05g03990
rosa_chinensis RchiOBHm_Chr6g0270781
rosa_laevigata RLG00000013769
rosa_multiflora Rmu_sc0000642.1_g000021
rosa_roxburghii Rroxscaffold_7G00197600
rosa_rugosa Rorug06G0056600
rosa_samantha Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana Rw6G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AbsI CCTCGAGG 1 cut(s) 843
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 961
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 4 cut(s) 89, 251, 390, 393
AclWI GGATC 4 cut(s) 560, 573, 657, 798
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 4 cut(s) 478, 682, 834, 1119
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 3 cut(s) 202, 314, 953
AfiI CCNNNNNNNGG 7 cut(s) 187, 366, 553, 575, 621, 845, 1045
AgsI TTSAA 2 cut(s) 355, 798
AhlI ACTAGT 1 cut(s) 203
AjnI CCWGG 2 cut(s) 1167, 1231
AluBI AGCT 7 cut(s) 335, 344, 494, 646, 759, 828, 1144
AluI AGCT 7 cut(s) 335, 344, 494, 646, 759, 828, 1144
Alw26I GTCTC 2 cut(s) 386, 916
AlwI GGATC 4 cut(s) 560, 573, 657, 798
Ama87I CYCGRG 1 cut(s) 843
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 4 cut(s) 252, 415, 544, 887
ApeKI GCWGC 5 cut(s) 332, 404, 713, 1144, 1156
ApoI RAATTY 4 cut(s) 478, 682, 834, 1119
AspLEI GCGC 3 cut(s) 234, 398, 961
AspS9I GGNCC 4 cut(s) 177, 545, 888, 1033
AsuC2I CCSGG 2 cut(s) 419, 1090
AsuII TTCGAA 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 177, 1033
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 266
BbvI GCAGC 5 cut(s) 344, 391, 700, 1131, 1143
BccI CCATC 4 cut(s) 125, 536, 569, 1100
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 2 cut(s) 1169, 1233
BciVI GTATCC 1 cut(s) 1229
BcnI CCSGG 2 cut(s) 419, 1090
BcoDI GTCTC 2 cut(s) 386, 916
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 2 cut(s) 204, 572
BfoI RGCGCY 1 cut(s) 399
BfuI GTATCC 1 cut(s) 1229
BisI GCNGC 8 cut(s) 252, 333, 391, 394, 405, 714, 1145, 1157
BlsI GCNGC 8 cut(s) 253, 334, 392, 395, 406, 715, 1146, 1158
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 4 cut(s) 419, 1090, 1169, 1233
Bme18I GGWCC 2 cut(s) 177, 1033
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 4 cut(s) 177, 545, 888, 1033
BmiI GGNNCC 6 cut(s) 178, 179, 268, 567, 613, 1034
BmrFI CCNGG 4 cut(s) 419, 1090, 1169, 1233
BmsI GCATC 3 cut(s) 412, 583, 859
BpmI CTGGAG 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 419, 1090
Bsa29I ATCGAT 1 cut(s) 1127
BsaBI GATNNNNATC 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 5 cut(s) 364, 1028, 1089, 1168, 1231
BsaWI WCCGGW 2 cut(s) 197, 640
Bsc4I CCNNNNNNNGG 7 cut(s) 187, 366, 553, 575, 621, 845, 1045
Bse118I RCCGGY 2 cut(s) 254, 716
Bse1I ACTGG 4 cut(s) 189, 613, 890, 1136
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 990
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 2 cut(s) 1169, 1233
BseCI ATCGAT 1 cut(s) 1127
BseDI CCNNGG 5 cut(s) 364, 1028, 1089, 1168, 1231
BseGI GGATG 2 cut(s) 117, 427
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 7 cut(s) 187, 366, 553, 575, 621, 845, 1045
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 4 cut(s) 189, 613, 890, 1136
BseRI GAGGAG 2 cut(s) 680, 831
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 5 cut(s) 344, 391, 700, 1131, 1143
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 2 cut(s) 736, 1130
Bsh1236I CGCG 1 cut(s) 961
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 254, 417, 546, 889
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 1127
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 6 cut(s) 198, 255, 418, 641, 717, 1089
BslFI GGGAC 2 cut(s) 163, 1046
BslI CCNNNNNNNGG 7 cut(s) 187, 366, 553, 575, 621, 845, 1045
BsmAI GTCTC 2 cut(s) 386, 916
BsmFI GGGAC 2 cut(s) 163, 1046
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 4 cut(s) 254, 417, 546, 889
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 843
Bsp119I TTCGAA 1 cut(s) 449
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 4 cut(s) 283, 565, 649, 790
BspACI CCGC 4 cut(s) 89, 251, 390, 393
BspANI GGCC 4 cut(s) 254, 417, 546, 889
BspDI ATCGAT 1 cut(s) 1127
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 1 cut(s) 961
BspLI GGNNCC 6 cut(s) 178, 179, 268, 567, 613, 1034
BspPI GGATC 4 cut(s) 560, 573, 657, 798
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 2 cut(s) 254, 716
BsrI ACTGG 4 cut(s) 189, 613, 890, 1136
BssAI RCCGGY 2 cut(s) 254, 716
BssECI CCNNGG 5 cut(s) 364, 1028, 1089, 1168, 1231
BssMI GATC 4 cut(s) 283, 565, 649, 790
BssT1I CCWWGG 2 cut(s) 364, 1028
Bst2UI CCWGG 2 cut(s) 1169, 1233
Bst4CI ACNGT 5 cut(s) 39, 274, 312, 919, 1005
Bst6I CTCTTC 1 cut(s) 1185
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 256, 319, 718, 1086
BstDEI CTNAG 1 cut(s) 1067
BstENI CCTNNNNNAGG 1 cut(s) 843
BstF5I GGATG 2 cut(s) 117, 427
BstFNI CGCG 1 cut(s) 961
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 234, 398, 961
BstKTI GATC 4 cut(s) 286, 568, 652, 793
BstMAI GTCTC 2 cut(s) 386, 916
BstMBI GATC 4 cut(s) 283, 565, 649, 790
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 5 cut(s) 341, 404, 500, 1141, 1153
BstNI CCWGG 2 cut(s) 1169, 1233
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 4 cut(s) 417, 1088, 1167, 1231
BstUI CGCG 1 cut(s) 961
BstV1I GCAGC 5 cut(s) 344, 391, 700, 1131, 1143
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BstZI CGGCCG 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 1127
BsuI GTATCC 1 cut(s) 1229
BsuRI GGCC 4 cut(s) 254, 417, 546, 889
BsuTUI ATCGAT 1 cut(s) 1127
BtsCI GGATG 2 cut(s) 117, 427
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 4 cut(s) 217, 270, 606, 915
Cac8I GCNNGC 4 cut(s) 256, 319, 718, 1086
CfoI GCGC 3 cut(s) 234, 398, 961
Cfr10I RCCGGY 2 cut(s) 254, 716
Cfr13I GGNCC 4 cut(s) 177, 545, 888, 1033
ClaI ATCGAT 1 cut(s) 1127
CseI GACGC 1 cut(s) 585
Csp6I GTAC 3 cut(s) 201, 313, 952
CviAII CATG 3 cut(s) 499, 776, 1186
CviQI GTAC 3 cut(s) 201, 313, 952
DdeI CTNAG 1 cut(s) 1067
DpnI GATC 4 cut(s) 285, 567, 651, 792
DpnII GATC 4 cut(s) 283, 565, 649, 790
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 1185
EarI CTCTTC 1 cut(s) 1185
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 364, 1028
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 177, 1033
Eco52I CGGCCG 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 843
EcoNI CCTNNNNNAGG 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 177
EcoRI GAATTC 2 cut(s) 682, 1119
EcoRII CCWGG 2 cut(s) 1167, 1231
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 364, 1028
EcoT22I ATGCAT 1 cut(s) 781
ErhI CCWWGG 2 cut(s) 364, 1028
FaeI CATG 3 cut(s) 502, 779, 1189
FaqI GGGAC 2 cut(s) 163, 1046
FatI CATG 3 cut(s) 498, 775, 1185
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 8 cut(s) 252, 333, 391, 394, 405, 714, 1145, 1157
FokI GGATG 2 cut(s) 104, 434
Fsp4HI GCNGC 8 cut(s) 252, 333, 391, 394, 405, 714, 1145, 1157
FspAI RTGCGCAY 1 cut(s) 233
FspBI CTAG 2 cut(s) 204, 572
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 3 cut(s) 233, 397, 960
GluI GCNGC 8 cut(s) 252, 333, 391, 394, 405, 714, 1145, 1157
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 4 cut(s) 254, 417, 546, 889
HapII CCGG 6 cut(s) 198, 255, 418, 641, 717, 1089
HgaI GACGC 1 cut(s) 585
HhaI GCGC 3 cut(s) 234, 398, 961
Hin1II CATG 3 cut(s) 502, 779, 1189
Hin6I GCGC 3 cut(s) 232, 396, 959
HinP1I GCGC 3 cut(s) 232, 396, 959
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 2 cut(s) 1024, 1129
HpaII CCGG 6 cut(s) 198, 255, 418, 641, 717, 1089
Hpy166II GTNNAC 4 cut(s) 42, 105, 1051, 1228
Hpy188I TCNGA 2 cut(s) 508, 1105
Hpy188III TCNNGA 8 cut(s) 180, 437, 483, 572, 582, 641, 691, 768
Hpy8I GTNNAC 4 cut(s) 42, 105, 1051, 1228
HpyAV CCTTC 4 cut(s) 647, 664, 688, 1049
HpyCH4III ACNGT 5 cut(s) 39, 274, 312, 919, 1005
HpyCH4V TGCA 6 cut(s) 321, 425, 753, 779, 1147, 1216
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 404, 500, 1141, 1153
HpyF3I CTNAG 1 cut(s) 1067
Hsp92II CATG 3 cut(s) 502, 779, 1189
HspAI GCGC 3 cut(s) 232, 396, 959
KflI GGGWCCC 1 cut(s) 177
Kpn2I TCCGGA 1 cut(s) 640
KroI GCCGGC 2 cut(s) 254, 716
KroNI GCCGGC 2 cut(s) 256, 718
Kzo9I GATC 4 cut(s) 283, 565, 649, 790
LmnI GCTCC 3 cut(s) 61, 643, 1081
Lsp1109I GCAGC 5 cut(s) 344, 391, 700, 1131, 1143
LweI GCATC 3 cut(s) 412, 583, 859
MaeI CTAG 2 cut(s) 204, 572
MaeIII GTNAC 3 cut(s) 559, 1015, 1202
MalI GATC 4 cut(s) 285, 567, 651, 792
MboI GATC 4 cut(s) 283, 565, 649, 790
MboII GAAGA 4 cut(s) 186, 521, 524, 1202
MflI RGATCY 1 cut(s) 565
MluCI AATT 8 cut(s) 60, 305, 355, 478, 525, 682, 834, 1119
Mph1103I ATGCAT 1 cut(s) 781
MroI TCCGGA 1 cut(s) 640
MroNI GCCGGC 2 cut(s) 254, 716
MseI TTAA 3 cut(s) 474, 830, 899
MspI CCGG 6 cut(s) 198, 255, 418, 641, 717, 1089
MspR9I CCNGG 4 cut(s) 419, 1090, 1169, 1233
Mva1269I GAATGC 1 cut(s) 779
MvaI CCWGG 2 cut(s) 1169, 1233
MvnI CGCG 1 cut(s) 961
MwoI GCNNNNNNNGC 5 cut(s) 341, 404, 500, 1141, 1153
NaeI GCCGGC 2 cut(s) 256, 718
NciI CCSGG 2 cut(s) 419, 1090
NdeII GATC 4 cut(s) 283, 565, 649, 790
NgoMIV GCCGGC 2 cut(s) 254, 716
NlaIII CATG 3 cut(s) 502, 779, 1189
NlaIV GGNNCC 6 cut(s) 178, 179, 268, 567, 613, 1034
NmuCI GTSAC 1 cut(s) 1015
NsbI TGCGCA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 779
NspV TTCGAA 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 843
PctI GAATGC 1 cut(s) 779
PdiI GCCGGC 2 cut(s) 256, 718
PfeI GAWTC 2 cut(s) 1024, 1129
PkrI GCNGC 8 cut(s) 253, 334, 392, 395, 406, 715, 1146, 1158
PpuMI RGGWCCY 1 cut(s) 177
PsiI TTATAA 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 1167, 1231
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 1167, 1231
PspN4I GGNNCC 6 cut(s) 178, 179, 268, 567, 613, 1034
PspPI GGNCC 4 cut(s) 177, 545, 888, 1033
PspPPI RGGWCCY 1 cut(s) 177
PspXI VCTCGAGB 1 cut(s) 843
PsrI GAACNNNNNNTAC 1 cut(s) 1220
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 3 cut(s) 202, 314, 953
RsaNI GTAC 3 cut(s) 201, 313, 952
SaqAI TTAA 3 cut(s) 474, 830, 899
SatI GCNGC 8 cut(s) 252, 333, 391, 394, 405, 714, 1145, 1157
Sau3AI GATC 4 cut(s) 283, 565, 649, 790
Sau96I GGNCC 4 cut(s) 177, 545, 888, 1033
ScaI AGTACT 1 cut(s) 953
ScrFI CCNGG 4 cut(s) 419, 1090, 1169, 1233
SfaNI GCATC 3 cut(s) 412, 583, 859
Sfr274I CTCGAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 2 cut(s) 177, 1033
SlaI CTCGAG 1 cut(s) 843
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SpeI ACTAGT 1 cut(s) 203
Sse9I AATT 8 cut(s) 60, 305, 355, 478, 525, 682, 834, 1119
SsiI CCGC 4 cut(s) 89, 251, 390, 393
SspI AATATT 2 cut(s) 589, 747
SspMI CTAG 2 cut(s) 204, 572
StyD4I CCNGG 4 cut(s) 417, 1088, 1167, 1231
StyI CCWWGG 2 cut(s) 364, 1028
TaaI ACNGT 5 cut(s) 39, 274, 312, 919, 1005
TaqI TCGA 6 cut(s) 449, 583, 844, 874, 994, 1127
TasI AATT 8 cut(s) 60, 305, 355, 478, 525, 682, 834, 1119
TatI WGTACW 1 cut(s) 951
TauI GCSGC 3 cut(s) 254, 393, 396
TfiI GAWTC 2 cut(s) 1024, 1129
Tru1I TTAA 3 cut(s) 474, 830, 899
Tru9I TTAA 3 cut(s) 474, 830, 899
TscAI CASTG 4 cut(s) 217, 277, 613, 922
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 5 cut(s) 332, 404, 713, 1144, 1156
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 5 cut(s) 468, 723, 799, 980, 1037
TspGWI ACGGA 2 cut(s) 578, 1221
TspRI CASTG 4 cut(s) 217, 277, 613, 922
VpaK11BI GGWCC 2 cut(s) 177, 1033
XagI CCTNNNNNAGG 1 cut(s) 843
XapI RAATTY 4 cut(s) 478, 682, 834, 1119
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 843
XspI CTAG 2 cut(s) 204, 572
ZrmI AGTACT 1 cut(s) 953
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.