Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016570

Physical Location & Seq

Genomic Coordinates Reverse (-)

25945626 .. 25949833

Gene Structure 4208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG167600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCATCATCCACGAGTAGGGGTATAGGCTTATGCCCATCTCCAATCTTCTTCCCACCAAAGCATTATTCCCACTTGTCCCGCCAAACAATCAGAATGGCAACTCCTCCTCCTTATGCGGTGGCTTCTTCAGGCAAAGCTAGTACTACTCTTACAGAGTATGTGGGTGATGGAGGTGTCGGTGTGGGAGATGATCTTGTGCTGCTCTTCCATCACATAGAGTATGCCTGCAAGAGAATCGCTGCTCTTGTGGCCTCTCCTTATAATAATTCAAGCCTTGCCAAACCCATGTCTCTGCCCACTGCTACTGGGTCTGGGTCTGGGTCTGGGTCTGACCGAGATGCACCCAAGCCCCTCGACATTGTTTCGAATGAAATCATCTTTTCGTCTCTTAGAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCAGTTTGGATATCTGATGATGGTCCGTACGTAGTAGTAACAGATCCTCTAGACGGTTCACGTAACATTGAAGCATCAATTCCCACCGGAACAATCTTTGGGATTTATAAACGACTTGCAGAGCTGGATCATCTACCAAAGGAGGAGAAGGCTTTGCTGAATTCACTTCAGGTTGGAACTAGGCTTGTAGCTGCTGGCTATGTTCTTTATTCATCAGCCACAATATTCTGTACCAGCTTTGGTGCAGGAACACATGCATTTACACTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGCTTAACAATTCCTCCTCGCGGACAAATATATTCTGTAAATGATGCTCGATACTTTGACTGGCCTGAAGGGTTAAGGAAGTATATAGACACTGTGAGACAAGGGAAAGGCAGATACCCCAAGAAGTATTCTGCCCGTTATATCTGTTCTTTGGTAGCTGATTTTCATCGAACTCTGCTGTATGGTGGAGTTGCAATGAATCCAAGGGACCATCTACGTCTTGTTTATGAAGCTAACCCTCTTAGCTTCCTAGTGGAGCAAGCTGGGGGTAAGGGTTCTGATGGTAAAAATAGAATTCTTTCAATACAGCCAATCAAGCTGCATCAAAGGCTGCCCCTATTCTTGGGAAGTCTAGAGGACATGGATGAGCTAGAGAGTTATGGAGATGTACAGCAGAAAGTGAACCCGGGATATGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

388

Amino Acids

42.15

Weight (kDa)

6.42

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	65 - 248	5.4e-36	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	252 - 375	2e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64380
fragaria_vesca	FvH4_2g11590
malus_domestica	MD05G1048200.v1.1
prunus_persica	Prupe.8G070500_v2.0.a1
pyrus_communis	pycom05g03990
rosa_chinensis	RchiOBHm_Chr6g0270781
rosa_laevigata	RLG00000013769
rosa_multiflora	Rmu_sc0000642.1_g000021
rosa_roxburghii	Rroxscaffold_7G00197600
rosa_rugosa	Rorug06G0056600
rosa_samantha	Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana	Rw6G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 549
AccII	CGCG	1 cut(s)	765
AciI	CCGC	3 cut(s)	82, 119, 765
AclWI	GGATC	3 cut(s)	479, 576, 717
AcsI	RAATTY	3 cut(s)	397, 601, 1038
AcuI	CTGAAG	4 cut(s)	114, 408, 593, 831
AfaI	GTAC	4 cut(s)	145, 470, 673, 1134
AfiI	CCNNNNNNNGG	4 cut(s)	18, 494, 764, 1087
AgsI	TTSAA	4 cut(s)	273, 512, 717, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
Alw26I	GTCTC	3 cut(s)	297, 393, 835
AlwI	GGATC	3 cut(s)	479, 576, 717
Ama87I	CYCGRG	1 cut(s)	1150
AoxI	GGCC	2 cut(s)	252, 806
ApeKI	GCWGC	5 cut(s)	202, 242, 632, 1063, 1075
ApoI	RAATTY	3 cut(s)	397, 601, 1038
Asp700I	GAANNNNTTC	1 cut(s)	1042
AspS9I	GGNCC	2 cut(s)	464, 952
AsuC2I	CCSGG	2 cut(s)	1151, 1152
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	1150
AvaII	GGWCC	2 cut(s)	464, 952
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BauI	CACGAG	1 cut(s)	13
BbvI	GCAGC	5 cut(s)	189, 229, 619, 1050, 1062
BccI	CCATC	6 cut(s)	46, 164, 219, 455, 963, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BcnI	CCSGG	2 cut(s)	1151, 1152
BcoDI	GTCTC	3 cut(s)	297, 393, 835
BfaI	CTAG	6 cut(s)	141, 491, 621, 995, 1097, 1115
BisI	GCNGC	5 cut(s)	203, 243, 633, 1064, 1076
BlsI	GCNGC	5 cut(s)	204, 244, 634, 1065, 1077
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	1151, 1152
Bme18I	GGWCC	2 cut(s)	464, 952
BmeT110I	CYCGRG	1 cut(s)	1150
BmgT120I	GGNCC	2 cut(s)	464, 952
BmiI	GGNNCC	1 cut(s)	953
BmrFI	CCNGG	2 cut(s)	1151, 1152
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	5 cut(s)	14, 331, 524, 778, 1075
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	1151, 1152
BsaAI	YACGTR	2 cut(s)	472, 503
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	2 cut(s)	947, 1150
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 742, 772
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 494, 764, 1087
Bse1I	ACTGG	4 cut(s)	313, 443, 711, 809
Bse3DI	GCAATG	1 cut(s)	945
Bse8I	GATNNNNATC	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	947, 1150
BseGI	GGATG	2 cut(s)	8, 1114
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	4 cut(s)	18, 494, 764, 1087
BseMI	GCAATG	1 cut(s)	945
BseNI	ACTGG	4 cut(s)	313, 443, 711, 809
BseRI	GAGGAG	4 cut(s)	96, 99, 599, 750
BseXI	GCAGC	5 cut(s)	189, 229, 619, 1050, 1062
BseYI	CCCAGC	1 cut(s)	1007
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	765
BshFI	GGCC	2 cut(s)	254, 808
BsiHKCI	CYCGRG	1 cut(s)	1150
BsiSI	CCGG	2 cut(s)	528, 1151
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	64, 965
BslI	CCNNNNNNNGG	4 cut(s)	18, 494, 764, 1087
BsmAI	GTCTC	3 cut(s)	297, 393, 835
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	64, 965
BsnI	GGCC	2 cut(s)	254, 808
BsoBI	CYCGRG	1 cut(s)	1150
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	1132
Bsp143I	GATC	4 cut(s)	193, 484, 568, 709
BspACI	CCGC	3 cut(s)	82, 119, 765
BspANI	GGCC	2 cut(s)	254, 808
BspFNI	CGCG	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	953
BspPI	GGATC	3 cut(s)	479, 576, 717
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	945
BsrGI	TGTACA	1 cut(s)	1132
BsrI	ACTGG	4 cut(s)	313, 443, 711, 809
BssECI	CCNNGG	2 cut(s)	947, 1150
BssMI	GATC	4 cut(s)	193, 484, 568, 709
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	947
Bst2BI	CACGAG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	497, 838
Bst6I	CTCTTC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	1132
BstBAI	YACGTR	2 cut(s)	472, 503
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	229, 637, 1005
BstDEI	CTNAG	2 cut(s)	392, 986
BstF5I	GGATG	2 cut(s)	8, 1114
BstFNI	CGCG	1 cut(s)	765
BstKTI	GATC	4 cut(s)	196, 487, 571, 712
BstMAI	GTCTC	3 cut(s)	297, 393, 835
BstMBI	GATC	4 cut(s)	193, 484, 568, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 419, 1060, 1072
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	1149, 1150
BstSNI	TACGTA	1 cut(s)	472
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	5 cut(s)	189, 229, 619, 1050, 1062
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	254, 808
BtsCI	GGATG	2 cut(s)	8, 1114
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	300, 704, 834
Cac8I	GCNNGC	3 cut(s)	229, 637, 1005
Cfr13I	GGNCC	2 cut(s)	464, 952
Cfr9I	CCCGGG	1 cut(s)	1150
Csp6I	GTAC	4 cut(s)	144, 469, 672, 1133
CviAII	CATG	4 cut(s)	289, 418, 695, 1105
CviQI	GTAC	4 cut(s)	144, 469, 672, 1133
DdeI	CTNAG	2 cut(s)	392, 986
DpnI	GATC	4 cut(s)	195, 486, 570, 711
DpnII	GATC	4 cut(s)	193, 484, 568, 709
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco105I	TACGTA	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	947
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	464, 952
Eco57I	CTGAAG	4 cut(s)	114, 408, 593, 831
Eco88I	CYCGRG	1 cut(s)	1150
EcoRI	GAATTC	2 cut(s)	601, 1038
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	947
EcoT22I	ATGCAT	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	947
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	4 cut(s)	292, 421, 698, 1108
FaqI	GGGAC	2 cut(s)	64, 965
FatI	CATG	4 cut(s)	288, 417, 694, 1104
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	203, 243, 633, 1064, 1076
FokI	GGATG	1 cut(s)	1121
Fsp4HI	GCNGC	5 cut(s)	203, 243, 633, 1064, 1076
FspBI	CTAG	6 cut(s)	141, 491, 621, 995, 1097, 1115
GluI	GCNGC	5 cut(s)	203, 243, 633, 1064, 1076
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	254, 808
HapII	CCGG	2 cut(s)	528, 1151
Hin1II	CATG	4 cut(s)	292, 421, 698, 1108
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	2 cut(s)	237, 943
HpaII	CCGG	2 cut(s)	528, 1151
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	500, 1147
Hpy188I	TCNGA	5 cut(s)	95, 334, 427, 457, 1024
Hpy188III	TCNNGA	3 cut(s)	402, 491, 1097
Hpy8I	GTNNAC	2 cut(s)	500, 1147
HpyAV	CCTTC	2 cut(s)	583, 806
HpyCH4III	ACNGT	2 cut(s)	497, 838
HpyCH4IV	ACGT	3 cut(s)	471, 502, 961
HpyCH4V	TGCA	7 cut(s)	231, 344, 560, 686, 698, 938, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 419, 1060, 1072
HpyF3I	CTNAG	2 cut(s)	392, 986
HpySE526I	ACGT	3 cut(s)	471, 502, 961
Hsp92II	CATG	4 cut(s)	292, 421, 698, 1108
Kzo9I	GATC	4 cut(s)	193, 484, 568, 709
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	5 cut(s)	189, 229, 619, 1050, 1062
LweI	GCATC	5 cut(s)	14, 331, 524, 778, 1075
MaeI	CTAG	6 cut(s)	141, 491, 621, 995, 1097, 1115
MaeII	ACGT	3 cut(s)	471, 502, 961
MaeIII	GTNAC	2 cut(s)	478, 503
MalI	GATC	4 cut(s)	195, 486, 570, 711
MboI	GATC	4 cut(s)	193, 484, 568, 709
MboII	GAAGA	6 cut(s)	40, 43, 120, 199, 440, 443
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	6 cut(s)	268, 397, 519, 601, 753, 1038
MmeI	TCCRAC	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	1042
MseI	TTAA	2 cut(s)	749, 818
MspI	CCGG	2 cut(s)	528, 1151
MspR9I	CCNGG	2 cut(s)	1151, 1152
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	4 cut(s)	251, 419, 1060, 1072
NciI	CCSGG	2 cut(s)	1151, 1152
NdeII	GATC	4 cut(s)	193, 484, 568, 709
NlaIII	CATG	4 cut(s)	292, 421, 698, 1108
NlaIV	GGNNCC	1 cut(s)	953
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	1042
PfeI	GAWTC	2 cut(s)	237, 943
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	204, 244, 634, 1065, 1077
Ppu21I	YACGTR	2 cut(s)	472, 503
PsiI	TTATAA	2 cut(s)	264, 549
PspFI	CCCAGC	1 cut(s)	1007
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	953
PspPI	GGNCC	2 cut(s)	464, 952
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	4 cut(s)	145, 470, 673, 1134
RsaNI	GTAC	4 cut(s)	144, 469, 672, 1133
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	749, 818
SatI	GCNGC	5 cut(s)	203, 243, 633, 1064, 1076
Sau3AI	GATC	4 cut(s)	193, 484, 568, 709
Sau96I	GGNCC	2 cut(s)	464, 952
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	1151, 1152
SfaNI	GCATC	5 cut(s)	14, 331, 524, 778, 1075
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	2 cut(s)	464, 952
SmaI	CCCGGG	1 cut(s)	1152
SnaBI	TACGTA	1 cut(s)	472
Sse9I	AATT	6 cut(s)	268, 397, 519, 601, 753, 1038
SsiI	CCGC	3 cut(s)	82, 119, 765
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	6 cut(s)	141, 491, 621, 995, 1097, 1115
StyD4I	CCNGG	2 cut(s)	1149, 1150
StyI	CCWWGG	1 cut(s)	947
TaaI	ACNGT	2 cut(s)	497, 838
TaiI	ACGT	3 cut(s)	474, 505, 964
TaqI	TCGA	4 cut(s)	357, 368, 793, 913
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	6 cut(s)	268, 397, 519, 601, 753, 1038
TatI	WGTACW	2 cut(s)	143, 1132
TfiI	GAWTC	2 cut(s)	237, 943
Tru1I	TTAA	2 cut(s)	749, 818
Tru9I	TTAA	2 cut(s)	749, 818
TscAI	CASTG	3 cut(s)	307, 711, 841
TseI	GCWGC	5 cut(s)	202, 242, 632, 1063, 1075
TspDTI	ATGAA	6 cut(s)	387, 642, 718, 899, 956, 987
TspGWI	ACGGA	1 cut(s)	456
TspMI	CCCGGG	1 cut(s)	1150
TspRI	CASTG	3 cut(s)	307, 711, 841
VpaK11BI	GGWCC	2 cut(s)	464, 952
XapI	RAATTY	3 cut(s)	397, 601, 1038
XbaI	TCTAGA	2 cut(s)	490, 1096
XceI	RCATGY	1 cut(s)	698
XmaI	CCCGGG	1 cut(s)	1150
XmnI	GAANNNNTTC	1 cut(s)	1042
XspI	CTAG	6 cut(s)	141, 491, 621, 995, 1097, 1115
ZrmI	AGTACT	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.