Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016570

Physical Location & Seq

Genomic Coordinates Forward (+)

40592863 .. 40595902

Gene Structure 3040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAACTCCTCCTCCTTATGCGGTGGCTTCTTCAGGCAAAGCTAGTACTACTCTTACAGAGTATGTGGGTGATGGAGGTGTCGGTGTGGGAGATGATCTTGTGCTGCTCTTCCATCACATAGAGTATGCCTGCAAGAGAATCGCTGCTCTTGTGGCCTCTCCTTATAATAATTCAAGCCTTGCCAAACCCATGACTCTGCCCACTGCTACTGGGTCTGCGTCTGACCGAGATGCACCCAAGCCCCTCGACATTGTTTCGAATGAAATCATCTTTTCATCTCTTAGAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCAGTTTGGATATCTGATGATGGTCCGTACGTAGTGGTAACAGATCCTTTAGACGGTTCACGAAACATTGAAGCATCCATACCCACTGGAACAATCTTTGGGATTTATAAACGACTTGCAGAGCTCGATCATCTACCAAAGGAGGAGAAGGCTTTGCTGAATTCACTCCAGGTTGGAACTAGGCTTGTAGCTGCTGGCTATGTTCTTTATTCATCAGCCACAATATTCTGTACCAGCTTTGGTGCAGGAACACATGCATTTACGCTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGTTTAACAATTCCTCCTCGCGGACAAATATATTCTGTAAATGATGCTCGATACTTTGACTGGCCTGAAGGGTTAAGGAAGTATATAGACACTGTGAGACAAGGAAAAGGCAGATACCCCAAGAAGTATTCTGCCCGTTATATCTGTTCTTTGGTAGCTGATTTTCATCGAACTCTGCTGTATGGTGGAGTTGCAATGAATCCAAGGGACCATCTACGTCTTGTTTATGAAGCTAACCCTCTTAGCTTCCTAGTGGAGCAAGCTGGGGGTAAGGGTTCTGATGGTAAAAATAGAATTCTTTCAATACAGCCAATCAAGCTGCATCAAAGGCTGCCCCTATTTCTGGGAAGTCTAGAGGACATGGATGAGTTAGAGAGTTATGGAGATGTACAGCAGAAAGTGAACCCGGGATATGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

353

Amino Acids

38.33

Weight (kDa)

5.73

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	32 - 212	6.2e-37	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	216 - 339	1.6e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64380
fragaria_vesca	FvH4_2g11590
malus_domestica	MD05G1048200.v1.1
prunus_persica	Prupe.8G070500_v2.0.a1
pyrus_communis	pycom05g03990
rosa_chinensis	RchiOBHm_Chr6g0270781
rosa_laevigata	RLG00000013769
rosa_multiflora	Rmu_sc0000642.1_g000021
rosa_roxburghii	Rroxscaffold_7G00197600
rosa_rugosa	Rorug06G0056600
rosa_samantha	Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana	Rw6G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	168, 441
AccII	CGCG	1 cut(s)	657
AciI	CCGC	2 cut(s)	23, 657
AclWI	GGATC	2 cut(s)	371, 609
AcsI	RAATTY	3 cut(s)	289, 493, 930
AcuI	CTGAAG	3 cut(s)	18, 300, 723
AfaI	GTAC	4 cut(s)	49, 362, 565, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	386, 656, 979
AgsI	TTSAA	4 cut(s)	177, 404, 609, 939
AjnI	CCWGG	1 cut(s)	501
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	2 cut(s)	371, 609
Ama87I	CYCGRG	1 cut(s)	1042
AoxI	GGCC	2 cut(s)	156, 698
ApeKI	GCWGC	5 cut(s)	106, 146, 524, 955, 967
ApoI	RAATTY	3 cut(s)	289, 493, 930
Asp700I	GAANNNNTTC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	356, 844
AsuC2I	CCSGG	2 cut(s)	1043, 1044
AsuHPI	GGTGA	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	356, 844
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanII	GRGCYC	1 cut(s)	459
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	5 cut(s)	93, 133, 511, 942, 954
BccI	CCATC	5 cut(s)	68, 123, 347, 855, 911
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	1043, 1044
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	4 cut(s)	45, 513, 887, 989
BisI	GCNGC	5 cut(s)	107, 147, 525, 956, 968
BlsI	GCNGC	5 cut(s)	108, 148, 526, 957, 969
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	503, 1043, 1044
Bme18I	GGWCC	2 cut(s)	356, 844
BmeT110I	CYCGRG	1 cut(s)	1042
BmgT120I	GGNCC	2 cut(s)	356, 844
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	3 cut(s)	503, 1043, 1044
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	4 cut(s)	223, 416, 670, 967
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	318, 485
Bpu14I	TTCGAA	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	1043, 1044
BsaAI	YACGTR	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	839, 1042
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 656, 979
Bse1I	ACTGG	4 cut(s)	217, 335, 424, 701
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	839, 1042
BseGI	GGATG	2 cut(s)	407, 1006
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	386, 656, 979
BseMI	GCAATG	1 cut(s)	837
BseNI	ACTGG	4 cut(s)	217, 335, 424, 701
BseRI	GAGGAG	2 cut(s)	491, 642
BseXI	GCAGC	5 cut(s)	93, 133, 511, 942, 954
BseYI	CCCAGC	1 cut(s)	899
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	158, 700
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	1 cut(s)	1043
BsiWI	CGTACG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	3 cut(s)	386, 656, 979
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	2 cut(s)	158, 700
BsoBI	CYCGRG	1 cut(s)	1042
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	4 cut(s)	97, 376, 460, 601
BspACI	CCGC	2 cut(s)	23, 657
BspANI	GGCC	2 cut(s)	158, 700
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	371, 609
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	837
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	4 cut(s)	217, 335, 424, 701
BssECI	CCNNGG	2 cut(s)	839, 1042
BssMI	GATC	4 cut(s)	97, 376, 460, 601
BssT1I	CCWWGG	1 cut(s)	839
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	389, 730
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	133, 529, 897
BstDEI	CTNAG	2 cut(s)	284, 878
BstF5I	GGATG	2 cut(s)	407, 1006
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	4 cut(s)	100, 379, 463, 604
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	4 cut(s)	97, 376, 460, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 311, 952, 964
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	3 cut(s)	501, 1041, 1042
BstSNI	TACGTA	1 cut(s)	364
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	5 cut(s)	93, 133, 511, 942, 954
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	158, 700
BtsCI	GGATG	2 cut(s)	407, 1006
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 417, 726
Cac8I	GCNNGC	3 cut(s)	133, 529, 897
Cfr13I	GGNCC	2 cut(s)	356, 844
Cfr9I	CCCGGG	1 cut(s)	1042
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	4 cut(s)	48, 361, 564, 1025
CviAII	CATG	4 cut(s)	193, 310, 587, 997
CviQI	GTAC	4 cut(s)	48, 361, 564, 1025
DdeI	CTNAG	2 cut(s)	284, 878
DpnI	GATC	4 cut(s)	99, 378, 462, 603
DpnII	GATC	4 cut(s)	97, 376, 460, 601
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	457
Eco105I	TACGTA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	356, 844
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	18, 300, 723
Eco88I	CYCGRG	1 cut(s)	1042
EcoICRI	GAGCTC	1 cut(s)	457
EcoRI	GAATTC	2 cut(s)	493, 930
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	839
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	839
FaeI	CATG	4 cut(s)	196, 313, 590, 1000
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	4 cut(s)	192, 309, 586, 996
Fnu4HI	GCNGC	5 cut(s)	107, 147, 525, 956, 968
FokI	GGATG	2 cut(s)	394, 1013
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	5 cut(s)	107, 147, 525, 956, 968
FspBI	CTAG	4 cut(s)	45, 513, 887, 989
GluI	GCNGC	5 cut(s)	107, 147, 525, 956, 968
GsaI	CCCAGC	1 cut(s)	903
GsuI	CTGGAG	2 cut(s)	318, 485
HaeIII	GGCC	2 cut(s)	158, 700
HapII	CCGG	1 cut(s)	1043
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	196, 313, 590, 1000
HinfI	GANTC	3 cut(s)	141, 196, 835
HpaII	CCGG	1 cut(s)	1043
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	392, 1039
Hpy188I	TCNGA	4 cut(s)	226, 319, 349, 916
Hpy188III	TCNNGA	3 cut(s)	294, 393, 989
Hpy8I	GTNNAC	2 cut(s)	392, 1039
HpyAV	CCTTC	2 cut(s)	475, 698
HpyCH4III	ACNGT	2 cut(s)	389, 730
HpyCH4IV	ACGT	2 cut(s)	363, 853
HpyCH4V	TGCA	7 cut(s)	135, 236, 452, 578, 590, 830, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 311, 952, 964
HpyF3I	CTNAG	2 cut(s)	284, 878
HpySE526I	ACGT	2 cut(s)	363, 853
Hsp92II	CATG	4 cut(s)	196, 313, 590, 1000
Kzo9I	GATC	4 cut(s)	97, 376, 460, 601
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	5 cut(s)	93, 133, 511, 942, 954
LweI	GCATC	4 cut(s)	223, 416, 670, 967
MaeI	CTAG	4 cut(s)	45, 513, 887, 989
MaeII	ACGT	2 cut(s)	363, 853
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	4 cut(s)	99, 378, 462, 603
MboI	GATC	4 cut(s)	97, 376, 460, 601
MboII	GAAGA	4 cut(s)	24, 103, 332, 335
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	5 cut(s)	172, 289, 493, 645, 930
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	934
MseI	TTAA	2 cut(s)	641, 710
MspI	CCGG	1 cut(s)	1043
MspR9I	CCNGG	3 cut(s)	503, 1043, 1044
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	155, 311, 952, 964
NciI	CCSGG	2 cut(s)	1043, 1044
NdeII	GATC	4 cut(s)	97, 376, 460, 601
NlaIII	CATG	4 cut(s)	196, 313, 590, 1000
NlaIV	GGNNCC	1 cut(s)	845
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	141, 835
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	5 cut(s)	108, 148, 526, 957, 969
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	364
PsiI	TTATAA	2 cut(s)	168, 441
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	1 cut(s)	501
PspLI	CGTACG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	845
PspPI	GGNCC	2 cut(s)	356, 844
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	4 cut(s)	49, 362, 565, 1026
RsaNI	GTAC	4 cut(s)	48, 361, 564, 1025
SacI	GAGCTC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	641, 710
SatI	GCNGC	5 cut(s)	107, 147, 525, 956, 968
Sau3AI	GATC	4 cut(s)	97, 376, 460, 601
Sau96I	GGNCC	2 cut(s)	356, 844
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	3 cut(s)	503, 1043, 1044
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	4 cut(s)	223, 416, 670, 967
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	2 cut(s)	356, 844
SmaI	CCCGGG	1 cut(s)	1044
SnaBI	TACGTA	1 cut(s)	364
Sse9I	AATT	5 cut(s)	172, 289, 493, 645, 930
SsiI	CCGC	2 cut(s)	23, 657
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	4 cut(s)	45, 513, 887, 989
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	501, 1041, 1042
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	389, 730
TaiI	ACGT	2 cut(s)	366, 856
TaqI	TCGA	5 cut(s)	249, 260, 459, 685, 805
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	5 cut(s)	172, 289, 493, 645, 930
TatI	WGTACW	2 cut(s)	47, 1024
TfiI	GAWTC	2 cut(s)	141, 835
Tru1I	TTAA	2 cut(s)	641, 710
Tru9I	TTAA	2 cut(s)	641, 710
TscAI	CASTG	3 cut(s)	211, 424, 733
TseI	GCWGC	5 cut(s)	106, 146, 524, 955, 967
TspDTI	ATGAA	7 cut(s)	267, 279, 534, 610, 791, 848, 879
TspGWI	ACGGA	1 cut(s)	348
TspMI	CCCGGG	1 cut(s)	1042
TspRI	CASTG	3 cut(s)	211, 424, 733
VpaK11BI	GGWCC	2 cut(s)	356, 844
XapI	RAATTY	3 cut(s)	289, 493, 930
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	1 cut(s)	590
XmaI	CCCGGG	1 cut(s)	1042
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	4 cut(s)	45, 513, 887, 989
ZrmI	AGTACT	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.