Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000642.1

Orthogroup ID

OG0016570

Physical Location & Seq

Genomic Coordinates Reverse (-)

167612 .. 170836

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000642.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggcaactcctcctccttatgcggtggcttcttcttcaggcaaagctagtactactcttacagagtatgtgggtgatggaggtgtcggtgtgggagatgatcttgtgctgctcttccatcacatagagtatgcctgcaagagaatcgctgctcttgtggcctctccttataataattcaagccttgccaaacccatgtctctgcccactgctactgggtctgggtctggccgagatgcacccaagcccctcgacattgtttcgaatgaaatcatcttttcgtctcttagaaattctggaaaagtagctgtcatggcttcagaagaagatgatattccagtttggatatctgatgatggtccgtacgtagtagtaacagatcctctagacggttcacgtaacattgaagcatccattcccaccggaacaatctttgggatttataaacgacttgcagagctggatcatctaccaaaggaggagaaggctttgctgaattcacttcaggttggaactaggcttgtagctgctggctatgttctttattcatcagccacaatattctgtaccagctttggtgcaggaacacatgcatttacgctggatcattcaacaggagatttcattctcacacacccaagcttaacaattcctcctcgcggacaaatatattctgtaaatgatgctcgatactttgactggcctgaagggttaaggaagtatatagacactgtgagacaagggaaagggagataccccaagaagtattctgcccgttatatctgttctttggtagctgattttcatcgaactctgctgtatggtggagttgcaatgaatccaagggaccatctacgtcttgtttatgaagctaaccctcttagcttcctagtggagcaagctgggggtaagggttctgatggtaaaaatagaattctttcaatacagccaatcaagctgcatcaaaggctgcccctatttttgggaagtctagaggacatggatgagttagagagttatggagatgtacagcagaaagtgaacccgggatatgaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

353

Amino Acids

38.35

Weight (kDa)

5.86

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64380
fragaria_vesca	FvH4_2g11590
malus_domestica	MD05G1048200.v1.1
prunus_persica	Prupe.8G070500_v2.0.a1
pyrus_communis	pycom05g03990
rosa_chinensis	RchiOBHm_Chr6g0270781
rosa_laevigata	RLG00000013769
rosa_multiflora	Rmu_sc0000642.1_g000021
rosa_roxburghii	Rroxscaffold_7G00197600
rosa_rugosa	Rorug06G0056600
rosa_samantha	Rh6AG175800 Rh6BG179000 Rh6DG167600
rosa_wichuraiana	Rw6G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	171, 444
AccII	CGCG	1 cut(s)	660
AciI	CCGC	2 cut(s)	23, 660
AclWI	GGATC	3 cut(s)	374, 471, 612
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	292, 496, 933
AcuI	CTGAAG	4 cut(s)	21, 303, 488, 726
AfaI	GTAC	4 cut(s)	52, 365, 568, 1029
AfiI	CCNNNNNNNGG	3 cut(s)	389, 659, 982
AgsI	TTSAA	4 cut(s)	180, 407, 612, 942
Alw26I	GTCTC	3 cut(s)	204, 288, 730
AlwI	GGATC	3 cut(s)	374, 471, 612
Ama87I	CYCGRG	1 cut(s)	1045
AoxI	GGCC	3 cut(s)	159, 229, 701
ApeKI	GCWGC	5 cut(s)	109, 149, 527, 958, 970
ApoI	RAATTY	3 cut(s)	292, 496, 933
Asp700I	GAANNNNTTC	1 cut(s)	937
AspS9I	GGNCC	2 cut(s)	359, 847
AsuC2I	CCSGG	2 cut(s)	1046, 1047
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	1045
AvaII	GGWCC	2 cut(s)	359, 847
BbvI	GCAGC	5 cut(s)	96, 136, 514, 945, 957
BccI	CCATC	5 cut(s)	71, 126, 350, 858, 914
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	2 cut(s)	1046, 1047
BcoDI	GTCTC	3 cut(s)	204, 288, 730
BfaI	CTAG	5 cut(s)	48, 386, 516, 890, 992
BisI	GCNGC	5 cut(s)	110, 150, 528, 959, 971
BlsI	GCNGC	5 cut(s)	111, 151, 529, 960, 972
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	1046, 1047
Bme18I	GGWCC	2 cut(s)	359, 847
BmeT110I	CYCGRG	1 cut(s)	1045
BmgT120I	GGNCC	2 cut(s)	359, 847
BmiI	GGNNCC	1 cut(s)	848
BmrFI	CCNGG	2 cut(s)	1046, 1047
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	226, 419, 673, 970
BmuI	ACTGGG	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	1046, 1047
BsaAI	YACGTR	2 cut(s)	367, 398
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	842, 1045
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 659, 982
Bse1I	ACTGG	3 cut(s)	220, 338, 704
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	842, 1045
BseGI	GGATG	2 cut(s)	410, 1009
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	3 cut(s)	389, 659, 982
BseMI	GCAATG	1 cut(s)	840
BseNI	ACTGG	3 cut(s)	220, 338, 704
BseRI	GAGGAG	2 cut(s)	494, 645
BseXI	GCAGC	5 cut(s)	96, 136, 514, 945, 957
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	161, 231, 703
BsiHKCI	CYCGRG	1 cut(s)	1045
BsiSI	CCGG	2 cut(s)	423, 1046
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	3 cut(s)	389, 659, 982
BsmAI	GTCTC	3 cut(s)	204, 288, 730
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	3 cut(s)	161, 231, 703
BsoBI	CYCGRG	1 cut(s)	1045
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	4 cut(s)	100, 379, 463, 604
BspACI	CCGC	2 cut(s)	23, 660
BspANI	GGCC	3 cut(s)	161, 231, 703
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	848
BspPI	GGATC	3 cut(s)	374, 471, 612
BspQI	GCTCTTC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	840
BsrGI	TGTACA	1 cut(s)	1027
BsrI	ACTGG	3 cut(s)	220, 338, 704
BssECI	CCNNGG	2 cut(s)	842, 1045
BssMI	GATC	4 cut(s)	100, 379, 463, 604
BssT1I	CCWWGG	1 cut(s)	842
Bst4CI	ACNGT	2 cut(s)	392, 733
Bst6I	CTCTTC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	1027
BstBAI	YACGTR	2 cut(s)	367, 398
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	136, 532, 900
BstDEI	CTNAG	2 cut(s)	287, 881
BstF5I	GGATG	2 cut(s)	410, 1009
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	4 cut(s)	103, 382, 466, 607
BstMAI	GTCTC	3 cut(s)	204, 288, 730
BstMBI	GATC	4 cut(s)	100, 379, 463, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 314, 955, 967
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	1044, 1045
BstSNI	TACGTA	1 cut(s)	367
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	5 cut(s)	96, 136, 514, 945, 957
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	161, 231, 703
BtsCI	GGATG	2 cut(s)	410, 1009
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 729
Cac8I	GCNNGC	3 cut(s)	136, 532, 900
Cfr13I	GGNCC	2 cut(s)	359, 847
Cfr9I	CCCGGG	1 cut(s)	1045
Csp6I	GTAC	4 cut(s)	51, 364, 567, 1028
CviAII	CATG	4 cut(s)	196, 313, 590, 1000
CviQI	GTAC	4 cut(s)	51, 364, 567, 1028
DdeI	CTNAG	2 cut(s)	287, 881
DpnI	GATC	4 cut(s)	102, 381, 465, 606
DpnII	GATC	4 cut(s)	100, 379, 463, 604
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco105I	TACGTA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	842
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	359, 847
Eco57I	CTGAAG	4 cut(s)	21, 303, 488, 726
Eco88I	CYCGRG	1 cut(s)	1045
EcoRI	GAATTC	2 cut(s)	496, 933
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	842
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	4 cut(s)	199, 316, 593, 1003
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	4 cut(s)	195, 312, 589, 999
Fnu4HI	GCNGC	5 cut(s)	110, 150, 528, 959, 971
FokI	GGATG	2 cut(s)	397, 1016
Fsp4HI	GCNGC	5 cut(s)	110, 150, 528, 959, 971
FspBI	CTAG	5 cut(s)	48, 386, 516, 890, 992
GluI	GCNGC	5 cut(s)	110, 150, 528, 959, 971
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	161, 231, 703
HapII	CCGG	2 cut(s)	423, 1046
Hin1II	CATG	4 cut(s)	199, 316, 593, 1003
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	2 cut(s)	144, 838
HpaII	CCGG	2 cut(s)	423, 1046
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	395, 1042
Hpy188I	TCNGA	3 cut(s)	322, 352, 919
Hpy188III	TCNNGA	3 cut(s)	297, 386, 992
Hpy8I	GTNNAC	2 cut(s)	395, 1042
HpyAV	CCTTC	2 cut(s)	478, 701
HpyCH4III	ACNGT	2 cut(s)	392, 733
HpyCH4IV	ACGT	3 cut(s)	366, 397, 856
HpyCH4V	TGCA	7 cut(s)	138, 239, 455, 581, 593, 833, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 314, 955, 967
HpyF3I	CTNAG	2 cut(s)	287, 881
HpySE526I	ACGT	3 cut(s)	366, 397, 856
Hsp92II	CATG	4 cut(s)	199, 316, 593, 1003
Kzo9I	GATC	4 cut(s)	100, 379, 463, 604
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	895
Lsp1109I	GCAGC	5 cut(s)	96, 136, 514, 945, 957
LweI	GCATC	4 cut(s)	226, 419, 673, 970
MaeI	CTAG	5 cut(s)	48, 386, 516, 890, 992
MaeII	ACGT	3 cut(s)	366, 397, 856
MaeIII	GTNAC	2 cut(s)	373, 398
MalI	GATC	4 cut(s)	102, 381, 465, 606
MboI	GATC	4 cut(s)	100, 379, 463, 604
MboII	GAAGA	5 cut(s)	24, 27, 106, 335, 338
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	5 cut(s)	175, 292, 496, 648, 933
MmeI	TCCRAC	1 cut(s)	490
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	937
MseI	TTAA	2 cut(s)	644, 713
MspI	CCGG	2 cut(s)	423, 1046
MspR9I	CCNGG	2 cut(s)	1046, 1047
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	158, 314, 955, 967
NciI	CCSGG	2 cut(s)	1046, 1047
NdeII	GATC	4 cut(s)	100, 379, 463, 604
NlaIII	CATG	4 cut(s)	199, 316, 593, 1003
NlaIV	GGNNCC	1 cut(s)	848
NmeAIII	GCCGAG	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	593
NspV	TTCGAA	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	937
PfeI	GAWTC	2 cut(s)	144, 838
Pfl23II	CGTACG	1 cut(s)	363
PkrI	GCNGC	5 cut(s)	111, 151, 529, 960, 972
Ppu21I	YACGTR	2 cut(s)	367, 398
PsiI	TTATAA	2 cut(s)	171, 444
PspFI	CCCAGC	1 cut(s)	902
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	848
PspPI	GGNCC	2 cut(s)	359, 847
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	4 cut(s)	52, 365, 568, 1029
RsaNI	GTAC	4 cut(s)	51, 364, 567, 1028
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	644, 713
SatI	GCNGC	5 cut(s)	110, 150, 528, 959, 971
Sau3AI	GATC	4 cut(s)	100, 379, 463, 604
Sau96I	GGNCC	2 cut(s)	359, 847
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	1046, 1047
SfaNI	GCATC	4 cut(s)	226, 419, 673, 970
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	2 cut(s)	359, 847
SmaI	CCCGGG	1 cut(s)	1047
SnaBI	TACGTA	1 cut(s)	367
Sse9I	AATT	5 cut(s)	175, 292, 496, 648, 933
SsiI	CCGC	2 cut(s)	23, 660
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	5 cut(s)	48, 386, 516, 890, 992
StyD4I	CCNGG	2 cut(s)	1044, 1045
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	2 cut(s)	392, 733
TaiI	ACGT	3 cut(s)	369, 400, 859
TaqI	TCGA	4 cut(s)	252, 263, 688, 808
TasI	AATT	5 cut(s)	175, 292, 496, 648, 933
TatI	WGTACW	2 cut(s)	50, 1027
TfiI	GAWTC	2 cut(s)	144, 838
Tru1I	TTAA	2 cut(s)	644, 713
Tru9I	TTAA	2 cut(s)	644, 713
TscAI	CASTG	2 cut(s)	214, 736
TseI	GCWGC	5 cut(s)	109, 149, 527, 958, 970
TspDTI	ATGAA	6 cut(s)	282, 537, 613, 794, 851, 882
TspGWI	ACGGA	1 cut(s)	351
TspMI	CCCGGG	1 cut(s)	1045
TspRI	CASTG	2 cut(s)	214, 736
VpaK11BI	GGWCC	2 cut(s)	359, 847
XapI	RAATTY	3 cut(s)	292, 496, 933
XbaI	TCTAGA	2 cut(s)	385, 991
XceI	RCATGY	1 cut(s)	593
XmaI	CCCGGG	1 cut(s)	1045
XmnI	GAANNNNTTC	1 cut(s)	937
XspI	CTAG	5 cut(s)	48, 386, 516, 890, 992
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.