FvH4_2g12531

Family of unknown function (DUF5306)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016755
Physical Location & Seq
Forward (+)
11005762 .. 11006539
778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12531.t1

Sequence Viewer

Length: 372 bp
ATGGAGTACTCGAAAGTAACAGCTCTTGATGAGGAGGAGAAGGTGACACAGAAGAGGAGGGCATCATCAGTTTCCTATCATTACTTATATCCATGCGATTTGCTTGAAGAAGCACTGAGAGCCCTGTTCAAGTGTTTCGGTCTTGATGATAACAAATCACATGCCGATGAAGAACTAGAACCAGATAGTAGTACCACCAGAGCCAATTCCGTGAAAACAGAACCTTCAAACCCAGAACTACAAGTTGCAGAACCAACAGAGGACGCTGCTGATCCTCCATCTTCAATCCCAGAAACCACTGAAATTGCTGCTGCAAGCACAAGGGTTGTAAAAACACCTATAGGCAGTGACAGGGGACCCCAGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

4.54

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep1_7 PF17232 17 - 61 9.7e-09 Elicitor peptide 1-7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12531
malus_domestica MD00G1161700.v1.1 MD10G1043000.v1.1
prunus_persica Prupe.8G048500_v2.0.a1
pyrus_communis pycom05g03040
rosa_laevigata RLG00000013646
rosa_roxburghii Rroxscaffold_1G00008980 Rroxscaffold_3G00220660 Rroxscaffold_7G00195720
rosa_rugosa Rorug06G0072300
rosa_samantha Rh6AG187900 Rh6BG191300 Rh6CG190300 Rh6DG181900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 266
AfaI GTAC 2 cut(s) 8, 193
AgsI TTSAA 4 cut(s) 107, 130, 228, 285
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 266, 308, 311
AseI ATTAAT 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 253, 295, 298
BccI CCATC 1 cut(s) 286
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 267, 309, 312
BlsI GCNGC 3 cut(s) 268, 310, 313
BmcAI AGTACT 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 357, 358
BmsI GCATC 1 cut(s) 71
BseMII CTCAG 1 cut(s) 107
BseRI GAGGAG 3 cut(s) 47, 50, 70
BseXI GCAGC 3 cut(s) 253, 295, 298
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 357, 358
BspPI GGATC 1 cut(s) 266
BssMI GATC 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 253, 295, 298
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 113, 297, 352
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 7, 192
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 93, 161
CviJI RGCY 3 cut(s) 23, 122, 203
CviKI_1 RGCY 3 cut(s) 23, 122, 203
CviQI GTAC 2 cut(s) 7, 192
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 96, 164
FaiI YATR 4 cut(s) 88, 94, 162, 341
FatI CATG 2 cut(s) 92, 160
Fnu4HI GCNGC 3 cut(s) 267, 309, 312
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 267, 309, 312
FspBI CTAG 1 cut(s) 176
GluI GCNGC 3 cut(s) 267, 309, 312
HgaI GACGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 96, 164
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 26, 143
HpyAV CCTTC 2 cut(s) 34, 234
HpyCH4V TGCA 2 cut(s) 248, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 96, 164
KflI GGGWCCC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 137, 195, 211, 246, 303, 337
Lsp1109I GCAGC 3 cut(s) 253, 295, 298
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 3 cut(s) 16, 43, 347
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 64, 119, 182, 273
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 205, 303, 367
MnlI CCTC 6 cut(s) 25, 28, 48, 51, 253, 285
MseI TTAA 2 cut(s) 366, 370
MslI CAYNNNNRTG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 96, 164
NlaIV GGNNCC 2 cut(s) 357, 358
NmuCI GTSAC 2 cut(s) 43, 347
NspI RCATGY 1 cut(s) 164
PacI TTAATTAA 1 cut(s) 370
PkrI GCNGC 3 cut(s) 268, 310, 313
PpuMI RGGWCCY 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 357, 358
PspPI GGNCC 1 cut(s) 356
PspPPI RGGWCCY 1 cut(s) 356
RsaI GTAC 2 cut(s) 8, 193
RsaNI GTAC 2 cut(s) 7, 192
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 366, 370
SatI GCNGC 3 cut(s) 267, 309, 312
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 356
ScaI AGTACT 1 cut(s) 8
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 25, 45, 226, 340
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 205, 303, 367
SspMI CTAG 1 cut(s) 176
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 128
TasI AATT 3 cut(s) 205, 303, 367
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 2 cut(s) 366, 370
Tru9I TTAA 2 cut(s) 366, 370
TscAI CASTG 3 cut(s) 120, 304, 352
TseFI GTSAC 2 cut(s) 43, 347
TseI GCWGC 3 cut(s) 266, 308, 311
Tsp45I GTSAC 2 cut(s) 43, 347
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 3 cut(s) 120, 304, 352
VpaK11BI GGWCC 1 cut(s) 356
VspI ATTAAT 1 cut(s) 366
XceI RCATGY 1 cut(s) 164
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.