Rh6CG190300

Family of unknown function (DUF5306)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016755
Physical Location & Seq
Forward (+)
31104925 .. 31105386
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG190300.1

Sequence Viewer

Length: 366 bp
ATGGAGTACTCAAAAGTAACAGCTCTTGATGAGGAGGAGAAGGTGACAGACAAGAGACCTTCAGTTTCCTATCATTACTTATATCCATGCGATTTCCTTGAAGAAGCACTAAGGGCCCTGTTCAAGTGTTTCGGTCTTGATAACAAATCACAGGCCTATGAAGAACAAGAACCAGAGAAAACCACCGGAGCAAACCCAGAGACAAGCACTCCTTCAACCCCAGAACTACAAGTTGCAGATCCATCTGACCCAAAAGAAGCAGCTGATCCTCCATCTTCAACCTCAGTAACCACTGAAATTGCTGCTGCAAGCACAAGGGTTGTAAGTCCACCAATAGGTAGTGGCAGAGGACCGCAGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

121

Amino Acids

13.14

Weight (kDa)

4.46

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep1_7 PF17232 16 - 65 1.8e-09 Elicitor peptide 1-7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12531
malus_domestica MD00G1161700.v1.1 MD10G1043000.v1.1
prunus_persica Prupe.8G048500_v2.0.a1
pyrus_communis pycom05g03040
rosa_laevigata RLG00000013646
rosa_roxburghii Rroxscaffold_1G00008980 Rroxscaffold_3G00220660 Rroxscaffold_7G00195720
rosa_rugosa Rorug06G0072300
rosa_samantha Rh6AG187900 Rh6BG191300 Rh6CG190300 Rh6DG181900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AclWI GGATC 2 cut(s) 233, 260
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 101, 124, 216, 279
AluBI AGCT 2 cut(s) 23, 263
AluI AGCT 2 cut(s) 23, 263
Alw26I GTCTC 2 cut(s) 49, 194
AlwI GGATC 2 cut(s) 233, 260
AoxI GGCC 2 cut(s) 114, 153
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 260, 302, 305
AseI ATTAAT 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 114, 115, 350
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 272, 289, 292
BccI CCATC 2 cut(s) 250, 280
BcoDI GTCTC 2 cut(s) 49, 194
BisI GCNGC 3 cut(s) 261, 303, 306
BlsI GCNGC 3 cut(s) 262, 304, 307
BmcAI AGTACT 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 114, 115, 350
BmiI GGNNCC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 47, 50
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 272, 289, 292
BshFI GGCC 2 cut(s) 116, 155
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 49, 194
BsnI GGCC 2 cut(s) 116, 155
Bso31I GGTCTC 1 cut(s) 49
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 238, 265
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 116, 155
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 2 cut(s) 233, 260
BspTNI GGTCTC 1 cut(s) 49
BssMI GATC 2 cut(s) 238, 265
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 110, 283
BstKTI GATC 2 cut(s) 241, 268
BstMAI GTCTC 2 cut(s) 49, 194
BstMBI GATC 2 cut(s) 238, 265
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 272, 289, 292
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 116, 155
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 114, 115, 350
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 87
CviJI RGCY 4 cut(s) 23, 116, 155, 263
CviKI_1 RGCY 4 cut(s) 23, 116, 155, 263
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 110, 283
DpnI GATC 2 cut(s) 240, 267
DpnII GATC 2 cut(s) 238, 265
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 114, 115
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 82, 88, 159
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 261, 303, 306
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 261, 303, 306
GluI GCNGC 3 cut(s) 261, 303, 306
HaeIII GGCC 2 cut(s) 116, 155
HapII CCGG 1 cut(s) 186
Hin1II CATG 1 cut(s) 90
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 26, 137
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 34, 69, 222
HpyCH4V TGCA 2 cut(s) 236, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 110, 283
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 238, 265
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 131, 137, 186, 199, 210, 234
Lsp1109I GCAGC 3 cut(s) 272, 289, 292
MaeIII GTNAC 3 cut(s) 16, 43, 286
MalI GATC 2 cut(s) 240, 267
MboI GATC 2 cut(s) 238, 265
MboII GAAGA 3 cut(s) 113, 173, 267
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 2 cut(s) 297, 361
MnlI CCTC 5 cut(s) 25, 28, 279, 292, 341
MseI TTAA 2 cut(s) 360, 364
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 238, 265
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 43
PacI TTAATTAA 1 cut(s) 364
PceI AGGCCT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 262, 304, 307
PshBI ATTAAT 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 116
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 3 cut(s) 114, 115, 350
PsuI RGATCY 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 360, 364
SatI GCNGC 3 cut(s) 261, 303, 306
Sau3AI GATC 2 cut(s) 238, 265
Sau96I GGNCC 3 cut(s) 114, 115, 350
ScaI AGTACT 1 cut(s) 8
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 25, 45, 61, 265, 284, 340
SinI GGWCC 1 cut(s) 350
Sse9I AATT 2 cut(s) 297, 361
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 155
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 297, 361
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 2 cut(s) 360, 364
Tru9I TTAA 2 cut(s) 360, 364
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 260, 302, 305
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.