Rroxscaffold_7G00195720

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016755
Physical Location & Seq
Reverse (-)
38275336 .. 38291627
16292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195720.1

Sequence Viewer

Length: 1092 bp
ATGAGTATGTGTGGGCATGCAATGGATGGCCTACTTGAGACTGAATTTTCACTTCATCATGGGCAGGTACAATTTCTTAATCTGCTGGGTTTGCTATTTGGGGATGCTACTTGGTTGGTTCTACATAATGAACAGAGTGAGAGACGGGCATTGTGCGAGTATCCTCATCGTATGTCACGGTTAGGATATGCTGGTTTAGAAGATGAGTTGTTGAAAACAATGGATCCTAAGGATATCGATCGTGCTACATTGTGGAAGAAAGCGCGTGAGGATAAATCTGGAAATATCCCAAATGAAAAGGCCAAACAATTGGGAGATAGAATTCGTACTCCTCGGATTGCTAGGAATGCATCCGAGAGGGCTAGTTGCTCATCCGCCAAGGGGAACAGCATGGAAGATTCGGAGAAGCAGTTTGTCCATATTCATGAGCAAGACAATGGAGAAGAAAAAAGCCAAAACTCAAAGGGTGCTCCAAGACAACCGACAAACAAAGAATGTGGCTATTACGTCATGCGCTTTATGAGGGACCTAATCCTTGAAGATATTCAAGGTGTACTAGCTAAGTGGGAAGGACCTATGGAGACCACATATCTTCAAGAAGAAATCGATGAAGTCCGTGATGAGTGGGCAGAATTCGTTAGCGACAAGGCCCTGTTCAAGTGTTTCGGTCTTGATAACAAATCACAGGCCTATGAAGAACAAGAACCAGATAAAACCACCGGAGCAAACCCAGAGACAAGCACTCCTTCAACCCCAGAACTACAAGTTGCAGATCCATCTGACCCAAAAGAAGCTGCTGATCCTCCATCTTCAACCTCAGTAATCACTGAAATTGCTGCTGCAAGCACAAGGGTTCATGACGAAAGAACAGATTGCCGATATGAGGACGGCGTGGGGCATTCGGACACTATGCTATTGCGGCCCTTGAGGGGTAACGAGATGTTTAGCCATCCCGAGATGGGTTGGGCGTGCTTCTACGAGTATCAAGTAAGGTGCGGGCTCGTTGTTTCGATACCGGAAGAGATGCAATATCCGTTATCGTGCTTGAATATCTCCGTGGGGCAGCTATCGCCCAACCCCTCGAGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

363

Amino Acids

41.03

Weight (kDa)

4.95

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12531
malus_domestica MD00G1161700.v1.1 MD10G1043000.v1.1
prunus_persica Prupe.8G048500_v2.0.a1
pyrus_communis pycom05g03040
rosa_laevigata RLG00000013646
rosa_roxburghii Rroxscaffold_1G00008980 Rroxscaffold_3G00220660 Rroxscaffold_7G00195720
rosa_rugosa Rorug06G0072300
rosa_samantha Rh6AG187900 Rh6BG191300 Rh6CG190300 Rh6DG181900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1081
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 1 cut(s) 265
AciI CCGC 3 cut(s) 375, 919, 996
AclWI GGATC 4 cut(s) 218, 231, 767, 794
AcsI RAATTY 3 cut(s) 44, 321, 632
AfaI GTAC 3 cut(s) 69, 328, 555
AfiI CCNNNNNNNGG 4 cut(s) 381, 883, 929, 959
AgsI TTSAA 8 cut(s) 214, 539, 548, 596, 658, 750, 813, 1048
AluBI AGCT 3 cut(s) 560, 794, 1066
AluI AGCT 3 cut(s) 560, 794, 1066
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 4 cut(s) 32, 136, 575, 728
AlwI GGATC 4 cut(s) 218, 231, 767, 794
Ama87I CYCGRG 2 cut(s) 953, 1081
AoxI GGCC 5 cut(s) 28, 300, 648, 687, 920
ApeKI GCWGC 4 cut(s) 794, 836, 839, 1063
ApoI RAATTY 3 cut(s) 44, 321, 632
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 265, 516
AspS9I GGNCC 4 cut(s) 526, 572, 649, 921
AvaI CYCGRG 2 cut(s) 953, 1081
AvaII GGWCC 2 cut(s) 526, 572
AxyI CCTNAGG 1 cut(s) 228
BamHI GGATCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 1002
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 4 cut(s) 781, 823, 826, 1075
BccI CCATC 5 cut(s) 20, 784, 814, 952, 957
BceAI ACGGC 1 cut(s) 904
BciVI GTATCC 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 32, 136, 575, 728
BfaI CTAG 3 cut(s) 342, 363, 557
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 5 cut(s) 795, 837, 840, 920, 1064
BlsI GCNGC 5 cut(s) 796, 838, 841, 921, 1065
Bme18I GGWCC 2 cut(s) 526, 572
BmeT110I CYCGRG 2 cut(s) 953, 1081
BmgT120I GGNCC 4 cut(s) 526, 572, 649, 921
BmiI GGNNCC 2 cut(s) 225, 527
BmsI GCATC 3 cut(s) 94, 359, 1014
BpuEI CTTGAG 2 cut(s) 56, 946
Bsa29I ATCGAT 2 cut(s) 237, 606
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 3 cut(s) 332, 378, 1056
BsaWI WCCGGW 2 cut(s) 719, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 727, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 883, 929, 959
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 237
BseCI ATCGAT 2 cut(s) 237, 606
BseDI CCNNGG 3 cut(s) 332, 378, 1056
BseGI GGATG 5 cut(s) 31, 109, 350, 371, 949
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 381, 883, 929, 959
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 831
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 4 cut(s) 781, 823, 826, 1075
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 5 cut(s) 30, 302, 650, 689, 922
BshVI ATCGAT 2 cut(s) 237, 606
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 472
BsiHKCI CYCGRG 2 cut(s) 953, 1081
BsiSI CCGG 2 cut(s) 720, 1016
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 4 cut(s) 381, 883, 929, 959
BsmAI GTCTC 4 cut(s) 32, 136, 575, 728
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 539
BsmI GAATGC 2 cut(s) 352, 898
BsnI GGCC 5 cut(s) 30, 302, 650, 689, 922
Bso31I GGTCTC 1 cut(s) 575
BsoBI CYCGRG 2 cut(s) 953, 1081
Bsp1286I GDGCHC 2 cut(s) 472, 1002
Bsp143I GATC 4 cut(s) 223, 238, 772, 799
BspACI CCGC 3 cut(s) 375, 919, 996
BspANI GGCC 5 cut(s) 30, 302, 650, 689, 922
BspCNI CTCAG 1 cut(s) 830
BspDI ATCGAT 2 cut(s) 237, 606
BspFNI CGCG 1 cut(s) 265
BspHI TCATGA 2 cut(s) 424, 856
BspLI GGNNCC 2 cut(s) 225, 527
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 4 cut(s) 218, 231, 767, 794
BspTNI GGTCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 332, 378, 1056
BssMI GATC 4 cut(s) 223, 238, 772, 799
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 1014
BstC8I GCNNGC 4 cut(s) 18, 844, 970, 998
BstDEI CTNAG 3 cut(s) 228, 561, 817
BstDSI CCRYGG 1 cut(s) 1056
BstF5I GGATG 5 cut(s) 31, 109, 350, 371, 949
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 2 cut(s) 265, 516
BstKTI GATC 4 cut(s) 226, 241, 775, 802
BstMAI GTCTC 4 cut(s) 32, 136, 575, 728
BstMBI GATC 4 cut(s) 223, 238, 772, 799
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 91, 347, 919, 1069
BstNSI RCATGY 1 cut(s) 20
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 781, 823, 826, 1075
BstX2I RGATCY 2 cut(s) 223, 772
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 2 cut(s) 223, 772
Bsu15I ATCGAT 2 cut(s) 237, 606
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 5 cut(s) 30, 302, 650, 689, 922
BsuTUI ATCGAT 2 cut(s) 237, 606
BtgI CCRYGG 1 cut(s) 1056
BtsCI GGATG 5 cut(s) 31, 109, 350, 371, 949
BtsIMutI CAGTG 1 cut(s) 825
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 18, 844, 970, 998
CciI TCATGA 2 cut(s) 424, 856
CfoI GCGC 2 cut(s) 265, 516
Cfr13I GGNCC 4 cut(s) 526, 572, 649, 921
ClaI ATCGAT 2 cut(s) 237, 606
Csp6I GTAC 3 cut(s) 68, 327, 554
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 6 cut(s) 17, 59, 391, 425, 511, 857
CviQI GTAC 3 cut(s) 68, 327, 554
DdeI CTNAG 3 cut(s) 228, 561, 817
DpnI GATC 4 cut(s) 225, 240, 774, 801
DpnII GATC 4 cut(s) 223, 238, 772, 799
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
EciI GGCGGA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 1002
Eco31I GGTCTC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 526, 572
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 953, 1081
EcoO109I RGGNCCY 3 cut(s) 526, 572, 649
EcoRI GAATTC 2 cut(s) 321, 632
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 6 cut(s) 20, 62, 394, 428, 514, 860
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FaqI GGGAC 1 cut(s) 539
FatI CATG 6 cut(s) 16, 58, 390, 424, 510, 856
FauI CCCGC 1 cut(s) 989
Fnu4HI GCNGC 5 cut(s) 795, 837, 840, 920, 1064
FokI GGATG 5 cut(s) 38, 116, 337, 358, 936
FriOI GRGCYC 1 cut(s) 1002
Fsp4HI GCNGC 5 cut(s) 795, 837, 840, 920, 1064
FspBI CTAG 3 cut(s) 342, 363, 557
GlaI GCGC 2 cut(s) 264, 515
GluI GCNGC 5 cut(s) 795, 837, 840, 920, 1064
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 5 cut(s) 30, 302, 650, 689, 922
HapII CCGG 2 cut(s) 720, 1016
HhaI GCGC 2 cut(s) 265, 516
Hin1II CATG 6 cut(s) 20, 62, 394, 428, 514, 860
Hin6I GCGC 2 cut(s) 263, 514
HinP1I GCGC 2 cut(s) 263, 514
HinfI GANTC 1 cut(s) 398
HpaII CCGG 2 cut(s) 720, 1016
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 5 cut(s) 336, 355, 403, 781, 904
Hpy188III TCNNGA 6 cut(s) 279, 425, 596, 671, 857, 953
Hpy8I GTNNAC 1 cut(s) 554
HpyAV CCTTC 2 cut(s) 563, 756
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 5 cut(s) 20, 350, 770, 842, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 347, 919, 1069
HpyF3I CTNAG 3 cut(s) 228, 561, 817
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 6 cut(s) 20, 62, 394, 428, 514, 860
HspAI GCGC 2 cut(s) 263, 514
Kzo9I GATC 4 cut(s) 223, 238, 772, 799
LmnI GCTCC 2 cut(s) 475, 722
Lsp1109I GCAGC 4 cut(s) 781, 823, 826, 1075
LweI GCATC 3 cut(s) 94, 359, 1014
MaeI CTAG 3 cut(s) 342, 363, 557
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 174, 932
MalI GATC 4 cut(s) 225, 240, 774, 801
MboI GATC 4 cut(s) 223, 238, 772, 799
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 2 cut(s) 223, 772
MhlI GDGCHC 2 cut(s) 472, 1002
MluCI AATT 6 cut(s) 44, 71, 308, 321, 632, 831
Mph1103I ATGCAT 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 2 cut(s) 720, 1016
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 2 cut(s) 352, 898
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 4 cut(s) 91, 347, 919, 1069
NdeII GATC 4 cut(s) 223, 238, 772, 799
NlaIII CATG 6 cut(s) 20, 62, 394, 428, 514, 860
NlaIV GGNNCC 2 cut(s) 225, 527
NmuCI GTSAC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 1081
PagI TCATGA 2 cut(s) 424, 856
PceI AGGCCT 1 cut(s) 689
PctI GAATGC 2 cut(s) 352, 898
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 796, 838, 841, 921, 1065
Ple19I CGATCG 1 cut(s) 241
PpuMI RGGWCCY 2 cut(s) 526, 572
Psp5II RGGWCCY 2 cut(s) 526, 572
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 225, 527
PspPI GGNCC 4 cut(s) 526, 572, 649, 921
PspPPI RGGWCCY 2 cut(s) 526, 572
PspXI VCTCGAGB 1 cut(s) 1081
PsuI RGATCY 2 cut(s) 223, 772
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 3 cut(s) 69, 328, 555
RsaNI GTAC 3 cut(s) 68, 327, 554
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 5 cut(s) 795, 837, 840, 920, 1064
Sau3AI GATC 4 cut(s) 223, 238, 772, 799
Sau96I GGNCC 4 cut(s) 526, 572, 649, 921
SduI GDGCHC 2 cut(s) 472, 1002
SfaNI GCATC 3 cut(s) 94, 359, 1014
Sfr274I CTCGAG 1 cut(s) 1081
SinI GGWCC 2 cut(s) 526, 572
SlaI CTCGAG 1 cut(s) 1081
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 35, 925, 1081
SmoI CTYRAG 3 cut(s) 35, 925, 1081
SphI GCATGC 1 cut(s) 20
Sse9I AATT 6 cut(s) 44, 71, 308, 321, 632, 831
SseBI AGGCCT 1 cut(s) 689
SsiI CCGC 3 cut(s) 375, 919, 996
SspMI CTAG 3 cut(s) 342, 363, 557
StuI AGGCCT 1 cut(s) 689
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 510
TaqI TCGA 4 cut(s) 237, 606, 1010, 1082
TaqII GACCGA 1 cut(s) 656
TasI AATT 6 cut(s) 44, 71, 308, 321, 632, 831
TatI WGTACW 1 cut(s) 553
TauI GCSGC 1 cut(s) 922
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 4 cut(s) 794, 836, 839, 1063
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 7 cut(s) 44, 144, 309, 413, 624, 708, 845
TspGWI ACGGA 3 cut(s) 605, 1023, 1045
TspRI CASTG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 526, 572
XapI RAATTY 3 cut(s) 44, 321, 632
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 342, 363, 557
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.