Rroxscaffold_1G00008980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016755
Physical Location & Seq
Forward (+)
11277362 .. 11283724
6363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008980.1

Sequence Viewer

Length: 288 bp
ATGAGTATGTGTGGGCATGCAATGGATGACCTACTTGAGACCGAATTTTCACTTCATCATGGGCAGGTACAATTTCTTAATCTGCTGGGTTTGCTATTTGGGAATGCTACTTGGTTGGTAAAAGGATTTGGATTACTTCGATTCTGCTTAAGCGTGACAAGGAGGAGAAGGCGAGCTCGCGTGCCCGAATTCCGTCGCGGGTCGGCGGAGAAGGGAGAAATCGGAGGAAGAAGAAACCGGACCGAAGAGGAAGAAAGGGTCGGGGAGAGGAGAGAGAAAAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.05

Weight (kDa)

10.62

Isoelectric Point (pI)

75.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12531
malus_domestica MD00G1161700.v1.1 MD10G1043000.v1.1
prunus_persica Prupe.8G048500_v2.0.a1
pyrus_communis pycom05g03040
rosa_laevigata RLG00000013646
rosa_roxburghii Rroxscaffold_1G00008980 Rroxscaffold_3G00220660 Rroxscaffold_7G00195720
rosa_rugosa Rorug06G0072300
rosa_samantha Rh6AG187900 Rh6BG191300 Rh6CG190300 Rh6DG181900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 2 cut(s) 180, 198
AciI CCGC 2 cut(s) 198, 206
AcsI RAATTY 2 cut(s) 44, 188
AfaI GTAC 1 cut(s) 69
AflII CTTAAG 1 cut(s) 148
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 44, 188
AspS9I GGNCC 1 cut(s) 240
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 32
BfrI CTTAAG 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 27
BseGI GGATG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 178, 283
BseSI GKGCMC 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 180, 198
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 238, 283
BsmAI GTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 178, 186
BspACI CCGC 2 cut(s) 198, 206
BspFNI CGCG 2 cut(s) 180, 198
BspMI ACCTGC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 148
BstC8I GCNNGC 4 cut(s) 18, 174, 178, 182
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 2 cut(s) 180, 198
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 2 cut(s) 180, 198
BtsCI GGATG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 18, 174, 178, 182
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 240
CpoI CGGWCCG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 68
CspI CGGWCCG 1 cut(s) 240
CviAII CATG 2 cut(s) 17, 59
CviJI RGCY 2 cut(s) 176, 282
CviKI_1 RGCY 2 cut(s) 176, 282
CviQI GTAC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 2 cut(s) 20, 62
FaiI YATR 3 cut(s) 8, 18, 60
FatI CATG 2 cut(s) 16, 58
FauI CCCGC 1 cut(s) 191
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 89
HapII CCGG 2 cut(s) 238, 283
Hin1II CATG 2 cut(s) 20, 62
HinfI GANTC 1 cut(s) 141
HpaII CCGG 2 cut(s) 238, 283
Hpy188I TCNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 162, 205
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
Hsp92II CATG 2 cut(s) 20, 62
LpnPI CCDG 3 cut(s) 50, 71, 251
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 4 cut(s) 240, 243, 257, 263
MhlI GDGCHC 2 cut(s) 178, 186
MluCI AATT 3 cut(s) 44, 71, 188
MnlI CCTC 4 cut(s) 156, 218, 241, 261
MseI TTAA 2 cut(s) 78, 149
MspCI CTTAAG 1 cut(s) 148
MspI CCGG 2 cut(s) 238, 283
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 2 cut(s) 180, 198
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 20, 62
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
Rsr2I CGGWCCG 1 cut(s) 240
RsrII CGGWCCG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 78, 149
Sau96I GGNCC 1 cut(s) 240
SduI GDGCHC 2 cut(s) 178, 186
SetI ASST 3 cut(s) 33, 69, 178
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 35, 148
SmoI CTYRAG 2 cut(s) 35, 148
SphI GCATGC 1 cut(s) 20
Sse9I AATT 3 cut(s) 44, 71, 188
SsiI CCGC 2 cut(s) 198, 206
SstI GAGCTC 1 cut(s) 178
TaqI TCGA 1 cut(s) 139
TaqII GACCGA 2 cut(s) 56, 257
TasI AATT 3 cut(s) 44, 71, 188
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 78, 149
Tru9I TTAA 2 cut(s) 78, 149
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 2 cut(s) 44, 188
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.