Rh6DG181900

Family of unknown function (DUF5306)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016755
Physical Location & Seq
Forward (+)
32242264 .. 32242727
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG181900.1

Sequence Viewer

Length: 369 bp
ATGGAGTATTCGAAAGTAACAGCTCTTGATGAGGAGGAGAAGGTGACAGACAAGAGACCTTCAGTTTCCTATCATTACTTATATCCATGCGATTTCCTTGAAGAAGCACTAAGGGCCCTGTTCAAGTGTTTCGGTCTTGATAACAACTCACAGGCCTATGAAGAACAAGAACCAGAGAAAACCACCAGAGCAAACCCAGAGACAAGCACTCCTAATTCAACCCCAGAACTACAAGTTGCAGATCCATCTGACCCAAAAGAAGCTGCTGATCCTCCATCTTCAACCTCAGTAACCACTGAAATTGCTGCTGCAAGCACAAGGGCTGTAAGTCCACCAATAGGCAGTGGTAGAGGACCGCAGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

122

Amino Acids

13.31

Weight (kDa)

4.46

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep1_7 PF17232 16 - 71 2.1e-09 Elicitor peptide 1-7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12531
malus_domestica MD00G1161700.v1.1 MD10G1043000.v1.1
prunus_persica Prupe.8G048500_v2.0.a1
pyrus_communis pycom05g03040
rosa_laevigata RLG00000013646
rosa_roxburghii Rroxscaffold_1G00008980 Rroxscaffold_3G00220660 Rroxscaffold_7G00195720
rosa_rugosa Rorug06G0072300
rosa_samantha Rh6AG187900 Rh6BG191300 Rh6CG190300 Rh6DG181900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 236, 263
AcuI CTGAAG 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 4 cut(s) 101, 124, 219, 282
AluBI AGCT 2 cut(s) 23, 263
AluI AGCT 2 cut(s) 23, 263
Alw26I GTCTC 2 cut(s) 49, 194
AlwI GGATC 2 cut(s) 236, 263
AoxI GGCC 2 cut(s) 114, 153
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 263, 305, 308
AspS9I GGNCC 3 cut(s) 114, 115, 353
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 250, 292, 295
BccI CCATC 2 cut(s) 253, 283
BcoDI GTCTC 2 cut(s) 49, 194
BisI GCNGC 3 cut(s) 264, 306, 309
BlsI GCNGC 3 cut(s) 265, 307, 310
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 114, 115, 353
BmiI GGNNCC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 47, 50
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 250, 292, 295
BshFI GGCC 2 cut(s) 116, 155
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 49, 194
BsnI GGCC 2 cut(s) 116, 155
Bso31I GGTCTC 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 11
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 241, 268
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 116, 155
BspCNI CTCAG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 2 cut(s) 236, 263
BspT104I TTCGAA 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 49
BssMI GATC 2 cut(s) 241, 268
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 110, 286
BstKTI GATC 2 cut(s) 244, 271
BstMAI GTCTC 2 cut(s) 49, 194
BstMBI GATC 2 cut(s) 241, 268
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 250, 292, 295
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 116, 155
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 294, 349
Cac8I GCNNGC 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 114, 115, 353
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 1 cut(s) 87
CviJI RGCY 5 cut(s) 23, 116, 155, 263, 323
CviKI_1 RGCY 5 cut(s) 23, 116, 155, 263, 323
DdeI CTNAG 2 cut(s) 110, 286
DpnI GATC 2 cut(s) 243, 270
DpnII GATC 2 cut(s) 241, 268
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 114, 115
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 82, 88, 159
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 264, 306, 309
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 264, 306, 309
GluI GCNGC 3 cut(s) 264, 306, 309
HaeIII GGCC 2 cut(s) 116, 155
Hin1II CATG 1 cut(s) 90
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 26, 137
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 34, 69
HpyCH4V TGCA 2 cut(s) 239, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 110, 286
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 241, 268
LpnPI CCDG 6 cut(s) 131, 137, 186, 199, 210, 237
Lsp1109I GCAGC 3 cut(s) 250, 292, 295
MaeIII GTNAC 3 cut(s) 16, 43, 289
MalI GATC 2 cut(s) 243, 270
MboI GATC 2 cut(s) 241, 268
MboII GAAGA 3 cut(s) 113, 173, 270
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 2 cut(s) 214, 300
MnlI CCTC 5 cut(s) 25, 28, 282, 295, 344
MseI TTAA 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 241, 268
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 43
NspV TTCGAA 1 cut(s) 11
PceI AGGCCT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 265, 307, 310
PspN4I GGNNCC 1 cut(s) 116
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 3 cut(s) 114, 115, 353
PsuI RGATCY 1 cut(s) 241
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 264, 306, 309
Sau3AI GATC 2 cut(s) 241, 268
Sau96I GGNCC 3 cut(s) 114, 115, 353
SduI GDGCHC 1 cut(s) 118
SetI ASST 5 cut(s) 25, 45, 61, 265, 287
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 353
Sse9I AATT 2 cut(s) 214, 300
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 356
StuI AGGCCT 1 cut(s) 155
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 214, 300
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 301, 349
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 263, 305, 308
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 301, 349
VpaK11BI GGWCC 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.