Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015473

Physical Location & Seq

Genomic Coordinates Reverse (-)

11759850 .. 11763281

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGGTTTCCGTAACGTCATCGTCAATTCCTTCTTCTCTCTGCTCTGACCGCGCCGCACGCTTGGCTGCTTCCTCCTCCTCTTCTTCTTCCTCGAATCTATCATCCTCTTCCTCTCTGCAATTCCCCGTACAGCTCCGACGCCTTCGGATTGGAACTAACGGAGCCTCCGCTCCATCTCGGCATCGAATTCTTGCGCCGGTGGAGGCAAAGAAACAAACATTCTCCAACTTTGATGATTTGCTGGCTAATTCTGATAGACCTGTCCTGGTTGACTTCTATGCAACTTGGTGCGGTCCTTGTCAATTTATGGCCCCTATCCTCAATGAAGTCAGTATTACTCTGAATGACAAGATCCAGGTGGTGAAAATTGACACTGAGAAGTATCCAAGCATTGCTGACAAGTATGGAATACAGGCATTGCCTACTTTCATTATATTTAAGGATGGAGAACCATATGACCGCTTTGAGGGTGCTTTGAATGCTGATCAGCTTATTGAACGAATTGAAACGGCTTTGAAAGTGAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

7.68

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	72 - 170	2.2e-30	Thioredoxin
Thioredoxin_2	PF13098	85 - 167	5.1e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76760
fragaria_vesca	FvH4_2g13460
malus_domestica	MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica	Prupe.8G033500_v2.0.a1
pyrus_communis	pycom10g01850
rosa_chinensis	RchiOBHm_Chr6g0275081
rosa_laevigata	RLG00000013499
rosa_multiflora	Rmu_sc0000447.1_g000014
rosa_roxburghii	Rroxscaffold_7G00193680
rosa_rugosa	Rorug06G0088000
rosa_samantha	Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana	Rw6G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	54
AciI	CCGC	6 cut(s)	5, 52, 57, 171, 294, 463
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	481, 500, 509, 520
AjnI	CCWGG	2 cut(s)	267, 357
AluBI	AGCT	2 cut(s)	136, 493
AluI	AGCT	2 cut(s)	136, 493
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	56, 199
AspS9I	GGNCC	2 cut(s)	296, 313
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	184, 440
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	2 cut(s)	269, 359
BciVI	GTATCC	1 cut(s)	396
BclI	TGATCA	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	57, 69
BlsI	GCNGC	2 cut(s)	58, 70
Bme1390I	CCNGG	2 cut(s)	269, 359
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	296, 313
BmiI	GGNNCC	2 cut(s)	166, 315
BmrFI	CCNGG	2 cut(s)	269, 359
BmsI	GCATC	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse118I	RCCGGY	1 cut(s)	199
Bse3DI	GCAATG	2 cut(s)	393, 419
BseBI	CCWGG	2 cut(s)	269, 359
BseGI	GGATG	2 cut(s)	104, 451
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	2 cut(s)	393, 419
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	2 cut(s)	67, 70
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	354, 487
BspACI	CCGC	6 cut(s)	5, 52, 57, 171, 294, 463
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	166, 315
BspPI	GGATC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	393, 419
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssMI	GATC	2 cut(s)	354, 487
BssNI	GRCGYC	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	269, 359
Bst6I	CTCTTC	2 cut(s)	88, 115
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	61, 246
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	104, 451
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	56, 199
BstKTI	GATC	2 cut(s)	357, 490
BstMBI	GATC	2 cut(s)	354, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 60, 65, 482
BstNI	CCWGG	2 cut(s)	269, 359
BstSCI	CCNGG	2 cut(s)	267, 357
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	104, 451
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	61, 246
CfoI	GCGC	2 cut(s)	56, 199
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	296, 313
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	131
CviJI	RGCY	7 cut(s)	68, 136, 167, 248, 314, 493, 515
CviKI_1	RGCY	7 cut(s)	68, 136, 167, 248, 314, 493, 515
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	356, 489
DpnII	GATC	2 cut(s)	354, 487
Eam1104I	CTCTTC	2 cut(s)	88, 115
EarI	CTCTTC	2 cut(s)	88, 115
Eco47I	GGWCC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	267, 357
FaiI	YATR	6 cut(s)	282, 311, 408, 437, 457, 459
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	57, 69
FokI	GGATG	2 cut(s)	91, 458
Fsp4HI	GCNGC	2 cut(s)	57, 69
GlaI	GCGC	2 cut(s)	55, 198
GluI	GCNGC	2 cut(s)	57, 69
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	56, 199
Hin1I	GRCGYC	1 cut(s)	142
Hin6I	GCGC	2 cut(s)	54, 197
HinP1I	GCGC	2 cut(s)	54, 197
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	49, 140, 150, 256, 345
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	42, 155
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	121, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 60, 65, 482
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	142
HspAI	GCGC	2 cut(s)	54, 197
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	354, 487
LmnI	GCTCC	3 cut(s)	141, 164, 178
LpnPI	CCDG	8 cut(s)	213, 230, 254, 276, 281, 344, 371, 401
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	356, 489
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	2 cut(s)	354, 487
MboII	GAAGA	5 cut(s)	27, 75, 78, 81, 102
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	7 cut(s)	27, 122, 189, 250, 305, 369, 504
MmeI	TCCRAC	2 cut(s)	163, 252
MseI	TTAA	1 cut(s)	441
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	269, 359
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	2 cut(s)	269, 359
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	51, 60, 65, 482
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	354, 487
NlaIV	GGNNCC	2 cut(s)	166, 315
NmeAIII	GCCGAG	1 cut(s)	160
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	58, 70
Psp6I	CCWGG	2 cut(s)	267, 357
PspGI	CCWGG	2 cut(s)	267, 357
PspN4I	GGNNCC	2 cut(s)	166, 315
PspPI	GGNCC	2 cut(s)	296, 313
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	57, 69
Sau3AI	GATC	2 cut(s)	354, 487
Sau96I	GGNCC	2 cut(s)	296, 313
ScrFI	CCNGG	2 cut(s)	269, 359
SetI	ASST	5 cut(s)	20, 138, 265, 363, 495
SfaNI	GCATC	1 cut(s)	193
SgrAI	CRCCGGYG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	7 cut(s)	27, 122, 189, 250, 305, 369, 504
SsiI	CCGC	6 cut(s)	5, 52, 57, 171, 294, 463
StyD4I	CCNGG	2 cut(s)	267, 357
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	95, 187
TasI	AATT	7 cut(s)	27, 122, 189, 250, 305, 369, 504
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	342, 421
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.