Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015473

Physical Location & Seq

Genomic Coordinates Reverse (-)

36231528 .. 36235174

Gene Structure 3647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGTTTCCGTTGCAGCATCGTCAATTCTTTCTCTCTGCTCTGACCGCACCACTCGCCTGGCTTCTTCATCCTCGAATCTATCTTCCTCTTCTTCTCTGCAATTCCCCCTACACCTCCGACGCCTTCGGATTCCAACATATGGAGTCTCCGCTCCTTCTCGGCCTCGAATTCTTCCTCCGGTTGAAGCAAAGAAGCAAACATTTTCCAACTTTGACGATTTACTGGCTAATTCTGATAGACCTGTCCTGGTTGACTTCTATGCGACTTGGTGTGGTCCTTGTCAATTTATGGCTCCTATCCTCAATGAAGTCAGTATTACTCTGAATGACAAGATCCAGGTGGTGAAAATTGACACTGAGAAATACCCCAGCATTGCTGACAAGTATGGAATACAGGCATTGCCTACTTTCATTATATTTAAGGATGGAAAACCATATGACCGCTTTGAGGGTGCTTTGAATGCTGATCAGCTTATCGAACGAATTGAAACTGCTTTGAAAGTGAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

8.79

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	66 - 164	1.2e-30	Thioredoxin
Thioredoxin_2	PF13098	79 - 161	2.8e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76760
fragaria_vesca	FvH4_2g13460
malus_domestica	MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica	Prupe.8G033500_v2.0.a1
pyrus_communis	pycom10g01850
rosa_chinensis	RchiOBHm_Chr6g0275081
rosa_laevigata	RLG00000013499
rosa_multiflora	Rmu_sc0000447.1_g000014
rosa_roxburghii	Rroxscaffold_7G00193680
rosa_rugosa	Rorug06G0088000
rosa_samantha	Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana	Rw6G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	155
AciI	CCGC	4 cut(s)	5, 49, 153, 445
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	143, 451
AgsI	TTSAA	4 cut(s)	188, 463, 491, 502
AjnI	CCWGG	3 cut(s)	60, 249, 339
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	62, 251, 341
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	62, 251, 341
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	3 cut(s)	62, 251, 341
BmsI	GCATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 451
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	375, 401
BseBI	CCWGG	3 cut(s)	62, 251, 341
BseGI	GGATG	2 cut(s)	71, 433
BseLI	CCNNNNNNNGG	2 cut(s)	143, 451
BseMI	GCAATG	2 cut(s)	375, 401
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	143, 451
BsmAI	GTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	336, 469
BspACI	CCGC	4 cut(s)	5, 49, 153, 445
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	375, 401
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	336, 469
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	3 cut(s)	62, 251, 341
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	71, 433
BstKTI	GATC	2 cut(s)	339, 472
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	336, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 57, 464
BstNI	CCWGG	3 cut(s)	62, 251, 341
BstSCI	CCNGG	3 cut(s)	60, 249, 339
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	71, 433
BtsIMutI	CAGTG	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	132
CviJI	RGCY	5 cut(s)	65, 166, 230, 296, 475
CviKI_1	RGCY	5 cut(s)	65, 166, 230, 296, 475
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	338, 471
DpnII	GATC	2 cut(s)	336, 469
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	60, 249, 339
FaiI	YATR	8 cut(s)	142, 144, 264, 293, 390, 419, 439, 441
FauNDI	CATATG	2 cut(s)	142, 439
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	58, 440
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	79, 133, 147
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	46, 122, 132, 238, 327
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	137, 168
HpyCH4V	TGCA	2 cut(s)	17, 103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 57, 464
HpyF3I	CTNAG	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	336, 469
LmnI	GCTCC	2 cut(s)	160, 301
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	29
MalI	GATC	2 cut(s)	338, 471
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	2 cut(s)	336, 469
MboII	GAAGA	5 cut(s)	60, 78, 84, 87, 167
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	7 cut(s)	27, 104, 171, 232, 287, 351, 486
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	3 cut(s)	145, 161, 234
MnlI	CCTC	7 cut(s)	85, 100, 128, 177, 189, 314, 445
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	62, 251, 341
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	62, 251, 341
MwoI	GCNNNNNNNGC	3 cut(s)	48, 57, 464
NdeI	CATATG	2 cut(s)	142, 439
NdeII	GATC	2 cut(s)	336, 469
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	142
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	79, 133
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	60, 249, 339
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	60, 249, 339
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	336, 469
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	62, 251, 341
SetI	ASST	4 cut(s)	120, 247, 345, 477
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	7 cut(s)	27, 104, 171, 232, 287, 351, 486
SsiI	CCGC	4 cut(s)	5, 49, 153, 445
StyD4I	CCNGG	3 cut(s)	60, 249, 339
TaqI	TCGA	3 cut(s)	77, 169, 480
TasI	AATT	7 cut(s)	27, 104, 171, 232, 287, 351, 486
TfiI	GAWTC	2 cut(s)	79, 133
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	60, 324, 403
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.