Prupe.8G033500_v2.0.a1

Thioredoxin Y1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
3115590 .. 3119522
3933 bp
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UTR
Exon/CDS
Intron
Prupe.8G033500.1

Sequence Viewer

Length: 534 bp
ATGGCGGTTTCTGTTACGGCATCCACAATTTCTTCTTTCCGCTCTGATCGTACGACTCGAATAGCTGCGACTTCTTCATCCTCTGCTTCTTGTTCAAAGCTATCTTCATCGTCTTCTCTGCAAGTTCCTGTACAGCTTCGATGTGTTCGCATCGGAAGAAGTGGAGTCTCGGCTCCCTCCCGGCCTCGGATTCTTCCTGTGGTTGCAGCAAAGAAGCAAACATTTTCCTCCTTTGAGGATTTGCTGGCTACTTCTGACAAACCTATTTTGGTTGACTTCTATGCAACCTGGTGTGGTCCTTGTCAATTTATGGCTCCTATCCTCAATGAAGTGAGTATTACTCTGAATGACAAGATCCAGGTGGTGAAAATTGACACTGAGAAGTATCCTAGCATTGCTGATAAATACAACATACAGGCATTGCCTACTTTTATCATATTTAAGGATGGAGAACCATATGACCGCTTTGAGGGTGCTTTGACTGCCGATCAGCTTGTCGAACGAATTGAAACTACTTTGAAAGTTAAGCAATAG

Protein Analysis

178

Amino Acids

19.37

Weight (kDa)

8.93

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76760
fragaria_vesca FvH4_2g13460
malus_domestica MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica Prupe.8G033500_v2.0.a1
pyrus_communis pycom10g01850
rosa_chinensis RchiOBHm_Chr6g0275081
rosa_laevigata RLG00000013499
rosa_multiflora Rmu_sc0000447.1_g000014
rosa_roxburghii Rroxscaffold_7G00193680
rosa_rugosa Rorug06G0088000
rosa_samantha Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana Rw6G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 3 cut(s) 5, 40, 463
AclWI GGATC 1 cut(s) 349
AfaI GTAC 2 cut(s) 52, 132
AfiI CCNNNNNNNGG 2 cut(s) 186, 469
AgsI TTSAA 3 cut(s) 96, 509, 520
AjnI CCWGG 2 cut(s) 287, 357
AluBI AGCT 4 cut(s) 65, 100, 136, 493
AluI AGCT 4 cut(s) 65, 100, 136, 493
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 65, 206
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 52, 218
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 289, 359
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 2 cut(s) 66, 207
BlsI GCNGC 2 cut(s) 67, 208
Bme1390I CCNGG 3 cut(s) 181, 289, 359
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 174, 315
BmrFI CCNGG 3 cut(s) 181, 289, 359
BmsI GCATC 2 cut(s) 29, 159
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 469
Bse3DI GCAATG 2 cut(s) 393, 419
BseBI CCWGG 2 cut(s) 289, 359
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 3 cut(s) 20, 77, 451
BseLI CCNNNNNNNGG 2 cut(s) 186, 469
BseMI GCAATG 2 cut(s) 393, 419
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 52, 218
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 181
BsiWI CGTACG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 186, 469
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 46, 354, 487
BspACI CCGC 3 cut(s) 5, 40, 463
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 174, 315
BspPI GGATC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 2 cut(s) 393, 419
BsrGI TGTACA 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 3 cut(s) 46, 354, 487
Bst2UI CCWGG 2 cut(s) 289, 359
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 20, 77, 451
BstKTI GATC 3 cut(s) 49, 357, 490
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 46, 354, 487
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 289, 359
BstSCI CCNGG 3 cut(s) 179, 287, 357
BstV1I GCAGC 2 cut(s) 52, 218
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 3 cut(s) 20, 77, 451
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 287
Csp6I GTAC 2 cut(s) 51, 131
CviJI RGCY 8 cut(s) 65, 100, 136, 173, 184, 248, 314, 493
CviKI_1 RGCY 8 cut(s) 65, 100, 136, 173, 184, 248, 314, 493
CviQI GTAC 2 cut(s) 51, 131
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 48, 356, 489
DpnII GATC 3 cut(s) 46, 354, 487
Eco47I GGWCC 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 287, 357
FaiI YATR 6 cut(s) 282, 311, 413, 437, 457, 459
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 66, 207
FokI GGATG 3 cut(s) 7, 64, 458
Fsp4HI GCNGC 2 cut(s) 66, 207
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 66, 207
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 55, 165, 190
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 46, 155, 189, 256, 345
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 121, 206, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 378
Kzo9I GATC 3 cut(s) 46, 354, 487
LmnI GCTCC 2 cut(s) 178, 319
LpnPI CCDG 9 cut(s) 141, 194, 210, 230, 274, 301, 344, 371, 401
Lsp1109I GCAGC 2 cut(s) 52, 218
LweI GCATC 2 cut(s) 29, 159
MabI ACCWGGT 1 cut(s) 287
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 48, 356, 489
MbiI CCGCTC 1 cut(s) 42
MboI GATC 3 cut(s) 46, 354, 487
MboII GAAGA 6 cut(s) 24, 66, 96, 105, 168, 185
MflI RGATCY 1 cut(s) 354
MluCI AATT 4 cut(s) 27, 305, 369, 504
MlyI GAGTC 2 cut(s) 49, 174
MnlI CCTC 7 cut(s) 91, 187, 195, 229, 238, 332, 463
MseI TTAA 2 cut(s) 441, 525
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 181, 289, 359
MvaI CCWGG 2 cut(s) 289, 359
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 457
NdeII GATC 3 cut(s) 46, 354, 487
NlaIV GGNNCC 2 cut(s) 174, 315
NmeAIII GCCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PfeI GAWTC 1 cut(s) 190
Pfl23II CGTACG 1 cut(s) 50
PkrI GCNGC 2 cut(s) 67, 208
PleI GAGTC 2 cut(s) 49, 173
PpsI GAGTC 2 cut(s) 49, 173
Psp6I CCWGG 2 cut(s) 287, 357
PspGI CCWGG 2 cut(s) 287, 357
PspLI CGTACG 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 174, 315
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 2 cut(s) 52, 132
RsaNI GTAC 2 cut(s) 51, 131
SaqAI TTAA 2 cut(s) 441, 525
SatI GCNGC 2 cut(s) 66, 207
Sau3AI GATC 3 cut(s) 46, 354, 487
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 49, 174
ScrFI CCNGG 3 cut(s) 181, 289, 359
SetI ASST 7 cut(s) 67, 102, 138, 265, 290, 363, 495
SexAI ACCWGGT 1 cut(s) 287
SfaNI GCATC 2 cut(s) 29, 159
SinI GGWCC 1 cut(s) 296
Sse9I AATT 4 cut(s) 27, 305, 369, 504
SsiI CCGC 3 cut(s) 5, 40, 463
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 179, 287, 357
TaqI TCGA 3 cut(s) 58, 139, 498
TasI AATT 4 cut(s) 27, 305, 369, 504
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 441, 525
Tru9I TTAA 2 cut(s) 441, 525
TscAI CASTG 1 cut(s) 382
TseI GCWGC 2 cut(s) 65, 206
TspDTI ATGAA 3 cut(s) 66, 96, 342
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 296
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.