Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000447.1

Orthogroup ID

OG0015473

Physical Location & Seq

Genomic Coordinates Reverse (-)

79648 .. 83549

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000447.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgggtgcagtggaggcgcttggcagtcgctgggtagcagggcagtcgctggaggctgttgcatcgtcaattccttctctctgctctgaccgcaccactcgcctggcttcttcatcctcgaatctatcttcctcttcttctctgcaattccccctacacctccgacgccttcggattccaacatatggagtctccgctccttctcggcctcgaattcttcctccggttgaagcaaagaagcaaacattttccaactttgacgatttgctggctaattctgatagacctgtcctggttgacttctatgcgacttggtgtggtccttgtcaatttatggctcctatcctcaatgaagtcagtattactctgaatgacaagatccaggtggtgaaaattgacactgagaaataccccagcattgctgacaagtatggaatacaggcattgcctactttcattatatttaaggatggaaaaccatatgaccgctttgagggtgctttgaatgctgatcagcttatcgaacgaattgaaactgctttgaaagtgaagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

185

Amino Acids

20.41

Weight (kDa)

8.43

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76760
fragaria_vesca	FvH4_2g13460
malus_domestica	MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica	Prupe.8G033500_v2.0.a1
pyrus_communis	pycom10g01850
rosa_chinensis	RchiOBHm_Chr6g0275081
rosa_laevigata	RLG00000013499
rosa_multiflora	Rmu_sc0000447.1_g000014
rosa_roxburghii	Rroxscaffold_7G00193680
rosa_rugosa	Rorug06G0088000
rosa_samantha	Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana	Rw6G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	3 cut(s)	91, 195, 487
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	185, 493
AgsI	TTSAA	4 cut(s)	230, 505, 533, 544
AjnI	CCWGG	3 cut(s)	102, 291, 381
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	373
AlwNI	CAGNNNCTG	2 cut(s)	30, 49
AoxI	GGCC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	320
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	3 cut(s)	104, 293, 383
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	20
Bme1390I	CCNGG	3 cut(s)	104, 293, 383
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	104, 293, 383
BmsI	GCATC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 493
Bse3DI	GCAATG	2 cut(s)	417, 443
BseBI	CCWGG	3 cut(s)	104, 293, 383
BseGI	GGATG	2 cut(s)	113, 475
BseLI	CCNNNNNNNGG	2 cut(s)	185, 493
BseMI	GCAATG	2 cut(s)	417, 443
BseMII	CTCAG	1 cut(s)	393
BseYI	CCCAGC	2 cut(s)	30, 413
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	185, 493
BsmAI	GTCTC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	378, 511
BspACI	CCGC	3 cut(s)	91, 195, 487
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	417, 443
BssMI	GATC	2 cut(s)	378, 511
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	104, 293, 383
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	113, 475
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	381, 514
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	378, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 90, 99, 506
BstNI	CCWGG	3 cut(s)	104, 293, 383
BstSCI	CCNGG	3 cut(s)	102, 291, 381
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	113, 475
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 399
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	30, 49
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	174
CviJI	RGCY	6 cut(s)	56, 107, 208, 272, 338, 517
CviKI_1	RGCY	6 cut(s)	56, 107, 208, 272, 338, 517
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	380, 513
DpnII	GATC	2 cut(s)	378, 511
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	102, 291, 381
FaiI	YATR	8 cut(s)	184, 186, 306, 335, 432, 461, 481, 483
FauNDI	CATATG	2 cut(s)	184, 481
FbaI	TGATCA	1 cut(s)	511
FokI	GGATG	2 cut(s)	100, 482
GlaI	GCGC	1 cut(s)	18
GsaI	CCCAGC	2 cut(s)	34, 417
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	121, 175, 189
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	5 cut(s)	88, 164, 174, 280, 369
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	3 cut(s)	84, 179, 210
HpyCH4V	TGCA	3 cut(s)	8, 62, 145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 90, 99, 506
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	166
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	378, 511
LmnI	GCTCC	2 cut(s)	202, 343
LweI	GCATC	1 cut(s)	71
MalI	GATC	2 cut(s)	380, 513
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	378, 511
MboII	GAAGA	5 cut(s)	102, 120, 126, 129, 209
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	7 cut(s)	69, 146, 213, 274, 329, 393, 528
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	3 cut(s)	187, 203, 276
MnlI	CCTC	9 cut(s)	7, 46, 127, 142, 170, 219, 231, 356, 487
MseI	TTAA	1 cut(s)	465
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	3 cut(s)	104, 293, 383
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	104, 293, 383
MwoI	GCNNNNNNNGC	4 cut(s)	14, 90, 99, 506
NdeI	CATATG	2 cut(s)	184, 481
NdeII	GATC	2 cut(s)	378, 511
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	184
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	121, 175
PflMI	CCANNNNNTGG	1 cut(s)	185
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	102, 291, 381
PspFI	CCCAGC	2 cut(s)	30, 413
PspGI	CCWGG	3 cut(s)	102, 291, 381
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	320
PstNI	CAGNNNCTG	2 cut(s)	30, 49
PsuI	RGATCY	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	378, 511
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	3 cut(s)	104, 293, 383
SetI	ASST	4 cut(s)	162, 289, 387, 519
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	7 cut(s)	69, 146, 213, 274, 329, 393, 528
SsiI	CCGC	3 cut(s)	91, 195, 487
StyD4I	CCNGG	3 cut(s)	102, 291, 381
TaqI	TCGA	3 cut(s)	119, 211, 522
TasI	AATT	7 cut(s)	69, 146, 213, 274, 329, 393, 528
TfiI	GAWTC	2 cut(s)	121, 175
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	15, 406
TspDTI	ATGAA	3 cut(s)	102, 366, 445
TspRI	CASTG	2 cut(s)	15, 406
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.