Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015473

Physical Location & Seq

Genomic Coordinates Forward (+)

4528713 .. 4532126

Gene Structure 3414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1027800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGGTTTCCGTGACGGCGTCCACGATTCCTTCTCTCAGCTCTGACCGTACGACTCGCTTAGCTGCGGCGGCGGCCTCATCCTCCTCCTCTTCTTCTTGTTCAAAGCTGTCTTCCTCTACTTCTCTGCGATTTCCGGCGCAGCTTCGACGTGTTCGGATCGGAACTCAGGACTCACGGCCTCGGCTTCTTCCTCCGGTTGAAGCAAAGAAGCAAACATTTTCATCCTTCCAAGATTTGCTGGCTACCTCTGAAAAACCTGTGTTGGTTGACTTCTATGCAACCTGGTGTGGACCTTGTCAATTTATGGCACCCATCCTCAATGAAGTCAGTATTACGCTGAATGACAAGATCCAGGTTGTGAAAATTGACACAGAGAAGTATCCTAGCATTGCTGATAAATATAACATACAAGCATTGCCTACTTTCATCATATTTAAGGATGGAGAGCCATTTGACCGCTTTGAGGGTGCTATGACTGCTGATCAGCTTGTCGAACGAATAGAAACTACTTTGAAACTTCTCAGGTTGAACCGAGAAGCTGATCGATTCAGCCGCATTGCAAGAAAAATGGATTTTATGAAGAAAGGCACTGGATGTTTCCTCTGCTTTTTTATTTTTTGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

210

Amino Acids

23.35

Weight (kDa)

9.21

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	72 - 169	7.4e-30	Thioredoxin
Thioredoxin_2	PF13098	83 - 166	1.9e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76760
fragaria_vesca	FvH4_2g13460
malus_domestica	MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica	Prupe.8G033500_v2.0.a1
pyrus_communis	pycom10g01850
rosa_chinensis	RchiOBHm_Chr6g0275081
rosa_laevigata	RLG00000013499
rosa_multiflora	Rmu_sc0000447.1_g000014
rosa_roxburghii	Rroxscaffold_7G00193680
rosa_rugosa	Rorug06G0088000
rosa_samantha	Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana	Rw6G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	6 cut(s)	5, 68, 71, 74, 460, 556
AclWI	GGATC	2 cut(s)	167, 346
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	105, 203, 517, 532
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	284, 354
AluBI	AGCT	6 cut(s)	42, 65, 109, 145, 490, 542
AluI	AGCT	6 cut(s)	42, 65, 109, 145, 490, 542
AlwI	GGATC	2 cut(s)	167, 346
AoxI	GGCC	2 cut(s)	75, 179
ApeKI	GCWGC	2 cut(s)	65, 142
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	52, 154
BccI	CCATC	2 cut(s)	323, 437
BceAI	ACGGC	2 cut(s)	33, 194
BciT130I	CCWGG	2 cut(s)	286, 356
BciVI	GTATCC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	484
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	6 cut(s)	66, 69, 72, 75, 143, 556
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	6 cut(s)	67, 70, 73, 76, 144, 557
Bme1390I	CCNGG	2 cut(s)	286, 356
Bme18I	GGWCC	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	286, 356
BpiI	GAAGAC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	3 cut(s)	390, 416, 558
BseBI	CCWGG	2 cut(s)	286, 356
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	5 cut(s)	80, 224, 315, 448, 602
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	3 cut(s)	390, 416, 558
BseMII	CTCAG	3 cut(s)	52, 182, 538
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	2 cut(s)	52, 154
BshFI	GGCC	2 cut(s)	77, 181
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	137, 197
BsiWI	CGTACG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	466
BsnI	GGCC	2 cut(s)	77, 181
Bsp143I	GATC	4 cut(s)	159, 351, 484, 544
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	6 cut(s)	5, 68, 71, 74, 460, 556
BspANI	GGCC	2 cut(s)	77, 181
BspCNI	CTCAG	3 cut(s)	51, 181, 537
BspDI	ATCGAT	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	167, 346
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	3 cut(s)	390, 416, 558
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	4 cut(s)	159, 351, 484, 544
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	286, 356
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	38, 61, 168, 524
BstF5I	GGATG	5 cut(s)	80, 224, 315, 448, 602
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	162, 354, 487, 547
BstMBI	GATC	4 cut(s)	159, 351, 484, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 74, 479
BstNI	CCWGG	2 cut(s)	286, 356
BstSCI	CCNGG	2 cut(s)	284, 354
BstV1I	GCAGC	2 cut(s)	52, 154
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	77, 181
BsuTUI	ATCGAT	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	5 cut(s)	80, 224, 315, 448, 602
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	547
CseI	GACGC	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	51
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	4 cut(s)	38, 61, 168, 524
DpnI	GATC	4 cut(s)	161, 353, 486, 546
DpnII	GATC	4 cut(s)	159, 351, 484, 544
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	284, 354
FaiI	YATR	8 cut(s)	279, 308, 405, 410, 434, 476, 581, 626
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	6 cut(s)	66, 69, 72, 75, 143, 556
FokI	GGATG	5 cut(s)	67, 211, 302, 455, 609
Fsp4HI	GCNGC	6 cut(s)	66, 69, 72, 75, 143, 556
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	6 cut(s)	66, 69, 72, 75, 143, 556
HaeIII	GGCC	2 cut(s)	77, 181
HapII	CCGG	2 cut(s)	137, 197
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	28, 55, 173, 549
HpaII	CCGG	2 cut(s)	137, 197
Hpy166II	GTNNAC	3 cut(s)	24, 271, 293
Hpy188I	TCNGA	4 cut(s)	46, 159, 164, 253
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	3 cut(s)	24, 271, 293
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	2 cut(s)	42, 238
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	281, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 74, 479
HpyF3I	CTNAG	4 cut(s)	38, 61, 168, 524
HpySE526I	ACGT	1 cut(s)	151
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	159, 351, 484, 544
Lsp1109I	GCAGC	2 cut(s)	52, 154
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	4 cut(s)	161, 353, 486, 546
MboI	GATC	4 cut(s)	159, 351, 484, 544
MboII	GAAGA	5 cut(s)	84, 87, 105, 182, 595
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	2 cut(s)	302, 366
MlyI	GAGTC	2 cut(s)	49, 167
MseI	TTAA	1 cut(s)	438
MspI	CCGG	2 cut(s)	137, 197
MspR9I	CCNGG	2 cut(s)	286, 356
MvaI	CCWGG	2 cut(s)	286, 356
MwoI	GCNNNNNNNGC	3 cut(s)	71, 74, 479
NdeII	GATC	4 cut(s)	159, 351, 484, 544
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	28, 549
Pfl23II	CGTACG	1 cut(s)	50
PflFI	GACNNNGTC	2 cut(s)	19, 297
PkrI	GCNGC	6 cut(s)	67, 70, 73, 76, 144, 557
PleI	GAGTC	2 cut(s)	49, 167
PpsI	GAGTC	2 cut(s)	49, 167
Psp6I	CCWGG	2 cut(s)	284, 354
PspGI	CCWGG	2 cut(s)	284, 354
PspLI	CGTACG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	351
PsyI	GACNNNGTC	2 cut(s)	19, 297
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	6 cut(s)	66, 69, 72, 75, 143, 556
Sau3AI	GATC	4 cut(s)	159, 351, 484, 544
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	49, 167
ScrFI	CCNGG	2 cut(s)	286, 356
SexAI	ACCWGGT	1 cut(s)	284
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	302, 366
SsiI	CCGC	6 cut(s)	5, 68, 71, 74, 460, 556
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	284, 354
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	148, 495, 547
TasI	AATT	2 cut(s)	302, 366
TauI	GCSGC	4 cut(s)	71, 74, 77, 558
TfiI	GAWTC	2 cut(s)	28, 549
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	65, 142
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	213, 339, 418, 596
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	2 cut(s)	19, 297
VpaK11BI	GGWCC	1 cut(s)	293
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.