Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Forward (+)

13204691 .. 13206757

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATGATTATGGAGCTTCTCCTGCTGGCTCTGCAGATGAGTCAAAGTCGACGTCTTGCCCAAGAGGACACTGGAGGCCCGCAGAAGATGAAAGACTCCGGCAACTCGTCGAACAGTACGGTGCCCAGAACTGGAACTCCATAGCAGAAAAGCTTCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTTAATCAACTAGACCCAAGAATCAACAGAAGGCCGTTTAGTGAAGAAGAAGAAGAGAGGCTTCTAGCGGCTCATCGGATTCACGGAAACAAGTGGGCAATGATAGCAAGACTGTTTCCAGGTCGGACTGATAACGCCGTAAAGAATCACTGGCATGTTATCATGGCCAGAAGGCAAAGAGAGCAATCTAAGTTAATTTGTGGGAGCAAGAGAAGCTACCAAGATTTCTTAATCTCTAATGACTCTCTATCGAACACTTCCTCATCAATTTCCAACGCTTTTGATTTGAGGATATTGAAATCATCAACTGGGTTTGATCACAATCAGAGTAGTTCTACTACTAGTACTGTGTTTGAATTCAGGAACCCTGGTAAAGGTAGGGCAATGTCGTTCATGGAATCGTCAAGGCCTAAAAGCTCTTCTTGTCATAATTGGAACTTTGCTTCAATGACAAGTTCATTATCAAATCCCAACTCGACATCTTCATCAGGCTTCTTGAGAGGATCAGAAATATCTAATTACAGAGTTTCGGAGTGCTTCAAGGGTGGTAATTCGGATCATCGTTTTGTTCCTCGAATTAATGGGCAATATTCAAGTCCAGCATTCGTGTATGGCAGGTATAGAGGTTCCGGCAGCAGCAGTAGTACTTTTGGGCTTCCAAATCCCAGAAGGGTTAATGTTCCAATCAATCATTTCGGGTGCCTCAGTAGTAGTACTAGTCCTCTTGGAGATATTCATGAGAAGCATGGAAGCAAGATGATATTGAAGAAAGAGTACCAGAGGGCTGCATCAGCTACTACATTTGAAGACCATCCTCATCATCATCACGATTCATCCATCGAGCATAACAAGGAAGTTCCCTTCATAGATTTTCTTGGTGTGGGGATCTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

363

Amino Acids

40.64

Weight (kDa)

9.54

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 68	6.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 85	4.8e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 116	5.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	77 - 125	6.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	798
AccB1I	GGYRCC	2 cut(s)	122, 891
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	81, 260
AclWI	GGATC	3 cut(s)	703, 756, 1085
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	5 cut(s)	119, 538, 838, 907, 968
AfiI	CCNNNNNNNGG	2 cut(s)	132, 566
AgsI	TTSAA	8 cut(s)	158, 490, 548, 639, 733, 786, 958, 998
AhlI	ACTAGT	2 cut(s)	533, 908
AjnI	CCWGG	2 cut(s)	310, 559
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	6 cut(s)	17, 154, 408, 609, 986, 1086
AluI	AGCT	6 cut(s)	17, 154, 408, 609, 986, 1086
AlwI	GGATC	3 cut(s)	703, 756, 1085
AoxI	GGCC	4 cut(s)	77, 224, 357, 599
ApeKI	GCWGC	3 cut(s)	825, 828, 977
ApoI	RAATTY	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	122, 891
BarI	GAAGNNNNNNTAC	2 cut(s)	950, 982
BbsI	GAAGAC	1 cut(s)	1005
BbvI	GCAGC	3 cut(s)	837, 840, 964
BccI	CCATC	3 cut(s)	183, 1011, 1037
BceAI	ACGGC	2 cut(s)	211, 314
BciT130I	CCWGG	2 cut(s)	312, 561
BclI	TGATCA	1 cut(s)	508
BcuI	ACTAGT	2 cut(s)	533, 908
BfaI	CTAG	6 cut(s)	203, 257, 534, 909, 1083, 1087
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	798
BisI	GCNGC	4 cut(s)	261, 826, 829, 978
BlsI	GCNGC	4 cut(s)	262, 827, 830, 979
BmcAI	AGTACT	3 cut(s)	538, 838, 907
Bme1390I	CCNGG	2 cut(s)	312, 561
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	4 cut(s)	124, 557, 820, 893
BmrFI	CCNGG	2 cut(s)	312, 561
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	989
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	1005
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 566
Bse1I	ACTGG	4 cut(s)	77, 137, 347, 505
Bse3DI	GCAATG	2 cut(s)	297, 582
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	312, 561
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	3 cut(s)	10, 1003, 1025
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	132, 566
BseMI	GCAATG	2 cut(s)	297, 582
BseMII	CTCAG	1 cut(s)	910
BseNI	ACTGG	4 cut(s)	77, 137, 347, 505
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	837, 840, 964
BshFI	GGCC	4 cut(s)	79, 226, 359, 601
BshNI	GGYRCC	2 cut(s)	122, 891
BsiSI	CCGG	2 cut(s)	100, 822
BslI	CCNNNNNNNGG	2 cut(s)	132, 566
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	4 cut(s)	79, 226, 359, 601
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	164, 508, 695, 748, 1077
BspACI	CCGC	2 cut(s)	81, 260
BspANI	GGCC	4 cut(s)	79, 226, 359, 601
BspCNI	CTCAG	1 cut(s)	909
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	4 cut(s)	124, 557, 820, 893
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	3 cut(s)	703, 756, 1085
BspQI	GCTCTTC	1 cut(s)	616
BspT107I	GGYRCC	2 cut(s)	122, 891
BsrDI	GCAATG	2 cut(s)	297, 582
BsrI	ACTGG	4 cut(s)	77, 137, 347, 505
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	5 cut(s)	164, 508, 695, 748, 1077
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	312, 561
Bst4CI	ACNGT	4 cut(s)	117, 122, 306, 541
Bst6I	CTCTTC	2 cut(s)	240, 616
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	28, 81
BstDEI	CTNAG	2 cut(s)	381, 896
BstENI	CCTNNNNNAGG	1 cut(s)	564
BstF5I	GGATG	3 cut(s)	10, 1003, 1025
BstKTI	GATC	5 cut(s)	167, 511, 698, 751, 1080
BstMBI	GATC	5 cut(s)	164, 508, 695, 748, 1077
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 32, 296, 373, 405, 983
BstNI	CCWGG	2 cut(s)	312, 561
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	310, 559
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	837, 840, 964
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	1 cut(s)	1077
BstYI	RGATCY	1 cut(s)	1077
BsuRI	GGCC	4 cut(s)	79, 226, 359, 601
BtsCI	GGATG	3 cut(s)	10, 1003, 1025
BtsIMutI	CAGTG	2 cut(s)	70, 340
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	2 cut(s)	28, 81
CciI	TCATGA	1 cut(s)	928
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	118, 537, 837, 906, 967
CviAII	CATG	5 cut(s)	347, 355, 586, 929, 938
CviQI	GTAC	5 cut(s)	118, 537, 837, 906, 967
DdeI	CTNAG	2 cut(s)	381, 896
DpnI	GATC	5 cut(s)	166, 510, 697, 750, 1079
DpnII	GATC	5 cut(s)	164, 508, 695, 748, 1077
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	240, 616
EarI	CTCTTC	2 cut(s)	240, 616
Eco147I	AGGCCT	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	310, 559
FaeI	CATG	5 cut(s)	350, 358, 589, 932, 941
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 598, 630
FatI	CATG	5 cut(s)	346, 354, 585, 928, 937
FauI	CCCGC	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	4 cut(s)	261, 826, 829, 978
FokI	GGATG	3 cut(s)	17, 990, 1012
Fsp4HI	GCNGC	4 cut(s)	261, 826, 829, 978
FspBI	CTAG	6 cut(s)	203, 257, 534, 909, 1083, 1087
GluI	GCNGC	4 cut(s)	261, 826, 829, 978
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	79, 226, 359, 601
HapII	CCGG	2 cut(s)	100, 822
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	350, 358, 589, 932, 941
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	8 cut(s)	41, 96, 213, 271, 337, 434, 590, 1022
HpaII	CCGG	2 cut(s)	100, 822
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	6 cut(s)	270, 318, 519, 700, 724, 748
Hpy188III	TCNNGA	4 cut(s)	553, 688, 929, 1019
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	55, 113
HpyAV	CCTTC	4 cut(s)	216, 357, 855, 1063
HpyCH4III	ACNGT	4 cut(s)	117, 122, 306, 541
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	35, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 32, 296, 373, 405, 983
HpyF3I	CTNAG	2 cut(s)	381, 896
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	350, 358, 589, 932, 941
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	164, 508, 695, 748, 1077
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	14, 396
Lsp1109I	GCAGC	3 cut(s)	837, 840, 964
LweI	GCATC	1 cut(s)	989
MaeI	CTAG	6 cut(s)	203, 257, 534, 909, 1083, 1087
MaeII	ACGT	1 cut(s)	53
MalI	GATC	5 cut(s)	166, 510, 697, 750, 1079
MboI	GATC	5 cut(s)	164, 508, 695, 748, 1077
MflI	RGATCY	1 cut(s)	1077
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	7 cut(s)	387, 459, 548, 622, 709, 742, 768
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	50, 90, 428
MmeI	TCCRAC	2 cut(s)	296, 489
Mox20I	TGGCCA	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	5 cut(s)	195, 386, 422, 771, 867
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	2 cut(s)	100, 822
MspR9I	CCNGG	2 cut(s)	312, 561
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	312, 561
MwoI	GCNNNNNNNGC	6 cut(s)	23, 32, 296, 373, 405, 983
NdeII	GATC	5 cut(s)	164, 508, 695, 748, 1077
NlaIII	CATG	5 cut(s)	350, 358, 589, 932, 941
NlaIV	GGNNCC	4 cut(s)	124, 557, 820, 893
NspI	RCATGY	1 cut(s)	350
PagI	TCATGA	1 cut(s)	928
PceI	AGGCCT	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	616
PctI	GAATGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	5 cut(s)	213, 271, 337, 590, 1022
PkrI	GCNGC	4 cut(s)	262, 827, 830, 979
PleI	GAGTC	3 cut(s)	49, 90, 428
PpsI	GAGTC	3 cut(s)	49, 90, 428
PshBI	ATTAAT	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	310, 559
PspGI	CCWGG	2 cut(s)	310, 559
PspN4I	GGNNCC	4 cut(s)	124, 557, 820, 893
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	1077
RsaI	GTAC	5 cut(s)	119, 538, 838, 907, 968
RsaNI	GTAC	5 cut(s)	118, 537, 837, 906, 967
RseI	CAYNNNNRTG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	5 cut(s)	195, 386, 422, 771, 867
SatI	GCNGC	4 cut(s)	261, 826, 829, 978
Sau3AI	GATC	5 cut(s)	164, 508, 695, 748, 1077
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	3 cut(s)	538, 838, 907
SchI	GAGTC	3 cut(s)	50, 90, 428
ScrFI	CCNGG	2 cut(s)	312, 561
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	989
SfcI	CTRYAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
SpeI	ACTAGT	2 cut(s)	533, 908
Sse9I	AATT	7 cut(s)	387, 459, 548, 622, 709, 742, 768
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	2 cut(s)	81, 260
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	6 cut(s)	203, 257, 534, 909, 1083, 1087
StuI	AGGCCT	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	310, 559
TaaI	ACNGT	4 cut(s)	117, 122, 306, 541
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	6 cut(s)	50, 111, 443, 668, 766, 1032
TasI	AATT	7 cut(s)	387, 459, 548, 622, 709, 742, 768
TatI	WGTACW	3 cut(s)	536, 836, 905
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	213, 271, 337, 590, 1022
Tru1I	TTAA	5 cut(s)	195, 386, 422, 771, 867
Tru9I	TTAA	5 cut(s)	195, 386, 422, 771, 867
TscAI	CASTG	2 cut(s)	77, 347
TseI	GCWGC	3 cut(s)	825, 828, 977
TspDTI	ATGAA	7 cut(s)	105, 574, 639, 666, 917, 1014, 1045
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	77, 347
VspI	ATTAAT	1 cut(s)	771
XagI	CCTNNNNNAGG	1 cut(s)	564
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	6 cut(s)	203, 257, 534, 909, 1083, 1087
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	3 cut(s)	538, 838, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.