Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

2253534 .. 2255281

Gene Structure 1748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1011100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGGATTATGGGGATGAAGCAAAGAGTACAGGTTGCCCACGTGGACATTGGAGGCCTGCCGAGGATGAAAAACTCCGGCAACTTGTCGAGCAATACGGTGCACAGAACTGGAACTCTATTGCTGAGAAGCTTCAAGGAAGATCAGGAAAGAGTTGTAGATTGAGGTGGTTTAATCAGCTAGACCCGAGAATCAACCGAAGGCCGTTCAGCGAGGAAGAGGAAGAGAGGCTTCTGGCAGCACATCGCATTCATGGAAACAAGTGGGCGCTGATAGCAAGGCTTTTTCCCGGTCGGACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCAAGAAGGCAAAGAGAACAGTCCAAAGTTTGTGGGAAGAAAAGTTTCCAAGATTTCTTTAACGATCACTCACCAAATTCCTCCTCAATTTCCAACAATTTTGATGCAAGCAGGAAATTAAGATCCCAAGGATCATCAATCGGGTTTGGTCGGAATAATATTAGTACTAAGTTCCTTGAATTCCAAAACCCGAATAAAGATAGGGCAATGTTCATGGATTCAAGGCCTACTAGCTCCTTTCCTTATAATTGGAACTTTGCTTCAATGTCAACAACATCAAACAACTCATCTTCAGTGGATTTATTGGGAAGAGAAAGAAGAGATTACATCAACAATGGTAGTTCTAATTATACGATTTCTGAGCTCTCGAAAGGTTCGCATCCTCAACTCGTTCATCGTAGACATAATCCGACTTCCTCATTCCTGTATGGTTGCTATAGGGGTTCTTCTAGTAATGCATTTGGGCGTCCAACTTACAGTAGCCCTTTTGGGTGCCCCAGTAATCATGCCGACCGTCTTATTAATCGTCAGGATCAACACGGAAGTACGTTCAAGGAAGTGTTGCCTAATCTTTATGAGAATGCATCAACGTTGCCAAAGTGGAGGGTTGCAGCTACAACTACTAAATTTGATGACCATGATCCTCAAGATCACGTGTCTATCGATCATCACAAGGAAACTCCCTTCATAGATTTTCTTGGTGTGGGGATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

40.18

Weight (kDa)

9.41

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 61	3.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	2.3e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 109	7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	332, 582
AccB1I	GGYRCC	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	736
AclI	AACGTT	1 cut(s)	926
AclWI	GGATC	5 cut(s)	453, 475, 876, 971, 1052
AcsI	RAATTY	3 cut(s)	412, 515, 962
AcuI	CTGAAG	1 cut(s)	612
AcvI	CACGTG	2 cut(s)	44, 991
AcyI	GRCGYC	1 cut(s)	802
AfaI	GTAC	3 cut(s)	31, 502, 883
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	137, 515, 558, 600, 889
AluBI	AGCT	5 cut(s)	133, 181, 570, 700, 950
AluI	AGCT	5 cut(s)	133, 181, 570, 700, 950
Alw21I	GWGCWC	2 cut(s)	106, 702
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	5 cut(s)	453, 475, 876, 971, 1052
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	56, 203, 560
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	239, 947
ApoI	RAATTY	3 cut(s)	412, 515, 962
AseI	ATTAAT	1 cut(s)	858
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	187
BaeGI	GKGCMC	2 cut(s)	106, 833
BanI	GGYRCC	1 cut(s)	828
BanII	GRGCYC	1 cut(s)	702
BbrPI	CACGTG	2 cut(s)	44, 991
Bbv12I	GWGCWC	2 cut(s)	106, 702
BbvI	GCAGC	2 cut(s)	251, 959
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	3 cut(s)	182, 567, 786
BfmI	CTRYAG	1 cut(s)	772
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	2 cut(s)	240, 948
BlsI	GCNGC	2 cut(s)	241, 949
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	3 cut(s)	430, 724, 929
BmuI	ACTGGG	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	966
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	999
BsaAI	YACGTR	2 cut(s)	44, 991
BsaHI	GRCGYC	1 cut(s)	802
BsaJI	CCNNGG	2 cut(s)	63, 463
Bse1I	ACTGG	2 cut(s)	116, 834
Bse3DI	GCAATG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	999
BseDI	CCNNGG	2 cut(s)	63, 463
BseGI	GGATG	3 cut(s)	22, 73, 715
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	117, 687
BseNI	ACTGG	2 cut(s)	116, 834
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	2 cut(s)	106, 833
BseXI	GCAGC	2 cut(s)	251, 959
Bsh1285I	CGRYCG	2 cut(s)	295, 850
BshFI	GGCC	3 cut(s)	58, 205, 562
BshNI	GGYRCC	1 cut(s)	828
BshVI	ATCGAT	1 cut(s)	999
BsiEI	CGRYCG	2 cut(s)	295, 850
BsiHKAI	GWGCWC	2 cut(s)	106, 702
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	79, 291
BsmI	GAATGC	2 cut(s)	249, 922
BsnI	GGCC	3 cut(s)	58, 205, 562
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	106, 702, 833
Bsp143I	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
BspANI	GGCC	3 cut(s)	58, 205, 562
BspCNI	CTCAG	2 cut(s)	118, 688
BspDI	ATCGAT	1 cut(s)	999
BspLI	GGNNCC	1 cut(s)	830
BspPI	GGATC	5 cut(s)	453, 475, 876, 971, 1052
BspT107I	GGYRCC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	116, 834
BssECI	CCNNGG	2 cut(s)	63, 463
BssMI	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
BssNI	GRCGYC	1 cut(s)	802
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	4 cut(s)	101, 357, 815, 851
Bst6I	CTCTTC	4 cut(s)	213, 219, 640, 649
BstACI	GRCGYC	1 cut(s)	802
BstBAI	YACGTR	2 cut(s)	44, 991
BstC8I	GCNNGC	2 cut(s)	60, 445
BstDEI	CTNAG	3 cut(s)	126, 504, 696
BstF5I	GGATG	3 cut(s)	22, 73, 715
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	9 cut(s)	146, 403, 461, 470, 871, 979, 988, 1003, 1047
BstMBI	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
BstMCI	CGRYCG	2 cut(s)	295, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	772
BstSLI	GKGCMC	2 cut(s)	106, 833
BstV1I	GCAGC	2 cut(s)	251, 959
BstX2I	RGATCY	2 cut(s)	458, 1044
BstYI	RGATCY	2 cut(s)	458, 1044
Bsu15I	ATCGAT	1 cut(s)	999
BsuRI	GGCC	3 cut(s)	58, 205, 562
BsuTUI	ATCGAT	1 cut(s)	999
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	22, 73, 715
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	60, 445
CfoI	GCGC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	999
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	30, 501, 882
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	254, 326, 550, 842, 974
CviQI	GTAC	3 cut(s)	30, 501, 882
DdeI	CTNAG	3 cut(s)	126, 504, 696
DpnI	GATC	9 cut(s)	145, 402, 460, 469, 870, 978, 987, 1002, 1046
DpnII	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
Eam1104I	CTCTTC	4 cut(s)	213, 219, 640, 649
EarI	CTCTTC	4 cut(s)	213, 219, 640, 649
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	463
Eco147I	AGGCCT	2 cut(s)	58, 562
Eco24I	GRGCYC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	612
Eco72I	CACGTG	2 cut(s)	44, 991
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	2 cut(s)	796, 922
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	5 cut(s)	257, 329, 553, 845, 977
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	5 cut(s)	253, 325, 549, 841, 973
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	240, 948
FokI	GGATG	3 cut(s)	29, 80, 702
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	2 cut(s)	240, 948
FspBI	CTAG	3 cut(s)	182, 567, 786
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	240, 948
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	58, 205, 562
HapII	CCGG	2 cut(s)	79, 291
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	5 cut(s)	257, 329, 553, 845, 977
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	192, 316, 554
HpaII	CCGG	2 cut(s)	79, 291
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	4 cut(s)	47, 104, 606, 737
Hpy188I	TCNGA	4 cut(s)	297, 489, 697, 747
Hpy188III	TCNNGA	4 cut(s)	147, 703, 866, 983
Hpy8I	GTNNAC	4 cut(s)	47, 104, 606, 737
HpyAV	CCTTC	3 cut(s)	195, 336, 1030
HpyCH4III	ACNGT	4 cut(s)	101, 357, 815, 851
HpyCH4IV	ACGT	4 cut(s)	43, 884, 926, 990
HpyCH4V	TGCA	5 cut(s)	104, 443, 794, 920, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	126, 504, 696
HpySE526I	ACGT	4 cut(s)	43, 884, 926, 990
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	5 cut(s)	257, 329, 553, 845, 977
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	251, 959
LweI	GCATC	3 cut(s)	430, 724, 929
MaeI	CTAG	3 cut(s)	182, 567, 786
MaeII	ACGT	4 cut(s)	43, 884, 926, 990
MalI	GATC	9 cut(s)	145, 402, 460, 469, 870, 978, 987, 1002, 1046
MboI	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
MflI	RGATCY	2 cut(s)	458, 1044
MhlI	GDGCHC	3 cut(s)	106, 702, 833
MluCI	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 682, 962
MmeI	TCCRAC	5 cut(s)	275, 453, 467, 770, 830
Mph1103I	ATGCAT	2 cut(s)	796, 922
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	5 cut(s)	174, 396, 455, 858, 1054
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	79, 291
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	249, 922
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
NlaIII	CATG	5 cut(s)	257, 329, 553, 845, 977
NlaIV	GGNNCC	1 cut(s)	830
NmeAIII	GCCGAG	1 cut(s)	88
NsiI	ATGCAT	2 cut(s)	796, 922
NspI	RCATGY	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	58, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	996
PctI	GAATGC	2 cut(s)	249, 922
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	192, 316, 554
PkrI	GCNGC	2 cut(s)	241, 949
PmaCI	CACGTG	2 cut(s)	44, 991
PmlI	CACGTG	2 cut(s)	44, 991
Ppu21I	YACGTR	2 cut(s)	44, 991
PshBI	ATTAAT	1 cut(s)	858
PsiI	TTATAA	2 cut(s)	332, 582
Psp124BI	GAGCTC	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	926
PspCI	CACGTG	2 cut(s)	44, 991
PspN4I	GGNNCC	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	458, 1044
RsaI	GTAC	3 cut(s)	31, 502, 883
RsaNI	GTAC	3 cut(s)	30, 501, 882
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	702
SaqAI	TTAA	5 cut(s)	174, 396, 455, 858, 1054
SatI	GCNGC	2 cut(s)	240, 948
Sau3AI	GATC	9 cut(s)	143, 400, 458, 467, 868, 976, 985, 1000, 1044
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	106, 702, 833
SfaNI	GCATC	3 cut(s)	430, 724, 929
SfcI	CTRYAG	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	981
SmoI	CTYRAG	1 cut(s)	981
Sse9I	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 682, 962
SseBI	AGGCCT	2 cut(s)	58, 562
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	182, 567, 786
SstI	GAGCTC	1 cut(s)	702
StuI	AGGCCT	2 cut(s)	58, 562
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	101, 357, 815, 851
TaiI	ACGT	4 cut(s)	46, 887, 929, 993
TaqI	TCGA	3 cut(s)	90, 704, 999
TasI	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 682, 962
TatI	WGTACW	2 cut(s)	29, 500
TfiI	GAWTC	3 cut(s)	192, 316, 554
Tru1I	TTAA	5 cut(s)	174, 396, 455, 858, 1054
Tru9I	TTAA	5 cut(s)	174, 396, 455, 858, 1054
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	2 cut(s)	239, 947
TspDTI	ATGAA	6 cut(s)	33, 84, 242, 538, 719, 1012
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	1 cut(s)	636
VneI	GTGCAC	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	3 cut(s)	412, 515, 962
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	3 cut(s)	182, 567, 786
ZrmI	AGTACT	1 cut(s)	502
Zsp2I	ATGCAT	2 cut(s)	796, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.