Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

776287 .. 777637

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGATTATGGGGATGAAGCAAAGAGTACAGGTTGCCCACGAGGACATTGGAGGCCTGCCGAGGATGAAAAACTCCGGCAACTTGTCGAGCAATACGGTGCACAGAACTGGAACTCTATTGCTGAGAAGCTTCAAGGAAGATCAGGAAAGAGTTGTAGATTGAGGTGGTTTAATCAGCTAGACCCGAGAATCAACCGAAGGCCGTTCAGCGAGGAAGAGGAAGAGAGGCTTCTGGCAGCACATCGCATTCATGGAAACAAGTGGGCGCTGATAGCAAGGCTTTTTCCCGGTCGGACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCAAGAAGGCAAAGAGAACAGTCCAAAGTTTGTGGGAAGAAAAGTTTCCAAGATTTCTTTAACGATCACTCACCAAATTCCTCCTCAATTTCTAACAATTTTGATGCAGGCAGGAAATTAAGATCTCAAGGATCATCAATCGGGTTTGGTCCGAATAATATTAGTACTAAGTTCTTTGAATTCCAAAACCTGAATAAAGATAGGGCAATGTTCATGGATTCAAGGCCTACTAGCTCCCTTCCTTATAATTGGAACTTTGCTTCAATGCCAACAACATCAAACAAGTCATCATCTTCAGTGGATTTATTGGGAAGAGAAAGAAGAGAATACATCAACAATAGTAGTTCTAATTATACGATTTCTGAGCTCTCGAAAGGTTCGCATCCTCAACTCGTTCATCGTAGACATAATCCGACTTCCTCATTCCTGTATGGTTGCTATAGAGGTTCTTCTAGTAATGCATTTGGGCGTCCAACTTACAGTAGTCCTTTTGGGTGCCCCAGTAATCTTGCCGACCATCATATTAATCGTCAGGATCAACACGGAAGTACGTTCAAGGAAGTGTTGCCTAATCTTTATGAGAATGCATCAACGTTGCCAAAGTGGAGGGTTGCAGCTACAACTACTAAATTTGATGACCATGATCGTCAAGATCACGTGTCTATCGATCATCACAAGGAAACTCCCTTCATAGATTTTCTTGGTGTGGGGATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

353

Amino Acids

40.3

Weight (kDa)

9.4

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	332, 582
AccB1I	GGYRCC	1 cut(s)	831
AccI	GTMKAC	1 cut(s)	739
AclI	AACGTT	1 cut(s)	929
AclWI	GGATC	3 cut(s)	475, 879, 1055
AcsI	RAATTY	3 cut(s)	412, 515, 965
AcuI	CTGAAG	1 cut(s)	615
AcvI	CACGTG	1 cut(s)	994
AcyI	GRCGYC	1 cut(s)	805
AfaI	GTAC	3 cut(s)	31, 502, 886
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	5 cut(s)	137, 515, 558, 600, 892
AluBI	AGCT	5 cut(s)	133, 181, 570, 703, 953
AluI	AGCT	5 cut(s)	133, 181, 570, 703, 953
Alw21I	GWGCWC	2 cut(s)	106, 705
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	475, 879, 1055
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	56, 203, 560
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	239, 950
ApoI	RAATTY	3 cut(s)	412, 515, 965
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	2 cut(s)	106, 836
BanI	GGYRCC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	705
BauI	CACGAG	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	994
Bbv12I	GWGCWC	2 cut(s)	106, 705
BbvI	GCAGC	2 cut(s)	251, 962
BccI	CCATC	1 cut(s)	861
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	3 cut(s)	182, 567, 789
BfmI	CTRYAG	1 cut(s)	775
BfoI	RGCGCY	1 cut(s)	272
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	240, 951
BlsI	GCNGC	2 cut(s)	241, 952
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	833
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	3 cut(s)	430, 727, 932
BmuI	ACTGGG	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	1002
BsaAI	YACGTR	1 cut(s)	994
BsaHI	GRCGYC	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	116, 837
Bse3DI	GCAATG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	22, 73, 718
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	117, 690
BseNI	ACTGG	2 cut(s)	116, 837
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	2 cut(s)	106, 836
BseXI	GCAGC	2 cut(s)	251, 962
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	58, 205, 562
BshNI	GGYRCC	1 cut(s)	831
BshVI	ATCGAT	1 cut(s)	1002
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	106, 705
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	79, 291
BsmI	GAATGC	2 cut(s)	249, 925
BsnI	GGCC	3 cut(s)	58, 205, 562
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	106, 705, 836
Bsp143I	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
BspANI	GGCC	3 cut(s)	58, 205, 562
BspCNI	CTCAG	2 cut(s)	118, 691
BspDI	ATCGAT	1 cut(s)	1002
BspLI	GGNNCC	1 cut(s)	833
BspPI	GGATC	3 cut(s)	475, 879, 1055
BspT107I	GGYRCC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	116, 837
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
BssNI	GRCGYC	1 cut(s)	805
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	101, 357, 818
Bst6I	CTCTTC	4 cut(s)	213, 219, 643, 652
BstACI	GRCGYC	1 cut(s)	805
BstBAI	YACGTR	1 cut(s)	994
BstC8I	GCNNGC	2 cut(s)	60, 445
BstDEI	CTNAG	3 cut(s)	126, 504, 699
BstF5I	GGATG	3 cut(s)	22, 73, 718
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	9 cut(s)	146, 403, 461, 470, 874, 982, 991, 1006, 1050
BstMBI	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	2 cut(s)	106, 836
BstV1I	GCAGC	2 cut(s)	251, 962
BstX2I	RGATCY	2 cut(s)	458, 1047
BstYI	RGATCY	2 cut(s)	458, 1047
Bsu15I	ATCGAT	1 cut(s)	1002
BsuRI	GGCC	3 cut(s)	58, 205, 562
BsuTUI	ATCGAT	1 cut(s)	1002
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	22, 73, 718
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	60, 445
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	1002
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	30, 501, 885
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	4 cut(s)	254, 326, 550, 977
CviQI	GTAC	3 cut(s)	30, 501, 885
DdeI	CTNAG	3 cut(s)	126, 504, 699
DpnI	GATC	9 cut(s)	145, 402, 460, 469, 873, 981, 990, 1005, 1049
DpnII	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
Eam1104I	CTCTTC	4 cut(s)	213, 219, 643, 652
EarI	CTCTTC	4 cut(s)	213, 219, 643, 652
Ecl136II	GAGCTC	1 cut(s)	703
Eco147I	AGGCCT	2 cut(s)	58, 562
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	615
Eco72I	CACGTG	1 cut(s)	994
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	515
EcoT22I	ATGCAT	2 cut(s)	799, 925
EcoT38I	GRGCYC	1 cut(s)	705
FaeI	CATG	4 cut(s)	257, 329, 553, 980
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	4 cut(s)	253, 325, 549, 976
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	240, 951
FokI	GGATG	3 cut(s)	29, 80, 705
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	240, 951
FspBI	CTAG	3 cut(s)	182, 567, 789
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	240, 951
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	58, 205, 562
HapII	CCGG	2 cut(s)	79, 291
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	805
Hin1II	CATG	4 cut(s)	257, 329, 553, 980
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	192, 316, 554
HpaII	CCGG	2 cut(s)	79, 291
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	104, 740
Hpy188I	TCNGA	4 cut(s)	297, 489, 700, 750
Hpy188III	TCNNGA	4 cut(s)	147, 706, 869, 986
Hpy8I	GTNNAC	2 cut(s)	104, 740
HpyAV	CCTTC	4 cut(s)	195, 336, 584, 1033
HpyCH4III	ACNGT	3 cut(s)	101, 357, 818
HpyCH4IV	ACGT	3 cut(s)	887, 929, 993
HpyCH4V	TGCA	5 cut(s)	104, 443, 797, 923, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	126, 504, 699
HpySE526I	ACGT	3 cut(s)	887, 929, 993
Hsp92I	GRCGYC	1 cut(s)	805
Hsp92II	CATG	4 cut(s)	257, 329, 553, 980
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	251, 962
LweI	GCATC	3 cut(s)	430, 727, 932
MaeI	CTAG	3 cut(s)	182, 567, 789
MaeII	ACGT	3 cut(s)	887, 929, 993
MalI	GATC	9 cut(s)	145, 402, 460, 469, 873, 981, 990, 1005, 1049
MboI	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
MflI	RGATCY	2 cut(s)	458, 1047
MhlI	GDGCHC	3 cut(s)	106, 705, 836
MluCI	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 685, 965
MmeI	TCCRAC	3 cut(s)	275, 773, 833
Mph1103I	ATGCAT	2 cut(s)	799, 925
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	5 cut(s)	174, 396, 455, 861, 1057
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	79, 291
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	249, 925
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
NlaIII	CATG	4 cut(s)	257, 329, 553, 980
NlaIV	GGNNCC	1 cut(s)	833
NmeAIII	GCCGAG	1 cut(s)	88
NsiI	ATGCAT	2 cut(s)	799, 925
NspI	RCATGY	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	58, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	2 cut(s)	249, 925
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	192, 316, 554
PkrI	GCNGC	2 cut(s)	241, 952
PmaCI	CACGTG	1 cut(s)	994
PmlI	CACGTG	1 cut(s)	994
Ppu21I	YACGTR	1 cut(s)	994
PshBI	ATTAAT	1 cut(s)	861
PsiI	TTATAA	2 cut(s)	332, 582
Psp124BI	GAGCTC	1 cut(s)	705
Psp1406I	AACGTT	1 cut(s)	929
PspCI	CACGTG	1 cut(s)	994
PspN4I	GGNNCC	1 cut(s)	833
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	458, 1047
RsaI	GTAC	3 cut(s)	31, 502, 886
RsaNI	GTAC	3 cut(s)	30, 501, 885
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	705
SaqAI	TTAA	5 cut(s)	174, 396, 455, 861, 1057
SatI	GCNGC	2 cut(s)	240, 951
Sau3AI	GATC	9 cut(s)	143, 400, 458, 467, 871, 979, 988, 1003, 1047
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	106, 705, 836
SfaNI	GCATC	3 cut(s)	430, 727, 932
SfcI	CTRYAG	1 cut(s)	775
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 685, 965
SseBI	AGGCCT	2 cut(s)	58, 562
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	182, 567, 789
SstI	GAGCTC	1 cut(s)	705
StuI	AGGCCT	2 cut(s)	58, 562
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	101, 357, 818
TaiI	ACGT	3 cut(s)	890, 932, 996
TaqI	TCGA	3 cut(s)	90, 707, 1002
TasI	AATT	8 cut(s)	412, 423, 433, 452, 515, 583, 685, 965
TatI	WGTACW	2 cut(s)	29, 500
TfiI	GAWTC	3 cut(s)	192, 316, 554
Tru1I	TTAA	5 cut(s)	174, 396, 455, 861, 1057
Tru9I	TTAA	5 cut(s)	174, 396, 455, 861, 1057
TscAI	CASTG	1 cut(s)	639
TseI	GCWGC	2 cut(s)	239, 950
TspDTI	ATGAA	6 cut(s)	33, 84, 242, 538, 722, 1015
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	1 cut(s)	639
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	3 cut(s)	412, 515, 965
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	3 cut(s)	182, 567, 789
ZrmI	AGTACT	1 cut(s)	502
Zsp2I	ATGCAT	2 cut(s)	799, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.