Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

1499675 .. 1501622

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATGAGTATGGAGATGAAGCAAAGAGTACTAGCTGCCCTCGTGGACATTGGAGGCCGGCCGAGGATGAAAAACTCCGGCAACTTGTTGAGCAGTACGGTGCCCAGAACTGGAACTCCATAGCTGAGAAGCTTCAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGGTGGTTTAATCAACTAGATCCGAGAATCAACCGAAGGCCGTTTAGTGAGGAAGAAGAAGAGAGGCTGCTAGCAGCACATCGCATTCATGGAAACAAGTGGGCACTGATTGCAAGACTGTTTCCAGGCCGTACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCAAGAAGACAAAGAGAGCAGTCCAAAGTTTGTGGGAAGAGAAGCTACCAAGATTTCTGTAATGATCACTCATCAAACACCTCCTCAATTTCCAACAATTTTGATGTAAGCAGGAAATTTAAATCTCAAGGGGAATTGAGATCTTCATCATCAATTGGGTTTGATCAGAATAGTAGCACTAAGTTCTTCGAATTCCGAAATCCAAATAAAGATAGGACAACAATGTTCATGGACTCAAGGCATACTAGTTCTTCCCCTTACAATTGGAACTTTGCTACAATGTCAACAACCTCAAACAACGCCGCATCATCTTCAGTTGGTTTATTGGGAAGGGAAAGAAGAGATTACTTCAACAATGTTATTAGTTCTAACAACAACATTCCCGGTTGCTCGAAAGGTTCGGATCATCAATTCGTTCATCGGAGAAATAACCCGACTACTTCTTCATTCATGTATGGCAGCTACATAGGTTCCACTAGTGCATTTGGGCTTCCAAATTACAAGAGGGTTAATGTTCCAAGTCCTTTTGGGTGCCTCGGTCTTGGCGATCACATTAATCGTCCTGAGCAACATGGAAGGACATTCAAGAAAGAGTTGGCTAATTTTTGTGACAATGCATCGACATTGGCAAAATGGAGGGTTGCAGCCACAGCTAAATTTGGCGACCATGATTGCCAAGATCACGAATCGATCGATCATCACAAGGAAACTCCCTTCATTGATTTTCTTGGTGTGGGGATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

362

Amino Acids

41.17

Weight (kDa)

9.31

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	101, 867
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	3 cut(s)	179, 747, 1082
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	3 cut(s)	452, 527, 992
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	31, 98, 298
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	137, 688, 922
AhlI	ACTAGT	2 cut(s)	581, 812
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	36, 125, 133, 381, 798, 989
AluI	AGCT	6 cut(s)	36, 125, 133, 381, 798, 989
AlwI	GGATC	3 cut(s)	179, 747, 1082
AoxI	GGCC	4 cut(s)	56, 60, 203, 292
ApeKI	GCWGC	5 cut(s)	36, 232, 239, 795, 980
ApoI	RAATTY	3 cut(s)	452, 527, 992
AseI	ATTAAT	1 cut(s)	891
AsuC2I	CCSGG	1 cut(s)	720
AsuII	TTCGAA	1 cut(s)	525
AsuNHI	GCTAGC	1 cut(s)	235
BaeGI	GKGCMC	2 cut(s)	106, 271
BanI	GGYRCC	2 cut(s)	101, 867
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	5 cut(s)	23, 219, 251, 807, 992
BceAI	ACGGC	2 cut(s)	190, 279
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	400, 499
BcnI	CCSGG	1 cut(s)	720
BcuI	ACTAGT	2 cut(s)	581, 812
BfaI	CTAG	5 cut(s)	33, 182, 236, 582, 813
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	6 cut(s)	37, 233, 240, 639, 796, 981
BlsI	GCNGC	6 cut(s)	38, 234, 241, 640, 797, 982
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	291, 720
BmiI	GGNNCC	3 cut(s)	103, 808, 869
BmrFI	CCNGG	2 cut(s)	291, 720
BmsI	GCATC	2 cut(s)	650, 962
BmtI	GCTAGC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	447, 556
BpuMI	CCSGG	1 cut(s)	720
Bsa29I	ATCGAT	2 cut(s)	1025, 1029
BsaBI	GATNNNNATC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	63, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	2 cut(s)	1025, 1029
BseDI	CCNNGG	2 cut(s)	63, 871
BseGI	GGATG	2 cut(s)	10, 73
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	117, 891
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	2 cut(s)	106, 271
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	5 cut(s)	23, 219, 251, 807, 992
Bsh1285I	CGRYCG	2 cut(s)	63, 1029
BshFI	GGCC	4 cut(s)	58, 62, 205, 294
BshNI	GGYRCC	2 cut(s)	101, 867
BshVI	ATCGAT	2 cut(s)	1025, 1029
BsiEI	CGRYCG	2 cut(s)	63, 1029
BsiSI	CCGG	3 cut(s)	59, 79, 720
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	4 cut(s)	58, 62, 205, 294
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	106, 271
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	4 cut(s)	58, 62, 205, 294
BspCNI	CTCAG	2 cut(s)	118, 892
BspDI	ATCGAT	2 cut(s)	1025, 1029
BspLI	GGNNCC	3 cut(s)	103, 808, 869
BspOI	GCTAGC	1 cut(s)	239
BspPI	GGATC	3 cut(s)	179, 747, 1082
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	101, 867
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	63, 871
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	101, 285
Bst6I	CTCTTC	4 cut(s)	146, 219, 368, 670
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	60, 237
BstDEI	CTNAG	3 cut(s)	126, 516, 900
BstF5I	GGATG	2 cut(s)	10, 73
BstMCI	CGRYCG	2 cut(s)	63, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 986
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	289, 718
BstSLI	GKGCMC	2 cut(s)	106, 271
BstV1I	GCAGC	5 cut(s)	23, 219, 251, 807, 992
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	3 cut(s)	184, 476, 1074
BstYI	RGATCY	3 cut(s)	184, 476, 1074
BstZI	CGGCCG	1 cut(s)	60
Bsu15I	ATCGAT	2 cut(s)	1025, 1029
BsuRI	GGCC	4 cut(s)	58, 62, 205, 294
BsuTUI	ATCGAT	2 cut(s)	1025, 1029
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	10, 73
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	60, 237
Cfr10I	RCCGGY	1 cut(s)	58
ClaI	ATCGAT	2 cut(s)	1025, 1029
Csp6I	GTAC	3 cut(s)	30, 97, 297
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	6 cut(s)	254, 326, 565, 787, 908, 1004
CviQI	GTAC	3 cut(s)	30, 97, 297
DdeI	CTNAG	3 cut(s)	126, 516, 900
DraI	TTTAAA	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	4 cut(s)	146, 219, 368, 670
EarI	CTCTTC	4 cut(s)	146, 219, 368, 670
EclXI	CGGCCG	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	955
FaeI	CATG	6 cut(s)	257, 329, 568, 790, 911, 1007
FatI	CATG	6 cut(s)	253, 325, 564, 786, 907, 1003
FbaI	TGATCA	2 cut(s)	400, 499
Fnu4HI	GCNGC	6 cut(s)	37, 233, 240, 639, 796, 981
FokI	GGATG	2 cut(s)	17, 80
FseI	GGCCGGCC	1 cut(s)	62
Fsp4HI	GCNGC	6 cut(s)	37, 233, 240, 639, 796, 981
FspBI	CTAG	5 cut(s)	33, 182, 236, 582, 813
GluI	GCNGC	6 cut(s)	37, 233, 240, 639, 796, 981
HaeIII	GGCC	4 cut(s)	58, 62, 205, 294
HapII	CCGG	3 cut(s)	59, 79, 720
Hin1II	CATG	6 cut(s)	257, 329, 568, 790, 911, 1007
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	192, 316, 569, 1022
HpaII	CCGG	3 cut(s)	59, 79, 720
Hpy166II	GTNNAC	2 cut(s)	47, 621
Hpy188I	TCNGA	5 cut(s)	189, 504, 533, 739, 759
Hpy188III	TCNNGA	3 cut(s)	899, 922, 1019
Hpy8I	GTNNAC	2 cut(s)	47, 621
HpyAV	CCTTC	4 cut(s)	195, 660, 906, 1060
HpyCH4III	ACNGT	2 cut(s)	101, 285
HpyCH4V	TGCA	4 cut(s)	278, 818, 953, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 986
HpyF3I	CTNAG	3 cut(s)	126, 516, 900
Hsp92II	CATG	6 cut(s)	257, 329, 568, 790, 911, 1007
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Ksp22I	TGATCA	2 cut(s)	400, 499
Lsp1109I	GCAGC	5 cut(s)	23, 219, 251, 807, 992
LweI	GCATC	2 cut(s)	650, 962
MaeI	CTAG	5 cut(s)	33, 182, 236, 582, 813
MaeIII	GTNAC	1 cut(s)	944
MfeI	CAATTG	2 cut(s)	489, 598
MflI	RGATCY	3 cut(s)	184, 476, 1074
MhlI	GDGCHC	2 cut(s)	106, 271
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	955
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	5 cut(s)	174, 456, 846, 891, 1084
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	3 cut(s)	59, 79, 720
MspR9I	CCNGG	2 cut(s)	291, 720
MunI	CAATTG	2 cut(s)	489, 598
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	275, 986
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	720
NgoMIV	GCCGGC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	257, 329, 568, 790, 911, 1007
NlaIV	GGNNCC	3 cut(s)	103, 808, 869
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	944
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	2 cut(s)	879, 1026
PctI	GAATGC	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	192, 316, 1022
PkrI	GCNGC	6 cut(s)	38, 234, 241, 640, 797, 982
Ple19I	CGATCG	1 cut(s)	1029
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	891
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	103, 808, 869
PsuI	RGATCY	3 cut(s)	184, 476, 1074
PvuI	CGATCG	1 cut(s)	1029
RigI	GGCCGGCC	1 cut(s)	62
RsaI	GTAC	3 cut(s)	31, 98, 298
RsaNI	GTAC	3 cut(s)	30, 97, 297
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	5 cut(s)	174, 456, 846, 891, 1084
SatI	GCNGC	6 cut(s)	37, 233, 240, 639, 796, 981
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	291, 720
SduI	GDGCHC	2 cut(s)	106, 271
SfaNI	GCATC	2 cut(s)	650, 962
SfuI	TTCGAA	1 cut(s)	525
SmiI	ATTTAAAT	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	462, 571
SmoI	CTYRAG	2 cut(s)	462, 571
SpeI	ACTAGT	2 cut(s)	581, 812
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	5 cut(s)	33, 182, 236, 582, 813
StyD4I	CCNGG	2 cut(s)	289, 718
SwaI	ATTTAAAT	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	101, 285
TaqI	TCGA	5 cut(s)	525, 728, 956, 1025, 1029
TaqII	GACCGA	1 cut(s)	863
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	3 cut(s)	192, 316, 1022
Tru1I	TTAA	5 cut(s)	174, 456, 846, 891, 1084
Tru9I	TTAA	5 cut(s)	174, 456, 846, 891, 1084
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	5 cut(s)	36, 232, 239, 795, 980
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	9 cut(s)	33, 84, 242, 471, 553, 743, 771, 775, 1042
TspRI	CASTG	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	3 cut(s)	452, 527, 992
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	5 cut(s)	33, 182, 236, 582, 813
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.