Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

1505356 .. 1507152

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1010900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGATTATGGGGATGAAGCAAAGAGTACTAGTTGCCCACGTGGACATTGGAGGCCTGCCGAGGATGAAAAACTCCGGCAACTTGTCGAGCAATACGGTGCCCAGAACTGGAACTCCATCGCTGAGAAGCTTCAAGGAAGATCAGGAAAGAGCTGTAGATTGAGGTGGTTTAATCAGCTAGACCCGAAAATTAACCGAAGGCCATTCAGCGAGGAAGAGGAAGAGAGGCTTCTGGCAGCACATCGCATTCATGGAAACAAGTGGGCACTGATAGCAAGGCTTTTTCCCGGTCGGACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCAAGAAGGCAAAGAGAACAGTCCAAAGTTTGTGGTAAGAGAAGTTTCCAGGATTTCTGTAATGATCACTCACCAAATACCTCCTCATTTTCCAACAATTTTGATGCAAGCGGGAGGTTAAGATCTCAAGGATCATCAATCGGGTTTGATCAGAATAATATTAGTACGAAGTTCTTTGAATTCCGAAACCCCAATAAAGATAGGGCAATGTTCATGGACTCAAGGCCTACTAGCTCCTCTCCTTATAATTGGAACTTTGCTTCAATGTCAGCAACATCAAACAACTCATCATCTTCAGTGGATTTATTGGGAAGAGAAAGAAGAGATTACTTCAACAATGGTAGTTCTAATTATACGATTACTGAGTTCTCCAAAGGTTTACATCCTCAGTTCGTTCATCGTAGACATAATCCAAGTTCATCATTCCTATATGGTAGATATAGAGGTTCTTCTAGTAATGCATTTGGGCGTCCAACTAACAATAGGGTTAATGTTCCAAGTCCTTTTGGGTGCCTCAATCCTGCCGATTATCACATTAACCGTCATGATCAACACGGAAGTACGTTCAAGATAGGGTTGGCTAATCTTTATGAGAATGCATCAACGTTGCAAAAGTGGAGGGTTGCAGCTACAACTACCAAATTTGATGACCATGATCCTCAAGATCACGAATCTATCGATCATAACAAGGAAACTCCATTCATAGATTTTCTTGGTGTGGGGATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

357

Amino Acids

40.84

Weight (kDa)

9.34

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 61	3.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	7.7e-20	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 109	7.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	2.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	332, 582
AccB1I	GGYRCC	2 cut(s)	101, 846
AccI	GTMKAC	1 cut(s)	739
AciI	CCGC	1 cut(s)	447
AclI	AACGTT	1 cut(s)	941
AclWI	GGATC	3 cut(s)	475, 986, 1067
AcsI	RAATTY	2 cut(s)	515, 977
AcuI	CTGAAG	1 cut(s)	615
AcvI	CACGTG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	805
AfaI	GTAC	3 cut(s)	31, 502, 898
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	5 cut(s)	137, 515, 600, 670, 904
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	384
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	5 cut(s)	133, 156, 181, 570, 965
AluI	AGCT	5 cut(s)	133, 156, 181, 570, 965
AlwI	GGATC	3 cut(s)	475, 986, 1067
AoxI	GGCC	3 cut(s)	56, 203, 560
ApeKI	GCWGC	2 cut(s)	239, 962
ApoI	RAATTY	2 cut(s)	515, 977
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	399
BaeGI	GKGCMC	2 cut(s)	106, 271
BanI	GGYRCC	2 cut(s)	101, 846
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	251, 974
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	3 cut(s)	400, 484, 883
BcnI	CCSGG	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	4 cut(s)	33, 182, 567, 789
BfmI	CTRYAG	1 cut(s)	157
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	240, 963
BlsI	GCNGC	2 cut(s)	241, 964
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	291, 386
BmiI	GGNNCC	2 cut(s)	103, 848
BmrFI	CCNGG	2 cut(s)	291, 386
BmsI	GCATC	2 cut(s)	430, 944
BpuEI	CTTGAG	3 cut(s)	447, 541, 981
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	22, 73, 718
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	117, 690, 737
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	409, 562
BseSI	GKGCMC	2 cut(s)	106, 271
BseXI	GCAGC	2 cut(s)	251, 974
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	58, 205, 562
BshNI	GGYRCC	2 cut(s)	101, 846
BshVI	ATCGAT	1 cut(s)	1014
BsiEI	CGRYCG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	79, 291
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	249, 937
BsnI	GGCC	3 cut(s)	58, 205, 562
Bsp1286I	GDGCHC	2 cut(s)	106, 271
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	3 cut(s)	58, 205, 562
BspCNI	CTCAG	3 cut(s)	118, 691, 736
BspDI	ATCGAT	1 cut(s)	1014
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	2 cut(s)	103, 848
BspPI	GGATC	3 cut(s)	475, 986, 1067
BspT107I	GGYRCC	2 cut(s)	101, 846
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	805
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	3 cut(s)	101, 357, 878
Bst6I	CTCTTC	4 cut(s)	213, 219, 643, 652
BstACI	GRCGYC	1 cut(s)	805
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	60, 445
BstDEI	CTNAG	3 cut(s)	126, 699, 723
BstF5I	GGATG	3 cut(s)	22, 73, 718
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	289, 384
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	2 cut(s)	106, 271
BstV1I	GCAGC	2 cut(s)	251, 974
BstX2I	RGATCY	2 cut(s)	458, 1059
BstYI	RGATCY	2 cut(s)	458, 1059
Bsu15I	ATCGAT	1 cut(s)	1014
BsuRI	GGCC	3 cut(s)	58, 205, 562
BsuTUI	ATCGAT	1 cut(s)	1014
BtgZI	GCGATG	2 cut(s)	106, 230
BtsCI	GGATG	3 cut(s)	22, 73, 718
BtsIMutI	CAGTG	2 cut(s)	269, 639
Cac8I	GCNNGC	2 cut(s)	60, 445
CciI	TCATGA	1 cut(s)	880
ClaI	ATCGAT	1 cut(s)	1014
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	30, 501, 897
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	254, 326, 550, 881, 989
CviQI	GTAC	3 cut(s)	30, 501, 897
DdeI	CTNAG	3 cut(s)	126, 699, 723
Eam1104I	CTCTTC	4 cut(s)	213, 219, 643, 652
EarI	CTCTTC	4 cut(s)	213, 219, 643, 652
Eco147I	AGGCCT	2 cut(s)	58, 562
Eco57I	CTGAAG	1 cut(s)	615
Eco72I	CACGTG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	384
EcoT22I	ATGCAT	2 cut(s)	799, 937
FaeI	CATG	5 cut(s)	257, 329, 553, 884, 992
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	5 cut(s)	253, 325, 549, 880, 988
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	3 cut(s)	400, 484, 883
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	240, 963
FokI	GGATG	3 cut(s)	29, 80, 705
Fsp4HI	GCNGC	2 cut(s)	240, 963
FspBI	CTAG	4 cut(s)	33, 182, 567, 789
GluI	GCNGC	2 cut(s)	240, 963
HaeIII	GGCC	3 cut(s)	58, 205, 562
HapII	CCGG	2 cut(s)	79, 291
HgaI	GACGC	1 cut(s)	794
Hin1I	GRCGYC	1 cut(s)	805
Hin1II	CATG	5 cut(s)	257, 329, 553, 884, 992
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	316, 554, 1007
HpaII	CCGG	2 cut(s)	79, 291
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	3 cut(s)	47, 716, 740
Hpy188I	TCNGA	3 cut(s)	297, 489, 521
Hpy188III	TCNNGA	5 cut(s)	147, 881, 904, 998, 1004
Hpy8I	GTNNAC	3 cut(s)	47, 716, 740
HpyAV	CCTTC	2 cut(s)	195, 336
HpyCH4III	ACNGT	3 cut(s)	101, 357, 878
HpyCH4IV	ACGT	3 cut(s)	43, 899, 941
HpyCH4V	TGCA	5 cut(s)	443, 797, 935, 946, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	126, 699, 723
HpySE526I	ACGT	3 cut(s)	43, 899, 941
Hsp92I	GRCGYC	1 cut(s)	805
Hsp92II	CATG	5 cut(s)	257, 329, 553, 884, 992
Ksp22I	TGATCA	3 cut(s)	400, 484, 883
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	251, 974
LweI	GCATC	2 cut(s)	430, 944
MaeI	CTAG	4 cut(s)	33, 182, 567, 789
MaeII	ACGT	3 cut(s)	43, 899, 941
MboII	GAAGA	9 cut(s)	153, 230, 236, 325, 621, 660, 669, 777, 1056
MflI	RGATCY	2 cut(s)	458, 1059
MhlI	GDGCHC	2 cut(s)	106, 271
MluCI	AATT	6 cut(s)	192, 433, 515, 583, 685, 977
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	3 cut(s)	275, 453, 833
Mph1103I	ATGCAT	2 cut(s)	799, 937
MseI	TTAA	6 cut(s)	174, 195, 455, 825, 873, 1069
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	79, 291
MspR9I	CCNGG	2 cut(s)	291, 386
Mva1269I	GAATGC	2 cut(s)	249, 937
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NlaIII	CATG	5 cut(s)	257, 329, 553, 884, 992
NlaIV	GGNNCC	2 cut(s)	103, 848
NmeAIII	GCCGAG	1 cut(s)	88
NsiI	ATGCAT	2 cut(s)	799, 937
NspI	RCATGY	1 cut(s)	329
PagI	TCATGA	1 cut(s)	880
PceI	AGGCCT	2 cut(s)	58, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	1011
PctI	GAATGC	2 cut(s)	249, 937
PfeI	GAWTC	2 cut(s)	316, 1007
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	241, 964
PleI	GAGTC	1 cut(s)	548
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	44
PsiI	TTATAA	2 cut(s)	332, 582
Psp1406I	AACGTT	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	103, 848
PsuI	RGATCY	2 cut(s)	458, 1059
RsaI	GTAC	3 cut(s)	31, 502, 898
RsaNI	GTAC	3 cut(s)	30, 501, 897
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	6 cut(s)	174, 195, 455, 825, 873, 1069
SatI	GCNGC	2 cut(s)	240, 963
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	291, 386
SduI	GDGCHC	2 cut(s)	106, 271
SfaNI	GCATC	2 cut(s)	430, 944
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	3 cut(s)	462, 556, 996
SmoI	CTYRAG	3 cut(s)	462, 556, 996
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	6 cut(s)	192, 433, 515, 583, 685, 977
SseBI	AGGCCT	2 cut(s)	58, 562
SsiI	CCGC	1 cut(s)	447
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	33, 182, 567, 789
StuI	AGGCCT	2 cut(s)	58, 562
StyD4I	CCNGG	2 cut(s)	289, 384
TaaI	ACNGT	3 cut(s)	101, 357, 878
TaiI	ACGT	3 cut(s)	46, 902, 944
TaqI	TCGA	2 cut(s)	90, 1014
TasI	AATT	6 cut(s)	192, 433, 515, 583, 685, 977
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	316, 1007
Tru1I	TTAA	6 cut(s)	174, 195, 455, 825, 873, 1069
Tru9I	TTAA	6 cut(s)	174, 195, 455, 825, 873, 1069
TscAI	CASTG	2 cut(s)	276, 639
TseI	GCWGC	2 cut(s)	239, 962
TspDTI	ATGAA	7 cut(s)	33, 84, 242, 538, 722, 744, 1027
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	2 cut(s)	276, 639
XapI	RAATTY	2 cut(s)	515, 977
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	4 cut(s)	33, 182, 567, 789
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	2 cut(s)	799, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.