Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

29284631 .. 29286153

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATGGTTATGGAGCTTCTCCTGCGGGCTCTGCAGATGAGTCAAAGTCGACGTCTTGCCCAAGAGGACACTGGAGGCCAGCAGAAGATGAAAGACTCCGGCAACTAGTCGAACAGTACGGTGCCCAGAACTGGAACTCCATAGCAGAGAAGCTTCAAGGAAGATCTGGGAAAAGTTGTAGGTTGAGGTGGTTTAATCAACTAGACCCAAGAATCAACAGAAGGCCGTTCAGTGAAGAAGAAGAAGAGAGGCTTCTAGCGGCTCATCGGATTCACGGAAACAAGTGGGCAATGATAGCAAGACTGTTTCCAGGTCGGACTGATAATGCCGTGAAGAATCACTGGCATGTTATCATGGCCAGAAGGCAAAGAGAGCAATCTAAGCTAATTTGTGGTGGAAACAAGAGAAGCTACCAAGATTTCTTAATCTCTAGTGACTCTATATCGAACACCTCCTCATCAATTTCCAACACTTTTGATTCAAGGAAATTGAAATCATCAACTGGGTTTGACCACAATCAGAACAGTACTACTACTAGTACTGTGTTTGAATTCAGGAACCCTGGTAAGGGTAGGGCAATGTCGTTCATGGAATCATCAAGGCCTAAAAGCTCTTCTTCTCATAATTGGAACTTTGCTTCAATGACAAGTTCATTATCAATTCCCAACTCGACATCTTCAGCGGGCTTCTTGAGAGGATCTGAAATATCTAATTACAAAGTTTCGGAGTGCTTGAAGGGTAATTCGGATCATCTTTTTGTTCATCGCATTAATGGGCAATATTCAAGTCCGGCATTCGTGTATGGCAGGTATAGAGGTTCCGGCAGTAGTAGTACTTTCGGGCTGCCAAATCCCAGGAGGGTTAATGTTCCAATTAATCCTTTTGGGTACCTCAGTAGTAGTACTAGTCCTCTTGGAGATATTCAAGAGCAGCATGGAAGCAGGATGATATTGAAGAAAGAGTACCTGAGGGCTGCATCATCTACTACATTTGAAGACCATCCTCATCCTCATCATGATTCATCCATCGAGCATAACAAGGAAGTTCCCTTCATAGATTTTCTTGGTGTGGGGATATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

362

Amino Acids

40.46

Weight (kDa)

9.64

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 68	6.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 85	4.8e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 116	5.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	77 - 125	6.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	798
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	2 cut(s)	122, 888
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	3 cut(s)	26, 260, 683
AclWI	GGATC	2 cut(s)	706, 756
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	7 cut(s)	119, 529, 541, 835, 890, 904, 965
AfiI	CCNNNNNNNGG	3 cut(s)	132, 568, 569
AhlI	ACTAGT	3 cut(s)	106, 536, 905
AjnI	CCWGG	3 cut(s)	310, 562, 854
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	6 cut(s)	17, 154, 385, 411, 612, 1083
AluI	AGCT	6 cut(s)	17, 154, 385, 411, 612, 1083
AlwI	GGATC	2 cut(s)	706, 756
AoxI	GGCC	4 cut(s)	77, 224, 357, 602
ApeKI	GCWGC	3 cut(s)	844, 931, 974
ApoI	RAATTY	1 cut(s)	551
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AseI	ATTAAT	2 cut(s)	771, 876
Asp718I	GGTACC	1 cut(s)	888
AxyI	CCTNAGG	1 cut(s)	968
BaeGI	GKGCMC	1 cut(s)	127
BaeI	ACNNNNGTAYC	2 cut(s)	880, 913
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	122, 888
BanII	GRGCYC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	947, 979
BbsI	GAAGAC	1 cut(s)	1002
BbvI	GCAGC	3 cut(s)	831, 943, 961
BccI	CCATC	2 cut(s)	1008, 1034
BceAI	ACGGC	2 cut(s)	211, 314
BciT130I	CCWGG	3 cut(s)	312, 564, 856
BcuI	ACTAGT	3 cut(s)	106, 536, 905
BfaI	CTAG	8 cut(s)	107, 203, 257, 432, 537, 906, 1080, 1084
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	798
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	4 cut(s)	261, 845, 932, 975
BlsI	GCNGC	4 cut(s)	262, 846, 933, 976
BmcAI	AGTACT	4 cut(s)	529, 541, 835, 904
Bme1390I	CCNGG	3 cut(s)	312, 564, 856
BmiI	GGNNCC	4 cut(s)	124, 560, 820, 890
BmrFI	CCNGG	3 cut(s)	312, 564, 856
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	986
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	1002
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	712
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	562, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 568, 569
Bse1I	ACTGG	4 cut(s)	77, 137, 347, 508
Bse21I	CCTNAGG	1 cut(s)	968
Bse3DI	GCAATG	2 cut(s)	297, 585
BseBI	CCWGG	3 cut(s)	312, 564, 856
BseDI	CCNNGG	2 cut(s)	562, 854
BseGI	GGATG	5 cut(s)	10, 951, 1000, 1006, 1022
BseLI	CCNNNNNNNGG	3 cut(s)	132, 568, 569
BseMI	GCAATG	2 cut(s)	297, 585
BseMII	CTCAG	2 cut(s)	907, 959
BseNI	ACTGG	4 cut(s)	77, 137, 347, 508
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	831, 943, 961
BshFI	GGCC	4 cut(s)	79, 226, 359, 604
BshNI	GGYRCC	2 cut(s)	122, 888
BsiSI	CCGG	3 cut(s)	100, 791, 822
BslI	CCNNNNNNNGG	3 cut(s)	132, 568, 569
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	4 cut(s)	79, 226, 359, 604
Bsp1286I	GDGCHC	2 cut(s)	32, 127
Bsp143I	GATC	3 cut(s)	164, 698, 748
BspACI	CCGC	3 cut(s)	26, 260, 683
BspANI	GGCC	4 cut(s)	79, 226, 359, 604
BspCNI	CTCAG	2 cut(s)	906, 960
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	4 cut(s)	124, 560, 820, 890
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	2 cut(s)	706, 756
BspQI	GCTCTTC	1 cut(s)	619
BspT107I	GGYRCC	2 cut(s)	122, 888
BsrDI	GCAATG	2 cut(s)	297, 585
BsrI	ACTGG	4 cut(s)	77, 137, 347, 508
BssECI	CCNNGG	2 cut(s)	562, 854
BssMI	GATC	3 cut(s)	164, 698, 748
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	3 cut(s)	312, 564, 856
Bst4CI	ACNGT	5 cut(s)	117, 122, 306, 527, 544
Bst6I	CTCTTC	2 cut(s)	240, 619
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	28, 81, 685
BstDEI	CTNAG	3 cut(s)	381, 893, 968
BstF5I	GGATG	5 cut(s)	10, 951, 1000, 1006, 1022
BstKTI	GATC	3 cut(s)	167, 701, 751
BstMBI	GATC	3 cut(s)	164, 698, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 32, 296, 373, 382
BstNI	CCWGG	3 cut(s)	312, 564, 856
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	310, 562, 854
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	831, 943, 961
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	2 cut(s)	164, 698
BstYI	RGATCY	2 cut(s)	164, 698
Bsu36I	CCTNAGG	1 cut(s)	968
BsuRI	GGCC	4 cut(s)	79, 226, 359, 604
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	5 cut(s)	10, 951, 1000, 1006, 1022
BtsIMutI	CAGTG	3 cut(s)	70, 238, 340
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	28, 81, 685
CciI	TCATGA	1 cut(s)	1015
Csp6I	GTAC	7 cut(s)	118, 528, 540, 834, 889, 903, 964
CviAII	CATG	5 cut(s)	347, 355, 589, 935, 1016
CviQI	GTAC	7 cut(s)	118, 528, 540, 834, 889, 903, 964
DdeI	CTNAG	3 cut(s)	381, 893, 968
DpnI	GATC	3 cut(s)	166, 700, 750
DpnII	GATC	3 cut(s)	164, 698, 748
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	240, 619
EarI	CTCTTC	2 cut(s)	240, 619
Eco147I	AGGCCT	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	1077
Eco57I	CTGAAG	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	968
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	310, 562, 854
EcoRV	GATATC	1 cut(s)	1077
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	5 cut(s)	350, 358, 592, 938, 1019
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 601, 633
FatI	CATG	5 cut(s)	346, 354, 588, 934, 1015
FauI	CCCGC	2 cut(s)	19, 676
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	4 cut(s)	261, 845, 932, 975
FokI	GGATG	5 cut(s)	17, 958, 987, 993, 1009
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	261, 845, 932, 975
FspBI	CTAG	8 cut(s)	107, 203, 257, 432, 537, 906, 1080, 1084
GluI	GCNGC	4 cut(s)	261, 845, 932, 975
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	79, 226, 359, 604
HapII	CCGG	3 cut(s)	100, 791, 822
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	350, 358, 592, 938, 1019
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	9 cut(s)	41, 96, 213, 271, 337, 437, 479, 593, 1019
HpaII	CCGG	3 cut(s)	100, 791, 822
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	6 cut(s)	270, 318, 522, 703, 727, 748
Hpy188III	TCNNGA	4 cut(s)	556, 691, 926, 1016
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	216, 357, 730, 1060
HpyCH4III	ACNGT	5 cut(s)	117, 122, 306, 527, 544
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	35, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 32, 296, 373, 382
HpyF3I	CTNAG	3 cut(s)	381, 893, 968
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	350, 358, 592, 938, 1019
KpnI	GGTACC	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	164, 698, 748
LguI	GCTCTTC	1 cut(s)	619
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	3 cut(s)	831, 943, 961
LweI	GCATC	1 cut(s)	986
MaeI	CTAG	8 cut(s)	107, 203, 257, 432, 537, 906, 1080, 1084
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	3 cut(s)	166, 700, 750
MboI	GATC	3 cut(s)	164, 698, 748
MflI	RGATCY	2 cut(s)	164, 698
MhlI	GDGCHC	2 cut(s)	32, 127
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	9 cut(s)	387, 462, 488, 551, 625, 660, 712, 742, 873
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	50, 90, 431
MmeI	TCCRAC	2 cut(s)	296, 492
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	5 cut(s)	195, 425, 771, 864, 876
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	3 cut(s)	100, 791, 822
MspR9I	CCNGG	3 cut(s)	312, 564, 856
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	3 cut(s)	312, 564, 856
MwoI	GCNNNNNNNGC	5 cut(s)	23, 32, 296, 373, 382
NdeII	GATC	3 cut(s)	164, 698, 748
NlaIII	CATG	5 cut(s)	350, 358, 592, 938, 1019
NlaIV	GGNNCC	4 cut(s)	124, 560, 820, 890
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	350
PagI	TCATGA	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	619
PctI	GAATGC	1 cut(s)	794
PfeI	GAWTC	6 cut(s)	213, 271, 337, 479, 593, 1019
PkrI	GCNGC	4 cut(s)	262, 846, 933, 976
PleI	GAGTC	3 cut(s)	49, 90, 431
PpsI	GAGTC	3 cut(s)	49, 90, 431
PshBI	ATTAAT	2 cut(s)	771, 876
Psp6I	CCWGG	3 cut(s)	310, 562, 854
PspGI	CCWGG	3 cut(s)	310, 562, 854
PspN4I	GGNNCC	4 cut(s)	124, 560, 820, 890
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	164, 698
RsaI	GTAC	7 cut(s)	119, 529, 541, 835, 890, 904, 965
RsaNI	GTAC	7 cut(s)	118, 528, 540, 834, 889, 903, 964
RseI	CAYNNNNRTG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	5 cut(s)	195, 425, 771, 864, 876
SatI	GCNGC	4 cut(s)	261, 845, 932, 975
Sau3AI	GATC	3 cut(s)	164, 698, 748
ScaI	AGTACT	4 cut(s)	529, 541, 835, 904
SchI	GAGTC	3 cut(s)	50, 90, 431
ScrFI	CCNGG	3 cut(s)	312, 564, 856
SduI	GDGCHC	2 cut(s)	32, 127
SfaNI	GCATC	1 cut(s)	986
SfcI	CTRYAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	691
SmoI	CTYRAG	1 cut(s)	691
SpeI	ACTAGT	3 cut(s)	106, 536, 905
Sse9I	AATT	9 cut(s)	387, 462, 488, 551, 625, 660, 712, 742, 873
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	3 cut(s)	26, 260, 683
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	8 cut(s)	107, 203, 257, 432, 537, 906, 1080, 1084
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	3 cut(s)	310, 562, 854
TaaI	ACNGT	5 cut(s)	117, 122, 306, 527, 544
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	5 cut(s)	50, 111, 446, 671, 1029
TasI	AATT	9 cut(s)	387, 462, 488, 551, 625, 660, 712, 742, 873
TatI	WGTACW	4 cut(s)	527, 539, 833, 902
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	6 cut(s)	213, 271, 337, 479, 593, 1019
Tru1I	TTAA	5 cut(s)	195, 425, 771, 864, 876
Tru9I	TTAA	5 cut(s)	195, 425, 771, 864, 876
TscAI	CASTG	3 cut(s)	77, 238, 347
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	3 cut(s)	844, 931, 974
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	6 cut(s)	105, 577, 642, 752, 1011, 1042
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	3 cut(s)	77, 238, 347
VspI	ATTAAT	2 cut(s)	771, 876
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	8 cut(s)	107, 203, 257, 432, 537, 906, 1080, 1084
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	4 cut(s)	529, 541, 835, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.