Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015542

Physical Location & Seq

Genomic Coordinates Reverse (-)

31684578 .. 31689045

Gene Structure 4468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCGCTCGACCCGAGGCAATTGAAACCTACCAATTCCACCGCCCTCCATTTAATTAGACATGCGACGTTAGAATGCTCGAACAATGATTTGATTGGTGGGAAAAGTTGTAGGTTGAGGTGGTTTAATCAACTAGACCCAAGAATCAACAGAAGGCCGTTTAGTGAAGAAGAAGAAGAGAGGCTTCTAGCGGCTCATCGGATTCACGGAAACAAGTGGGCAATGATAGCAAGACTGTTTCCAGGTCGGACTGATAATGCCGTGAAGAATCACTGGCATGTTATCATGGCCAGAAGGCAAAGAGAGCAATCTAAACTAATTTGTGGTGGAAACAAGAGAAGCTACCAAGATTTCTTAATCTCTAGTGACTCTATATCGAACACCTCCTCATCAATTTCCAACACTTTTGATTCAAGGAAATTGAAATCATCAACTGGGTTTGACCACAATCAGAACAGTACTACTACTAGTACTATGTTTGAATTCAGGAACCCTGGTAAAGGTAGGGCAATGTCGTTCATGGAATCATCAAGGCCTCAAAGCTCTTCTTCTCATAATTGGAACTTTGCTTCAATGACAAGTTCATTATCAATTCCCAACTCGACATCCTCAGCGGGCTTCTTGAGAGGATCTGAAATATCTAATTACAAAGTTTCGGAGTGCTTGAAGGGTAATTCGGATCATCTTTTTGTTCATCGCATTAATGGGCAATATTCAAGTCCGGCATTCTTGTATGGCAGGTATAGAGGTTCCGGCAGTAGTAGTACTTTCGGGCTGCCAAATCCCAGGAGGGTTAATGTTCCAATTAATCCTTTTGGGTACCTCAGTAGTAGTACTAGTCCTCTTGGAGATATTCATGAGCAGCATGGAAGCAGGATGATATTGAAGAAAGAGTACCTGAGGGCTGCATCATCTACTACATTTGAAGACCATCCTCATCCTCATCATGATTCATCCATCGAGCATAACAAGGAAGTTCCCTTCATAGATTTTCTTGGTGTGGGGATATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.99

Weight (kDa)

9.74

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 93	5.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 102	6.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15040
malus_domestica	MD05G1011100.v1.1 MD10G1010900.v1.1
prunus_persica	Prupe.8G016100_v2.0.a1
pyrus_communis	pycom05g00640 pycom10g00700
rosa_chinensis	RchiOBHm_Chr6g0277601
rosa_laevigata	RLG00000013287
rosa_multiflora	Rmu_sc0001846.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191170
rosa_rugosa	Rorug06G0110300
rosa_samantha	Rh6AG220500 Rh6BG224500 Rh6CG226700 Rh6DG217300
rosa_wichuraiana	Rw6G019330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	819
AciI	CCGC	3 cut(s)	42, 191, 614
AclWI	GGATC	2 cut(s)	637, 687
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	6 cut(s)	460, 472, 766, 821, 835, 896
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	9 cut(s)	25, 414, 424, 482, 573, 667, 717, 886, 926
AhlI	ACTAGT	2 cut(s)	467, 836
AjnI	CCWGG	3 cut(s)	241, 493, 785
AluBI	AGCT	3 cut(s)	342, 543, 1014
AluI	AGCT	3 cut(s)	342, 543, 1014
AlwI	GGATC	2 cut(s)	637, 687
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	155, 288, 533
ApeKI	GCWGC	3 cut(s)	775, 862, 905
ApoI	RAATTY	1 cut(s)	482
AseI	ATTAAT	2 cut(s)	702, 807
Asp718I	GGTACC	1 cut(s)	819
AvaI	CYCGRG	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	899
BaeI	ACNNNNGTAYC	2 cut(s)	811, 844
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	819
BarI	GAAGNNNNNNTAC	2 cut(s)	878, 910
BbsI	GAAGAC	1 cut(s)	933
BbvCI	CCTCAGC	1 cut(s)	610
BbvI	GCAGC	3 cut(s)	762, 874, 892
BccI	CCATC	2 cut(s)	939, 965
BceAI	ACGGC	2 cut(s)	142, 245
BciT130I	CCWGG	3 cut(s)	243, 495, 787
BcuI	ACTAGT	2 cut(s)	467, 836
BfaI	CTAG	7 cut(s)	134, 188, 363, 468, 837, 1011, 1015
BfuAI	ACCTGC	1 cut(s)	729
BisI	GCNGC	4 cut(s)	192, 776, 863, 906
BlsI	GCNGC	4 cut(s)	193, 777, 864, 907
BmcAI	AGTACT	4 cut(s)	460, 472, 766, 835
Bme1390I	CCNGG	3 cut(s)	243, 495, 787
BmeT110I	CYCGRG	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	491, 751, 821
BmrFI	CCNGG	3 cut(s)	243, 495, 787
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	917
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	933
Bpu10I	CCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	643
BsaJI	CCNNGG	3 cut(s)	14, 493, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	278, 439
Bse21I	CCTNAGG	1 cut(s)	899
Bse3DI	GCAATG	2 cut(s)	228, 516
BseBI	CCWGG	3 cut(s)	243, 495, 787
BseDI	CCNNGG	3 cut(s)	14, 493, 785
BseGI	GGATG	5 cut(s)	605, 882, 931, 937, 953
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	2 cut(s)	228, 516
BseMII	CTCAG	3 cut(s)	624, 838, 890
BseNI	ACTGG	2 cut(s)	278, 439
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	762, 874, 892
BshFI	GGCC	3 cut(s)	157, 290, 535
BshNI	GGYRCC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	722, 753
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmI	GAATGC	2 cut(s)	80, 725
BsnI	GGCC	3 cut(s)	157, 290, 535
BsoBI	CYCGRG	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	629, 679
BspACI	CCGC	3 cut(s)	42, 191, 614
BspANI	GGCC	3 cut(s)	157, 290, 535
BspCNI	CTCAG	3 cut(s)	623, 837, 891
BspHI	TCATGA	2 cut(s)	856, 946
BspLI	GGNNCC	3 cut(s)	491, 751, 821
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	637, 687
BspQI	GCTCTTC	1 cut(s)	550
BspT107I	GGYRCC	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	228, 516
BsrI	ACTGG	2 cut(s)	278, 439
BssECI	CCNNGG	3 cut(s)	14, 493, 785
BssMI	GATC	2 cut(s)	629, 679
Bst2UI	CCWGG	3 cut(s)	243, 495, 787
Bst4CI	ACNGT	2 cut(s)	237, 458
Bst6I	CTCTTC	2 cut(s)	171, 550
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	3 cut(s)	610, 824, 899
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	5 cut(s)	605, 882, 931, 937, 953
BstKTI	GATC	2 cut(s)	632, 682
BstMBI	GATC	2 cut(s)	629, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 304
BstNI	CCWGG	3 cut(s)	243, 495, 787
BstNSI	RCATGY	2 cut(s)	65, 281
BstSCI	CCNGG	3 cut(s)	241, 493, 785
BstV1I	GCAGC	3 cut(s)	762, 874, 892
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	1 cut(s)	899
BsuRI	GGCC	3 cut(s)	157, 290, 535
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	5 cut(s)	605, 882, 931, 937, 953
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	616
CciI	TCATGA	2 cut(s)	856, 946
Csp6I	GTAC	6 cut(s)	459, 471, 765, 820, 834, 895
CviAII	CATG	7 cut(s)	62, 278, 286, 520, 857, 866, 947
CviQI	GTAC	6 cut(s)	459, 471, 765, 820, 834, 895
DdeI	CTNAG	3 cut(s)	610, 824, 899
DpnI	GATC	2 cut(s)	631, 681
DpnII	GATC	2 cut(s)	629, 679
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	171, 550
EarI	CTCTTC	2 cut(s)	171, 550
Eco147I	AGGCCT	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	1008
Eco81I	CCTNAGG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	241, 493, 785
EcoRV	GATATC	1 cut(s)	1008
FaeI	CATG	7 cut(s)	65, 281, 289, 523, 860, 869, 950
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 532, 564
FatI	CATG	7 cut(s)	61, 277, 285, 519, 856, 865, 946
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	192, 776, 863, 906
FokI	GGATG	5 cut(s)	592, 889, 918, 924, 940
Fsp4HI	GCNGC	4 cut(s)	192, 776, 863, 906
FspBI	CTAG	7 cut(s)	134, 188, 363, 468, 837, 1011, 1015
GluI	GCNGC	4 cut(s)	192, 776, 863, 906
HaeIII	GGCC	3 cut(s)	157, 290, 535
HapII	CCGG	2 cut(s)	722, 753
Hin1II	CATG	7 cut(s)	65, 281, 289, 523, 860, 869, 950
HinfI	GANTC	7 cut(s)	144, 202, 268, 368, 410, 524, 950
HpaII	CCGG	2 cut(s)	722, 753
Hpy188I	TCNGA	6 cut(s)	201, 249, 453, 634, 658, 679
Hpy188III	TCNNGA	4 cut(s)	487, 622, 857, 947
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	147, 288, 661, 991
HpyCH4III	ACNGT	2 cut(s)	237, 458
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 304
HpyF3I	CTNAG	3 cut(s)	610, 824, 899
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	7 cut(s)	65, 281, 289, 523, 860, 869, 950
KpnI	GGTACC	1 cut(s)	823
Kzo9I	GATC	2 cut(s)	629, 679
LguI	GCTCTTC	1 cut(s)	550
Lsp1109I	GCAGC	3 cut(s)	762, 874, 892
LweI	GCATC	1 cut(s)	917
MaeI	CTAG	7 cut(s)	134, 188, 363, 468, 837, 1011, 1015
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	631, 681
MboI	GATC	2 cut(s)	629, 679
MboII	GAAGA	9 cut(s)	179, 182, 185, 188, 277, 537, 540, 898, 938
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	227, 423
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	6 cut(s)	53, 126, 356, 702, 795, 807
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	2 cut(s)	722, 753
MspR9I	CCNGG	3 cut(s)	243, 495, 787
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	80, 725
MvaI	CCWGG	3 cut(s)	243, 495, 787
MwoI	GCNNNNNNNGC	2 cut(s)	227, 304
NdeII	GATC	2 cut(s)	629, 679
NlaIII	CATG	7 cut(s)	65, 281, 289, 523, 860, 869, 950
NlaIV	GGNNCC	3 cut(s)	491, 751, 821
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	2 cut(s)	65, 281
PagI	TCATGA	2 cut(s)	856, 946
PceI	AGGCCT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	2 cut(s)	80, 725
PfeI	GAWTC	6 cut(s)	144, 202, 268, 410, 524, 950
PkrI	GCNGC	4 cut(s)	193, 777, 864, 907
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PshBI	ATTAAT	2 cut(s)	702, 807
Psp6I	CCWGG	3 cut(s)	241, 493, 785
PspGI	CCWGG	3 cut(s)	241, 493, 785
PspN4I	GGNNCC	3 cut(s)	491, 751, 821
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	6 cut(s)	460, 472, 766, 821, 835, 896
RsaNI	GTAC	6 cut(s)	459, 471, 765, 820, 834, 895
RseI	CAYNNNNRTG	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	550
SaqAI	TTAA	6 cut(s)	53, 126, 356, 702, 795, 807
SatI	GCNGC	4 cut(s)	192, 776, 863, 906
Sau3AI	GATC	2 cut(s)	629, 679
ScaI	AGTACT	4 cut(s)	460, 472, 766, 835
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	243, 495, 787
SfaNI	GCATC	1 cut(s)	917
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SpeI	ACTAGT	2 cut(s)	467, 836
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	3 cut(s)	42, 191, 614
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	7 cut(s)	134, 188, 363, 468, 837, 1011, 1015
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	241, 493, 785
TaaI	ACNGT	2 cut(s)	237, 458
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	5 cut(s)	9, 80, 377, 602, 960
TatI	WGTACW	4 cut(s)	458, 470, 764, 833
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	6 cut(s)	144, 202, 268, 410, 524, 950
Tru1I	TTAA	6 cut(s)	53, 126, 356, 702, 795, 807
Tru9I	TTAA	6 cut(s)	53, 126, 356, 702, 795, 807
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	775, 862, 905
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	6 cut(s)	508, 573, 683, 845, 942, 973
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	278
VspI	ATTAAT	2 cut(s)	702, 807
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	2 cut(s)	65, 281
XspI	CTAG	7 cut(s)	134, 188, 363, 468, 837, 1011, 1015
ZrmI	AGTACT	4 cut(s)	460, 472, 766, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.