Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015543

Physical Location & Seq

Genomic Coordinates Forward (+)

13486884 .. 13489085

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTGAGACTATGTGTCCAGTGCTTATCAATCATAGGCCTTTCGAACCCAGCACTACCTTGAACAGCTCCCATCACTCATCCTTCATGGACCAAAACCCTATTGTCGACACCATTGTGGCTGTCGATGATATTGAAATCCCCACAGTTGATTTCTCTGTGCTACTCTCTGATGATCTTGAAAAAAGATCCAAGGCTATTGAAAACATCGGCCATGTCTGCGAGGACTTTGGCTTCTTCTATCTGGTTAATCATGGGGTGTCAGATGAGGTATTTGAGAGTGTTTTCAAAGGAATAACTGACTTCTTCAATCCATCGGAAATCGAGGATCGGAAGCAGTATGAGAAAAAGAATCCAACAGATAGAATCCGATGGGGTCTTCGATCTTCTCTTGGGGAGAATAGAGAATATCTCAAGGTGATTGCACATCCTGAGCACCACTGTCCTACTAAACCAGCTGGTTTCAGTGAGGCTATGGAAGAATATTTCGAAAAACTGAGAGTTATAGTAAATGGTTTGGGAAAGGCAGTCTCAAAGGCCATGGGATTTGAAGAATGCTACATAGAGAAAGCTTTTAAGCTCAACTCAGGGTTCGATATGTCTGCTATGAACTTATATCCACCCAATTTCAGATCAAAAGGTTCTATTGGTGTGCCTAACCATACTGATCCTGGCTTCTTTGTTTCGCTCATTCAAGACGTGAACAGTGGCCTGCAAATACTATCCCATAAGGGAGACTGGATCAATGTTAACATGCCCCGTAATGCCATTTTCATAAACCTTGGGGATCATCTTGAGATTTTAACAAATGGGAAGTACAAGAGCCATGTTCATCGTGTGGTTGTAAACAATAACAAAGTGAAGAGGATCTCAGTGGCCACACTCCATGGACCTTCGTTGGACTCATTTGTGTCTCCGGCACCAGAGTTTGTTGATGAGTCTCACCCTCCGATATATCGCGGAATGACGTACAAGCAATCCTTGGAGGCCAACGGCGGCGACGAGATAGATGTTCAATCGTGCCTTGAACAAATTCGGATCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.23

Weight (kDa)

5.46

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 120	2.6e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	200 - 297	5.5e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15310 FvH4_2g15312
malus_domestica	MD05G1008900.v1.1
prunus_persica	Prupe.8G011000_v2.0.a1 Prupe.8G011200_v2.0.a1
pyrus_communis	pycom05g00460
rosa_chinensis	RchiOBHm_Chr6g0278051
rosa_laevigata	RLG00000013242
rosa_multiflora	Rmu_sc0000791.1_g000018
rosa_roxburghii	Rroxscaffold_7G00190560
rosa_rugosa	Rorug06G0114500
rosa_samantha	Rh6AG224300 Rh6BG228300 Rh6CG230700 Rh6DG221800
rosa_wichuraiana	Rw6G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	960
AciI	CCGC	2 cut(s)	960, 996
AclWI	GGATC	7 cut(s)	183, 336, 662, 749, 795, 875, 1046
AcoI	YGGCCR	2 cut(s)	211, 876
AcsI	RAATTY	1 cut(s)	1032
AfaI	GTAC	2 cut(s)	818, 971
AhdI	GACNNNNNGTC	1 cut(s)	15
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	670
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	69, 458, 572, 580
AluI	AGCT	4 cut(s)	69, 458, 572, 580
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	5 cut(s)	2, 535, 729, 918, 945
AlwI	GGATC	7 cut(s)	183, 336, 662, 749, 795, 875, 1046
AoxI	GGCC	6 cut(s)	38, 211, 537, 709, 876, 987
ApoI	RAATTY	1 cut(s)	1032
Asp700I	GAANNNNTTC	1 cut(s)	1032
AspS9I	GGNCC	2 cut(s)	91, 890
AsuHPI	GGTGA	2 cut(s)	430, 935
AsuII	TTCGAA	2 cut(s)	45, 489
AvaII	GGWCC	2 cut(s)	91, 890
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	3 cut(s)	81, 322, 366
BceAI	ACGGC	1 cut(s)	1009
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	1 cut(s)	672
BcoDI	GTCTC	5 cut(s)	2, 535, 729, 918, 945
BisI	GCNGC	1 cut(s)	997
BlsI	GCNGC	1 cut(s)	998
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	91, 890
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	91, 890
BmiI	GGNNCC	1 cut(s)	921
BmrFI	CCNGG	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	2 cut(s)	45, 489
BpuEI	CTTGAG	2 cut(s)	398, 815
BsaJI	CCNNGG	5 cut(s)	192, 540, 781, 886, 981
Bse1I	ACTGG	2 cut(s)	20, 743
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	5 cut(s)	192, 540, 781, 886, 981
BseGI	GGATG	2 cut(s)	80, 427
BseMII	CTCAG	4 cut(s)	423, 488, 600, 885
BseNI	ACTGG	2 cut(s)	20, 743
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	6 cut(s)	40, 213, 539, 711, 878, 989
BshNI	GGYRCC	1 cut(s)	919
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	917
BsmAI	GTCTC	5 cut(s)	2, 535, 729, 918, 945
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	6 cut(s)	40, 213, 539, 711, 878, 989
Bsp119I	TTCGAA	2 cut(s)	45, 489
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp19I	CCATGG	2 cut(s)	540, 886
BspACI	CCGC	2 cut(s)	960, 996
BspANI	GGCC	6 cut(s)	40, 213, 539, 711, 878, 989
BspCNI	CTCAG	4 cut(s)	424, 489, 599, 884
BspFNI	CGCG	1 cut(s)	960
BspLI	GGNNCC	1 cut(s)	921
BspPI	GGATC	7 cut(s)	183, 336, 662, 749, 795, 875, 1046
BspT104I	TTCGAA	2 cut(s)	45, 489
BspT107I	GGYRCC	1 cut(s)	919
BsrI	ACTGG	2 cut(s)	20, 743
BssECI	CCNNGG	5 cut(s)	192, 540, 781, 886, 981
BssT1I	CCWWGG	5 cut(s)	192, 540, 781, 886, 981
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	148, 443, 707
Bst6I	CTCTTC	1 cut(s)	857
BstBI	TTCGAA	2 cut(s)	45, 489
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	5 cut(s)	6, 432, 497, 586, 871
BstDSI	CCRYGG	2 cut(s)	540, 886
BstF5I	GGATG	2 cut(s)	80, 427
BstFNI	CGCG	1 cut(s)	960
BstMAI	GTCTC	5 cut(s)	2, 535, 729, 918, 945
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	960
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	188, 867
BstYI	RGATCY	2 cut(s)	188, 867
BsuRI	GGCC	6 cut(s)	40, 213, 539, 711, 878, 989
BtgI	CCRYGG	2 cut(s)	540, 886
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	80, 427
BtsIMutI	CAGTG	5 cut(s)	27, 439, 472, 712, 879
Cac8I	GCNNGC	1 cut(s)	713
Cfr13I	GGNCC	2 cut(s)	91, 890
Csp6I	GTAC	2 cut(s)	817, 970
CviAII	CATG	7 cut(s)	88, 215, 254, 541, 754, 827, 887
CviQI	GTAC	2 cut(s)	817, 970
DdeI	CTNAG	5 cut(s)	6, 432, 497, 586, 871
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	211, 876
Eam1104I	CTCTTC	1 cut(s)	857
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	857
Eco130I	CCWWGG	5 cut(s)	192, 540, 781, 886, 981
Eco147I	AGGCCT	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	91, 890
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	5 cut(s)	192, 540, 781, 886, 981
ErhI	CCWWGG	5 cut(s)	192, 540, 781, 886, 981
FaeI	CATG	7 cut(s)	91, 218, 257, 544, 757, 830, 890
FalI	AAGNNNNNCTT	2 cut(s)	965, 997
FatI	CATG	7 cut(s)	87, 214, 253, 540, 753, 826, 886
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	997
FokI	GGATG	2 cut(s)	67, 414
Fsp4HI	GCNGC	1 cut(s)	997
GluI	GCNGC	1 cut(s)	997
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	6 cut(s)	40, 213, 539, 711, 878, 989
HapII	CCGG	1 cut(s)	917
Hin1II	CATG	7 cut(s)	91, 218, 257, 544, 757, 830, 890
HincII	GTYRAC	2 cut(s)	109, 751
HindII	GTYRAC	2 cut(s)	109, 751
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	4 cut(s)	352, 366, 902, 938
HpaI	GTTAAC	1 cut(s)	751
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	2 cut(s)	430, 935
Hpy166II	GTNNAC	4 cut(s)	109, 703, 751, 847
Hpy188I	TCNGA	8 cut(s)	172, 265, 319, 333, 371, 632, 951, 1038
Hpy188III	TCNNGA	4 cut(s)	179, 431, 695, 794
Hpy8I	GTNNAC	4 cut(s)	109, 703, 751, 847
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	2 cut(s)	94, 903
HpyCH4III	ACNGT	3 cut(s)	148, 443, 707
HpyCH4IV	ACGT	2 cut(s)	699, 968
HpyCH4V	TGCA	2 cut(s)	425, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	5 cut(s)	6, 432, 497, 586, 871
HpySE526I	ACGT	2 cut(s)	699, 968
Hsp92II	CATG	7 cut(s)	91, 218, 257, 544, 757, 830, 890
KspAI	GTTAAC	1 cut(s)	751
LmnI	GCTCC	1 cut(s)	74
MaeII	ACGT	2 cut(s)	699, 968
MboII	GAAGA	7 cut(s)	229, 298, 371, 378, 491, 563, 874
MflI	RGATCY	2 cut(s)	188, 867
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	2 cut(s)	625, 1032
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	2 cut(s)	896, 947
MmeI	TCCRAC	2 cut(s)	380, 879
MnlI	CCTC	7 cut(s)	217, 262, 319, 463, 858, 957, 979
Mox20I	TGGCCA	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	1032
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	4 cut(s)	249, 576, 750, 803
MslI	CAYNNNNRTG	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	672
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	2 cut(s)	540, 886
NlaIII	CATG	7 cut(s)	91, 218, 257, 544, 757, 830, 890
NlaIV	GGNNCC	1 cut(s)	921
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	2 cut(s)	45, 489
OliI	CACNNNNGTG	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	1032
PfeI	GAWTC	2 cut(s)	352, 366
PkrI	GCNGC	1 cut(s)	998
PleI	GAGTC	2 cut(s)	896, 946
PpsI	GAGTC	2 cut(s)	896, 946
Psp6I	CCWGG	1 cut(s)	670
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	921
PspPI	GGNCC	2 cut(s)	91, 890
PsuI	RGATCY	2 cut(s)	188, 867
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	818, 971
RsaNI	GTAC	2 cut(s)	817, 970
RseI	CAYNNNNRTG	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	249, 576, 750, 803
SatI	GCNGC	1 cut(s)	997
Sau96I	GGNCC	2 cut(s)	91, 890
SchI	GAGTC	2 cut(s)	896, 947
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	438
SfuI	TTCGAA	2 cut(s)	45, 489
SinI	GGWCC	2 cut(s)	91, 890
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	413, 794
SmoI	CTYRAG	2 cut(s)	413, 794
Sse9I	AATT	2 cut(s)	625, 1032
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	960, 996
SspI	AATATT	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	5 cut(s)	192, 540, 781, 886, 981
TaaI	ACNGT	3 cut(s)	148, 443, 707
TaiI	ACGT	2 cut(s)	702, 971
TaqI	TCGA	8 cut(s)	45, 108, 126, 324, 382, 489, 594, 1041
TasI	AATT	2 cut(s)	625, 1032
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	1 cut(s)	999
TfiI	GAWTC	2 cut(s)	352, 366
Tru1I	TTAA	4 cut(s)	249, 576, 750, 803
Tru9I	TTAA	4 cut(s)	249, 576, 750, 803
TscAI	CASTG	5 cut(s)	27, 446, 472, 712, 879
TspDTI	ATGAA	4 cut(s)	76, 623, 763, 821
TspRI	CASTG	5 cut(s)	27, 446, 472, 712, 879
VpaK11BI	GGWCC	2 cut(s)	91, 890
XapI	RAATTY	1 cut(s)	1032
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.