FvH4_2g15312

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015543
Physical Location & Seq
Forward (+)
13491226 .. 13492819
1594 bp
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UTR
Exon/CDS
Intron
FvH4_2g15312.t1

Sequence Viewer

Length: 456 bp
ATGGAAGAATATTTCAAAAGACTGAGAGTTATAGTAAAGTGTTTGGGAAAGGCAATTTCAAAGGCCATGGGATTTGAAGAATGCTACATCGAAAAAGCTTTTAAGCTCAACTCAGGGTTCGATGTGTCTGCCATGAACTTATACCCACCCAATTTCAGATCAAAAGGTTCTATTGGTGTGCCTAACCATACTGATCCTGGCTTCTTCGTTTCGCTCATCCAAGACGTGAATGGTGGCCTGCAAATACTATCCCATAAGGGAGACTGGATCAATGTTAACATGCCCCCTAATGCCATTTTCATAAGCCTTGGGGATCATCTCGAGATTTTAACAAATGGGAAATACAAGAGCCATGTTCATTGGGAAACCAAAGCCCCCACGAACCCTAGAGAGAGCAAAGAGAGCAAAACACCAAAGAGAGTACGAACCCTCCGGCAGCGTTGTCGGACGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

9.65

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 42 - 120 3.9e-18 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015543)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15310 FvH4_2g15312
malus_domestica MD05G1008900.v1.1
prunus_persica Prupe.8G011000_v2.0.a1 Prupe.8G011200_v2.0.a1
pyrus_communis pycom05g00460
rosa_chinensis RchiOBHm_Chr6g0278051
rosa_laevigata RLG00000013242
rosa_multiflora Rmu_sc0000791.1_g000018
rosa_roxburghii Rroxscaffold_7G00190560
rosa_rugosa Rorug06G0114500
rosa_samantha Rh6AG224300 Rh6BG228300 Rh6CG230700 Rh6DG221800
rosa_wichuraiana Rw6G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 188, 275, 321
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 3 cut(s) 16, 60, 77
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 98, 106
AluI AGCT 2 cut(s) 98, 106
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 3 cut(s) 188, 275, 321
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 63, 235
ApeKI GCWGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 320
BbvI GCAGC 1 cut(s) 448
BcgI CGANNNNNNTGC 3 cut(s) 110, 144, 425
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 66, 307
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 66, 307
BseGI GGATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 14, 126
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 65, 237
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 65, 237
BsoBI CYCGRG 1 cut(s) 320
Bsp143I GATC 4 cut(s) 158, 193, 267, 313
Bsp19I CCATGG 1 cut(s) 66
BspANI GGCC 2 cut(s) 65, 237
BspCNI CTCAG 2 cut(s) 15, 125
BspPI GGATC 3 cut(s) 188, 275, 321
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 66, 307
BssMI GATC 4 cut(s) 158, 193, 267, 313
BssT1I CCWWGG 2 cut(s) 66, 307
Bst2UI CCWGG 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 23, 112
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 4 cut(s) 161, 196, 270, 316
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 4 cut(s) 158, 193, 267, 313
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 448
BsuRI GGCC 2 cut(s) 65, 237
BtgI CCRYGG 1 cut(s) 66
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 422
CviAII CATG 4 cut(s) 67, 133, 280, 353
CviJI RGCY 8 cut(s) 65, 98, 106, 201, 237, 306, 351, 374
CviKI_1 RGCY 8 cut(s) 65, 98, 106, 201, 237, 306, 351, 374
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 2 cut(s) 23, 112
DpnI GATC 4 cut(s) 160, 195, 269, 315
DpnII GATC 4 cut(s) 158, 193, 267, 313
Eco130I CCWWGG 2 cut(s) 66, 307
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 66, 307
ErhI CCWWGG 2 cut(s) 66, 307
FaeI CATG 4 cut(s) 70, 136, 283, 356
FaiI YATR 9 cut(s) 32, 68, 134, 142, 189, 255, 281, 302, 354
FatI CATG 4 cut(s) 66, 132, 279, 352
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 1 cut(s) 387
GluI GCNGC 1 cut(s) 437
HaeIII GGCC 2 cut(s) 65, 237
HapII CCGG 1 cut(s) 433
Hin1II CATG 4 cut(s) 70, 136, 283, 356
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 96
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 158, 447
Hpy188III TCNNGA 2 cut(s) 320, 322
Hpy8I GTNNAC 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 2 cut(s) 23, 112
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 70, 136, 283, 356
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 158, 193, 267, 313
LpnPI CCDG 6 cut(s) 99, 183, 210, 250, 251, 446
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 225
MalI GATC 4 cut(s) 160, 195, 269, 315
MboI GATC 4 cut(s) 158, 193, 267, 313
MboII GAAGA 3 cut(s) 17, 89, 196
MluCI AATT 2 cut(s) 54, 151
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 1 cut(s) 440
MseI TTAA 3 cut(s) 102, 276, 329
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 402
NcoI CCATGG 1 cut(s) 66
NdeII GATC 4 cut(s) 158, 193, 267, 313
NlaIII CATG 4 cut(s) 70, 136, 283, 356
NspI RCATGY 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 320
PctI GAATGC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 102, 276, 329
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 4 cut(s) 158, 193, 267, 313
ScrFI CCNGG 1 cut(s) 198
SetI ASST 4 cut(s) 100, 108, 169, 228
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 54, 151
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 2 cut(s) 66, 307
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 90, 120, 321
TasI AATT 2 cut(s) 54, 151
Tru1I TTAA 3 cut(s) 102, 276, 329
Tru9I TTAA 3 cut(s) 102, 276, 329
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 149, 289, 347
XceI RCATGY 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 2 cut(s) 194, 227
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.