Prupe.8G011000_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015543
Physical Location & Seq
Forward (+)
895262 .. 898388
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G011000.1

Sequence Viewer

Length: 1002 bp
ATGGCTAAAACTGCTTCTGTAGTATTGACCCAAAACCTTTCTGATACCAAAAGGACCACCTCCTTTAATCATTCAGCTAATGATGATGAAATCCCCACCATTGATTACAGCATGCTGATCTGCTCTAATGATCCTGATCAACGACTCAAAGCCCTCCAATACCTTGCCTATGTCTGCGAGGAGTACGGCTTTTTCTATCTGGTAAATCATGGGGTGCCCGATAGCGTAATTGAGAGAGCACTAAATGGGATTTCCGATTTCTTTAATCTGACGGAGGAGGAAAAGATGGATTATGAGAAGAAGGATTCAACGGATAGGATCAGATGGGGGCTAGGGTTCTCACCCGGGGACCATGAAGCTGTCAAGAGGGAGTATCTCAAGGTGCTCCCACATCCAAAGTTTGAAGGCCCTGCTAAACCAGCTGGTTTCAGGGAGGCCTTGGAAGATTATTACCAAAGGAATCGAGAGGTGATAATTAATTTGGCTAAAGCAGTATCGAAAACATTGGGATTTGAAGAAAATTACTTAGAGAAGGAATTTGAGCTGGAAACTGGGGCTGATGTTTCTGCTATGAACGTGTATCCGCCCGGGTTTAAACCCAACACTCAAATCGGTTTGCCGGCTCATTATGACCCTGGCTACCTTGTTTCCCTTGTACAAAACGTCAACGGTGGTCTCCAACTAAACTATAAACAAAAGTGGATCAATGTTGATATGCCTTCCAATGCCCTTTTCATTAATATTGGGGATCATGTTGAGGTTTTAACAAATGGGAAGTACAAGAGTCCTATGCATCGTGTGATCCTGAACAACGAGGTGAGAAGAGTCTCTGTGGCCACAGTCCATGGACCATCACTTGACACATTTGTGAAACCAGCTCCAGAGTTTGTGGGCGAGTCTCACCCACCAGCATACCGAGGGATGATCTACAAGGACTCCTTGGAAGCCAATGGTTACCATGAGATCGATGGAAAATCATGCATAGCACAACTTCGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

334

Amino Acids

37.6

Weight (kDa)

5.43

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015543)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15310 FvH4_2g15312
malus_domestica MD05G1008900.v1.1
prunus_persica Prupe.8G011000_v2.0.a1 Prupe.8G011200_v2.0.a1
pyrus_communis pycom05g00460
rosa_chinensis RchiOBHm_Chr6g0278051
rosa_laevigata RLG00000013242
rosa_multiflora Rmu_sc0000791.1_g000018
rosa_roxburghii Rroxscaffold_7G00190560
rosa_rugosa Rorug06G0114500
rosa_samantha Rh6AG224300 Rh6BG228300 Rh6CG230700 Rh6DG221800
rosa_wichuraiana Rw6G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 1 cut(s) 584
AclWI GGATC 5 cut(s) 125, 326, 710, 756, 796
AcoI YGGCCR 1 cut(s) 834
AcsI RAATTY 1 cut(s) 536
AfaI GTAC 3 cut(s) 185, 657, 779
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 3 cut(s) 309, 404, 515
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AleI CACNNNNGTG 1 cut(s) 866
AluBI AGCT 5 cut(s) 77, 359, 422, 544, 878
AluI AGCT 5 cut(s) 77, 359, 422, 544, 878
Alw21I GWGCWC 2 cut(s) 241, 387
Alw26I GTCTC 3 cut(s) 680, 832, 903
AlwI GGATC 5 cut(s) 125, 326, 710, 756, 796
Ama87I CYCGRG 2 cut(s) 344, 587
AoxI GGCC 3 cut(s) 406, 435, 834
ApoI RAATTY 1 cut(s) 536
AseI ATTAAT 2 cut(s) 477, 738
AspS9I GGNCC 4 cut(s) 54, 349, 407, 848
AsuC2I CCSGG 4 cut(s) 345, 346, 588, 589
AsuHPI GGTGA 4 cut(s) 333, 481, 829, 893
AvaI CYCGRG 2 cut(s) 344, 587
AvaII GGWCC 3 cut(s) 54, 349, 848
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 836
BanI GGYRCC 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 241, 387
BccI CCATC 4 cut(s) 280, 318, 859, 962
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 591
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 4 cut(s) 345, 346, 588, 589
BcoDI GTCTC 3 cut(s) 680, 832, 903
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 591
Bme1390I CCNGG 5 cut(s) 345, 346, 588, 589, 636
Bme18I GGWCC 3 cut(s) 54, 349, 848
BmeT110I CYCGRG 2 cut(s) 344, 587
BmgT120I GGNCC 4 cut(s) 54, 349, 407, 848
BmiI GGNNCC 2 cut(s) 216, 350
BmrFI CCNGG 5 cut(s) 345, 346, 588, 589, 636
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 802
BmuI ACTGGG 1 cut(s) 561
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 4 cut(s) 345, 346, 588, 589
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 8 cut(s) 344, 345, 438, 587, 634, 844, 916, 939
BsaXI ACNNNNNCTCC 2 cut(s) 920, 950
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 1 cut(s) 636
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 8 cut(s) 344, 345, 438, 587, 634, 844, 916, 939
BseGI GGATG 2 cut(s) 391, 927
BseJI GATNNNNATC 1 cut(s) 135
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 2 cut(s) 194, 290
BseSI GKGCMC 1 cut(s) 219
BshFI GGCC 3 cut(s) 408, 437, 836
BshNI GGYRCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 966
BsiHKAI GWGCWC 2 cut(s) 241, 387
BsiHKCI CYCGRG 2 cut(s) 344, 587
BsiSI CCGG 3 cut(s) 345, 588, 620
BslFI GGGAC 1 cut(s) 362
BsmAI GTCTC 3 cut(s) 680, 832, 903
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 408, 437, 836
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 2 cut(s) 344, 587
Bsp1286I GDGCHC 3 cut(s) 219, 241, 387
Bsp1407I TGTACA 1 cut(s) 655
Bsp143I GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
Bsp19I CCATGG 1 cut(s) 844
BspACI CCGC 1 cut(s) 584
BspANI GGCC 3 cut(s) 408, 437, 836
BspDI ATCGAT 1 cut(s) 966
BspLI GGNNCC 2 cut(s) 216, 350
BspPI GGATC 5 cut(s) 125, 326, 710, 756, 796
BspT107I GGYRCC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 655
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 8 cut(s) 344, 345, 438, 587, 634, 844, 916, 939
BssMI GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
BssT1I CCWWGG 3 cut(s) 438, 844, 939
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 2 cut(s) 671, 841
Bst6I CTCTTC 1 cut(s) 817
BstAUI TGTACA 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 113, 621
BstDEI CTNAG 1 cut(s) 526
BstDSI CCRYGG 1 cut(s) 844
BstEII GGTNACC 1 cut(s) 953
BstF5I GGATG 2 cut(s) 391, 927
BstKTI GATC 9 cut(s) 120, 133, 139, 321, 705, 751, 804, 927, 966
BstMAI GTCTC 3 cut(s) 680, 832, 903
BstMBI GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
BstMWI GCNNNNNNNGC 2 cut(s) 11, 419
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 953
BstSCI CCNGG 5 cut(s) 343, 344, 586, 587, 634
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 966
BsuI GTATCC 1 cut(s) 591
BsuRI GGCC 3 cut(s) 408, 437, 836
BsuTUI ATCGAT 1 cut(s) 966
BtgI CCRYGG 1 cut(s) 844
BtsCI GGATG 2 cut(s) 391, 927
Cac8I GCNNGC 2 cut(s) 113, 621
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 4 cut(s) 54, 349, 407, 848
Cfr9I CCCGGG 2 cut(s) 344, 587
ClaI ATCGAT 1 cut(s) 966
Csp6I GTAC 3 cut(s) 184, 656, 778
CviAII CATG 7 cut(s) 112, 209, 353, 752, 845, 959, 978
CviQI GTAC 3 cut(s) 184, 656, 778
DdeI CTNAG 1 cut(s) 526
DpnI GATC 9 cut(s) 119, 132, 138, 320, 704, 750, 803, 926, 965
DpnII GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
DraI TTTAAA 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 817
EarI CTCTTC 1 cut(s) 817
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 3 cut(s) 438, 844, 939
Eco147I AGGCCT 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 680
Eco47I GGWCC 3 cut(s) 54, 349, 848
Eco88I CYCGRG 2 cut(s) 344, 587
Eco91I GGTNACC 1 cut(s) 953
EcoO109I RGGNCCY 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 3 cut(s) 438, 844, 939
EcoT22I ATGCAT 2 cut(s) 795, 983
ErhI CCWWGG 3 cut(s) 438, 844, 939
FaeI CATG 7 cut(s) 115, 212, 356, 755, 848, 962, 981
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FaqI GGGAC 1 cut(s) 362
FatI CATG 7 cut(s) 111, 208, 352, 751, 844, 958, 977
FbaI TGATCA 1 cut(s) 136
FokI GGATG 2 cut(s) 378, 934
FspBI CTAG 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 3 cut(s) 408, 437, 836
HapII CCGG 3 cut(s) 345, 588, 620
Hin1II CATG 7 cut(s) 115, 212, 356, 755, 848, 962, 981
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 7 cut(s) 144, 305, 460, 784, 825, 896, 935
HpaII CCGG 3 cut(s) 345, 588, 620
HphI GGTGA 4 cut(s) 333, 481, 829, 893
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 4 cut(s) 43, 256, 270, 323
Hpy188III TCNNGA 5 cut(s) 134, 364, 464, 805, 881
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 4 cut(s) 295, 398, 526, 729
HpyCH4III ACNGT 2 cut(s) 671, 841
HpyCH4IV ACGT 2 cut(s) 576, 663
HpyCH4V TGCA 2 cut(s) 793, 981
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 419
HpyF3I CTNAG 1 cut(s) 526
HpySE526I ACGT 2 cut(s) 576, 663
Hsp92II CATG 7 cut(s) 115, 212, 356, 755, 848, 962, 981
KroI GCCGGC 1 cut(s) 619
KroNI GCCGGC 1 cut(s) 621
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
LmnI GCTCC 2 cut(s) 390, 883
LweI GCATC 1 cut(s) 802
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 576, 663
MaeIII GTNAC 1 cut(s) 953
MalI GATC 9 cut(s) 119, 132, 138, 320, 704, 750, 803, 926, 965
MboI GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
MboII GAAGA 4 cut(s) 310, 455, 527, 834
MhlI GDGCHC 3 cut(s) 219, 241, 387
MlsI TGGCCA 1 cut(s) 836
MluCI AATT 5 cut(s) 228, 474, 478, 520, 536
MluNI TGGCCA 1 cut(s) 836
MlyI GAGTC 5 cut(s) 138, 793, 834, 905, 929
MmeI TCCRAC 1 cut(s) 703
Mox20I TGGCCA 1 cut(s) 836
Mph1103I ATGCAT 2 cut(s) 795, 983
MroNI GCCGGC 1 cut(s) 619
MscI TGGCCA 1 cut(s) 836
MseI TTAA 6 cut(s) 66, 264, 477, 594, 738, 764
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 3 cut(s) 345, 588, 620
MspR9I CCNGG 5 cut(s) 345, 346, 588, 589, 636
MssI GTTTAAAC 1 cut(s) 595
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 11, 419
NaeI GCCGGC 1 cut(s) 621
NciI CCSGG 4 cut(s) 345, 346, 588, 589
NcoI CCATGG 1 cut(s) 844
NdeII GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
NgoMIV GCCGGC 1 cut(s) 619
NlaIII CATG 7 cut(s) 115, 212, 356, 755, 848, 962, 981
NlaIV GGNNCC 2 cut(s) 216, 350
NsiI ATGCAT 2 cut(s) 795, 983
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 866
PaeI GCATGC 1 cut(s) 115
PceI AGGCCT 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 621
PfeI GAWTC 2 cut(s) 305, 460
PleI GAGTC 5 cut(s) 138, 792, 833, 904, 929
PmeI GTTTAAAC 1 cut(s) 595
PpsI GAGTC 5 cut(s) 138, 792, 833, 904, 929
PshBI ATTAAT 2 cut(s) 477, 738
Psp6I CCWGG 1 cut(s) 634
PspEI GGTNACC 1 cut(s) 953
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 216, 350
PspPI GGNCC 4 cut(s) 54, 349, 407, 848
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 185, 657, 779
RsaNI GTAC 3 cut(s) 184, 656, 778
RseI CAYNNNNRTG 1 cut(s) 866
SaqAI TTAA 6 cut(s) 66, 264, 477, 594, 738, 764
Sau3AI GATC 9 cut(s) 117, 130, 136, 318, 702, 748, 801, 924, 963
Sau96I GGNCC 4 cut(s) 54, 349, 407, 848
SchI GAGTC 5 cut(s) 138, 793, 834, 905, 929
ScrFI CCNGG 5 cut(s) 345, 346, 588, 589, 636
SduI GDGCHC 3 cut(s) 219, 241, 387
SfaNI GCATC 1 cut(s) 802
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 3 cut(s) 54, 349, 848
SmaI CCCGGG 2 cut(s) 346, 589
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 115
Sse9I AATT 5 cut(s) 228, 474, 478, 520, 536
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 1 cut(s) 584
SspI AATATT 1 cut(s) 742
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 5 cut(s) 343, 344, 586, 587, 634
StyI CCWWGG 3 cut(s) 438, 844, 939
TaaI ACNGT 2 cut(s) 671, 841
TaiI ACGT 2 cut(s) 579, 666
TaqI TCGA 3 cut(s) 463, 497, 966
TasI AATT 5 cut(s) 228, 474, 478, 520, 536
TatI WGTACW 2 cut(s) 655, 777
TfiI GAWTC 2 cut(s) 305, 460
Tru1I TTAA 6 cut(s) 66, 264, 477, 594, 738, 764
Tru9I TTAA 6 cut(s) 66, 264, 477, 594, 738, 764
TspDTI ATGAA 4 cut(s) 102, 369, 587, 724
TspGWI ACGGA 2 cut(s) 287, 326
TspMI CCCGGG 2 cut(s) 344, 587
VpaK11BI GGWCC 3 cut(s) 54, 349, 848
VspI ATTAAT 2 cut(s) 477, 738
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XmaI CCCGGG 2 cut(s) 344, 587
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 2 cut(s) 795, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.