FvH4_2g16030

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013460
Physical Location & Seq
Reverse (-)
13989931 .. 13990659
729 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16030.t1

Sequence Viewer

Length: 540 bp
ATGGCGGATCAGTACCAGAAAGAGACCAAAGAGAACCATGCAGCAGCAAAGGTGGAAGAAGAGCCTGCTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGAAGGAAAATGAGAAGCCCCAACCTGAAGAACACAAACACACCACGGCTGAAAAGCTCCACCATCATGATGGCAACGACTCTAGCTCGTCTAGCAGTGACGAAGAAGGTGGGGAGAAGAAAAAGAAGGGACTGAAAGGTAAGATCAAGGAGAAGATCGCCAGCAAAAAGAACGAGGAAGATCACCATTCACCGATTCCCGCTGCAAAGAGCAATGATATCGAGAGTGGAGTTTCAAATGGTCAGGAGAAGAAGGGATTCATAGAGAAAATAAAAGAGAAGCTTCCTGGACAGCACAAGGAAGCTGAAGCCGGTGCTCCTCCTGAGTATCATTCTCCACATGAAGGTGAGCCAAAGGAGAAGAAAGGAATTATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAAAATGAAGAGGAGAAGCCCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

180

Amino Acids

19.98

Weight (kDa)

6.28

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 23 - 132 2.4e-20 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 300
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 147, 426
AfaI GTAC 2 cut(s) 14, 536
AfiI CCNNNNNNNGG 2 cut(s) 71, 443
AgsI TTSAA 2 cut(s) 97, 336
AjnI CCWGG 2 cut(s) 385, 496
AluBI AGCT 5 cut(s) 157, 186, 382, 404, 493
AluI AGCT 5 cut(s) 157, 186, 382, 404, 493
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 41, 44, 302
Asp700I GAANNNNTTC 1 cut(s) 356
AsuHPI GGTGA 3 cut(s) 275, 282, 458
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 53, 56, 289
BccI CCATC 2 cut(s) 164, 171
BceAI ACGGC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 2 cut(s) 387, 498
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 2 cut(s) 183, 192
BisI GCNGC 3 cut(s) 42, 45, 303
BlsI GCNGC 3 cut(s) 43, 46, 304
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 2 cut(s) 387, 498
BmrFI CCNGG 2 cut(s) 387, 498
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 144, 496, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 443
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 2 cut(s) 387, 498
BseDI CCNNGG 3 cut(s) 144, 496, 528
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 71, 443
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 2 cut(s) 408, 533
BseXI GCAGC 3 cut(s) 53, 56, 289
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 71, 443
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 4 cut(s) 7, 243, 255, 280
BspACI CCGC 2 cut(s) 5, 300
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 166
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 144, 496, 528
BssMI GATC 4 cut(s) 7, 243, 255, 280
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 387, 498
Bst6I CTCTTC 2 cut(s) 54, 510
BstC8I GCNNGC 2 cut(s) 66, 262
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 4 cut(s) 10, 246, 258, 283
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 7, 243, 255, 280
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 2 cut(s) 387, 498
BstSCI CCNGG 2 cut(s) 385, 496
BstV1I GCAGC 3 cut(s) 53, 56, 289
BstXI CCANNNNNNTGG 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 66, 262
CciI TCATGA 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 410
Csp6I GTAC 2 cut(s) 13, 535
CviAII CATG 3 cut(s) 38, 167, 440
CviQI GTAC 2 cut(s) 13, 535
DdeI CTNAG 1 cut(s) 423
DpnI GATC 4 cut(s) 9, 245, 257, 282
DpnII GATC 4 cut(s) 7, 243, 255, 280
Eam1104I CTCTTC 2 cut(s) 54, 510
EarI CTCTTC 2 cut(s) 54, 510
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 147, 426
EcoRII CCWGG 2 cut(s) 385, 496
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 3 cut(s) 41, 170, 443
FaiI YATR 5 cut(s) 39, 168, 362, 441, 473
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 37, 166, 439
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 42, 45, 303
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 42, 45, 303
FspBI CTAG 2 cut(s) 183, 192
GluI GCNGC 3 cut(s) 42, 45, 303
HapII CCGG 1 cut(s) 411
Hin1II CATG 3 cut(s) 41, 170, 443
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 179, 295, 357
HpaII CCGG 1 cut(s) 411
HphI GGTGA 3 cut(s) 275, 282, 458
Hpy188III TCNNGA 5 cut(s) 94, 167, 322, 344, 422
HpyAV CCTTC 5 cut(s) 97, 200, 220, 346, 437
HpyCH4V TGCA 2 cut(s) 41, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 3 cut(s) 41, 170, 443
Kzo9I GATC 4 cut(s) 7, 243, 255, 280
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 3 cut(s) 162, 421, 498
Lsp1109I GCAGC 3 cut(s) 53, 56, 289
MaeI CTAG 2 cut(s) 183, 192
MaeIII GTNAC 2 cut(s) 197, 503
MalI GATC 4 cut(s) 9, 245, 257, 282
MboI GATC 4 cut(s) 7, 243, 255, 280
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 1 cut(s) 468
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 3 cut(s) 268, 429, 511
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 3 cut(s) 165, 168, 444
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 2 cut(s) 387, 498
MvaI CCWGG 2 cut(s) 387, 498
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 4 cut(s) 7, 243, 255, 280
NlaIII CATG 3 cut(s) 41, 170, 443
NmuCI GTSAC 1 cut(s) 197
PagI TCATGA 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 295, 357
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 3 cut(s) 43, 46, 304
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 385, 496
PspGI CCWGG 2 cut(s) 385, 496
RsaI GTAC 2 cut(s) 14, 536
RsaNI GTAC 2 cut(s) 13, 535
RseI CAYNNNNRTG 3 cut(s) 165, 168, 444
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 42, 45, 303
Sau3AI GATC 4 cut(s) 7, 243, 255, 280
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 387, 498
SduI GDGCHC 1 cut(s) 418
SmiMI CAYNNNNRTG 3 cut(s) 165, 168, 444
Sse9I AATT 1 cut(s) 468
SsiI CCGC 2 cut(s) 5, 300
SspMI CTAG 2 cut(s) 183, 192
StyD4I CCNGG 2 cut(s) 385, 496
StyI CCWWGG 1 cut(s) 528
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 468
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 2 cut(s) 295, 357
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 3 cut(s) 41, 44, 302
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 349, 456, 528
TspRI CASTG 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 2 cut(s) 183, 192
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.