Rroxscaffold_7G00188790

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013460
Physical Location & Seq
Forward (+)
28537394 .. 28543860
6467 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00188790.1

Sequence Viewer

Length: 495 bp
ATGGCAGATCAGTACGGGAAAGAGATCAAAGAGAACCATGCAGCAGCGAAGGTGGAAGAAGAGCCTGCTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGAAGGAAAATGAGATGCCCCAACCTGAAGAACAGAAGCATACCCTGGCTGAAAAGCTCCACCACCATGATGGCAGCAACTCTAGCTCAGGTAAGATCAAGGAGAAGATCACCGGCAAAAAGGATGAGGACGATGCTTACCATGCACCCGTTCCCGCTGCAAAGAGCAATGATATCCAGAGTGGAGTAACAAATGGTGAGGAGAAGAAGGGATTCATAGAGAAAATTAAAGAAAAGCTTCCTGGACAGCACAAGGAAGCTGAAGTTGGTGCTCCTCCCGAGTATCATGCTCCACACGAAGGTGAGCCAAAGGAGAAAAAAGGAATCATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAGAATGAAGAGGAGAAGCCCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

164

Amino Acids

18.29

Weight (kDa)

5.89

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 35 - 117 5e-10 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 147, 381
AfaI GTAC 2 cut(s) 14, 491
AfiI CCNNNNNNNGG 2 cut(s) 71, 398
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 144, 340, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 5 cut(s) 157, 186, 337, 359, 448
AluI AGCT 5 cut(s) 157, 186, 337, 359, 448
Alw21I GWGCWC 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 377
ApeKI GCWGC 4 cut(s) 41, 44, 174, 257
Asp700I GAANNNNTTC 2 cut(s) 311, 336
AsuHPI GGTGA 3 cut(s) 202, 308, 413
AvaI CYCGRG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 4 cut(s) 53, 56, 186, 244
BccI CCATC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 3 cut(s) 146, 342, 453
BfaI CTAG 1 cut(s) 183
BisI GCNGC 4 cut(s) 42, 45, 175, 258
BlsI GCNGC 4 cut(s) 43, 46, 176, 259
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 3 cut(s) 146, 342, 453
BmeT110I CYCGRG 1 cut(s) 377
BmrFI CCNGG 3 cut(s) 146, 342, 453
BmsI GCATC 2 cut(s) 105, 223
Bpu10I CCTNAGC 1 cut(s) 187
BsaJI CCNNGG 3 cut(s) 144, 451, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 398
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 3 cut(s) 146, 342, 453
BseDI CCNNGG 3 cut(s) 144, 451, 483
BseGI GGATG 2 cut(s) 87, 229
BseLI CCNNNNNNNGG 2 cut(s) 71, 398
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 3 cut(s) 314, 363, 488
BseXI GCAGC 4 cut(s) 53, 56, 186, 244
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 71, 398
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 7, 24, 195, 207
BspACI CCGC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 144, 451, 483
BssMI GATC 4 cut(s) 7, 24, 195, 207
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 146, 342, 453
Bst6I CTCTTC 2 cut(s) 54, 465
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 87, 229
BstKTI GATC 4 cut(s) 10, 27, 198, 210
BstMBI GATC 4 cut(s) 7, 24, 195, 207
BstMWI GCNNNNNNNGC 2 cut(s) 183, 242
BstNI CCWGG 3 cut(s) 146, 342, 453
BstSCI CCNGG 3 cut(s) 144, 340, 451
BstV1I GCAGC 4 cut(s) 53, 56, 186, 244
BstXI CCANNNNNNTGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 87, 229
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 212
Csp6I GTAC 2 cut(s) 13, 490
CviAII CATG 5 cut(s) 38, 167, 242, 386, 427
CviQI GTAC 2 cut(s) 13, 490
DdeI CTNAG 1 cut(s) 187
DpnI GATC 4 cut(s) 9, 26, 197, 209
DpnII GATC 4 cut(s) 7, 24, 195, 207
Eam1104I CTCTTC 2 cut(s) 54, 465
EarI CTCTTC 2 cut(s) 54, 465
Eco130I CCWWGG 1 cut(s) 483
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 147, 381
Eco88I CYCGRG 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 144, 340, 451
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 5 cut(s) 41, 170, 245, 389, 430
FaiI YATR 7 cut(s) 39, 141, 168, 243, 317, 387, 428
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 5 cut(s) 37, 166, 241, 385, 426
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 42, 45, 175, 258
FokI GGATG 2 cut(s) 94, 236
Fsp4HI GCNGC 4 cut(s) 42, 45, 175, 258
FspBI CTAG 1 cut(s) 183
GluI GCNGC 4 cut(s) 42, 45, 175, 258
HapII CCGG 1 cut(s) 213
Hin1II CATG 5 cut(s) 41, 170, 245, 389, 430
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 312, 423
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 202, 308, 413
Hpy188III TCNNGA 3 cut(s) 94, 277, 377
HpyAV CCTTC 4 cut(s) 43, 97, 301, 392
HpyCH4V TGCA 3 cut(s) 41, 245, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 242
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 5 cut(s) 41, 170, 245, 389, 430
Kzo9I GATC 4 cut(s) 7, 24, 195, 207
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 162, 376, 394, 453
Lsp1109I GCAGC 4 cut(s) 53, 56, 186, 244
LweI GCATC 2 cut(s) 105, 223
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 286, 458
MalI GATC 4 cut(s) 9, 26, 197, 209
MboI GATC 4 cut(s) 7, 24, 195, 207
MboII GAAGA 9 cut(s) 68, 71, 109, 112, 140, 217, 316, 445, 482
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 1 cut(s) 324
MnlI CCTC 4 cut(s) 220, 292, 384, 466
MroXI GAANNNNTTC 2 cut(s) 311, 336
MseI TTAA 2 cut(s) 327, 438
MslI CAYNNNNRTG 3 cut(s) 165, 168, 399
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 3 cut(s) 146, 342, 453
MvaI CCWGG 3 cut(s) 146, 342, 453
MwoI GCNNNNNNNGC 2 cut(s) 183, 242
NdeII GATC 4 cut(s) 7, 24, 195, 207
NlaIII CATG 5 cut(s) 41, 170, 245, 389, 430
OliI CACNNNNGTG 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 311, 336
PfeI GAWTC 2 cut(s) 312, 423
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 4 cut(s) 43, 46, 176, 259
Psp6I CCWGG 3 cut(s) 144, 340, 451
PspGI CCWGG 3 cut(s) 144, 340, 451
RsaI GTAC 2 cut(s) 14, 491
RsaNI GTAC 2 cut(s) 13, 490
RseI CAYNNNNRTG 3 cut(s) 165, 168, 399
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 327, 438
SatI GCNGC 4 cut(s) 42, 45, 175, 258
Sau3AI GATC 4 cut(s) 7, 24, 195, 207
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 146, 342, 453
SduI GDGCHC 1 cut(s) 373
SetI ASST 9 cut(s) 54, 127, 159, 188, 193, 339, 361, 403, 450
SfaNI GCATC 2 cut(s) 105, 223
SmiMI CAYNNNNRTG 3 cut(s) 165, 168, 399
Sse9I AATT 1 cut(s) 324
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 144, 340, 451
StyI CCWWGG 1 cut(s) 483
TasI AATT 1 cut(s) 324
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 2 cut(s) 312, 423
Tru1I TTAA 2 cut(s) 327, 438
Tru9I TTAA 2 cut(s) 327, 438
TseI GCWGC 4 cut(s) 41, 44, 174, 257
TspDTI ATGAA 2 cut(s) 304, 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmnI GAANNNNTTC 2 cut(s) 311, 336
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.