MD05G1129100.v1.1

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013460
Physical Location & Seq
Reverse (-)
25312053 .. 25313307
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1129100.v1.1.491

Sequence Viewer

Length: 591 bp
ATGGAAGATCAGTACCCGAAAGAGAGTCAGACACATGCCAAGGGAGCAGAAGAAGAAGCTCAGGGTTGTGGGATGTTTGATTTCTTGAAAAAGAAGGACAATCAGAAACCCCACCAGGAACAGGAGCAGCACAAGCACACTACTCTAGCTGAAAAGCTCCACCACCATGACGGCGACTCTAGCTCGTCTAGCAGTGACGAAGAAGGTGGAGAGAAGAAAAAGAAGGGACTTAAGGGTAAGATCAAGGATAAGATATCAAGTAACAAGGAAGGGGGAGATGCTTGCCACGCATCCGTTCCAGCGACGAATGGACACGCTGATGAGAAGGGATTTGTAGAGAAAACCAAAGACAAGCTTCCGGGACAGCACAAGGAGGCCGAACATGTTGCTGAGGAGAAGGGATTTGTCGAGAAAATCAAGGAAAAGCTTCCGGGAGAGAACAAGAAGGCTGAACATCATGCTCCTGCGGAGTATCATGCTCCGGATGGGCATTCCCACGACAGCGAGGCAAAGAAAGGGATCTTGGAGAAGATTAAGGACAAGTTCCCTGGGAGTCACAAGACCGAAGAGGAGAAGCACAAGGAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

197

Amino Acids

21.83

Weight (kDa)

6.31

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 24 - 123 4.9e-15 Dehydrin
Dehydrin PF00257 132 - 186 4.4e-11 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 527
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 114, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 6 cut(s) 59, 149, 157, 183, 355, 427
AluI AGCT 6 cut(s) 59, 149, 157, 183, 355, 427
AlwI GGATC 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 426
AsuC2I CCSGG 2 cut(s) 360, 432
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 116, 549
BcnI CCSGG 2 cut(s) 360, 432
BfaI CTAG 3 cut(s) 146, 180, 189
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 4 cut(s) 116, 360, 432, 549
BmrFI CCNGG 4 cut(s) 116, 360, 432, 549
BmsI GCATC 2 cut(s) 268, 299
Bpu10I CCTNAGC 2 cut(s) 60, 390
BpuMI CCSGG 2 cut(s) 360, 432
BsaJI CCNNGG 3 cut(s) 39, 547, 548
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 2 cut(s) 116, 549
BseDI CCNNGG 3 cut(s) 39, 547, 548
BseGI GGATG 3 cut(s) 78, 290, 490
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 74, 381
BseRI GAGGAG 2 cut(s) 407, 584
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 3 cut(s) 359, 431, 482
BslFI GGGAC 2 cut(s) 240, 375
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 240, 375
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 3 cut(s) 7, 240, 519
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 2 cut(s) 73, 382
BspEI TCCGGA 1 cut(s) 481
BspPI GGATC 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 230
BssECI CCNNGG 3 cut(s) 39, 547, 548
BssMI GATC 3 cut(s) 7, 240, 519
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 116, 549
Bst6I CTCTTC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 60, 390
BstF5I GGATG 3 cut(s) 78, 290, 490
BstKTI GATC 3 cut(s) 10, 243, 522
BstMBI GATC 3 cut(s) 7, 240, 519
BstMWI GCNNNNNNNGC 5 cut(s) 44, 133, 180, 189, 287
BstNI CCWGG 2 cut(s) 116, 549
BstNSI RCATGY 2 cut(s) 38, 386
BstSCI CCNGG 4 cut(s) 114, 358, 430, 547
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 3 cut(s) 78, 290, 490
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 13
CviAII CATG 5 cut(s) 35, 167, 383, 458, 476
CviJI RGCY 8 cut(s) 59, 149, 157, 183, 355, 377, 427, 449
CviKI_1 RGCY 8 cut(s) 59, 149, 157, 183, 355, 377, 427, 449
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 60, 390
DpnI GATC 3 cut(s) 9, 242, 521
DpnII GATC 3 cut(s) 7, 240, 519
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 39
Eco32I GATATC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 114, 547
EcoRV GATATC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 38, 170, 386, 461, 479
FaiI YATR 5 cut(s) 36, 168, 384, 459, 477
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 240, 375
FatI CATG 5 cut(s) 34, 166, 382, 457, 475
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 3 cut(s) 85, 277, 497
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 3 cut(s) 146, 180, 189
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 377
HapII CCGG 3 cut(s) 359, 431, 482
Hin1II CATG 5 cut(s) 38, 170, 386, 461, 479
HindIII AAGCTT 2 cut(s) 353, 425
HinfI GANTC 3 cut(s) 25, 176, 553
HpaII CCGG 3 cut(s) 359, 431, 482
Hpy188I TCNGA 2 cut(s) 30, 105
Hpy188III TCNNGA 3 cut(s) 85, 409, 482
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 7 cut(s) 88, 197, 217, 263, 319, 391, 439
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 133, 180, 189, 287
HpyF3I CTNAG 2 cut(s) 60, 390
Hsp92II CATG 5 cut(s) 38, 170, 386, 461, 479
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 7, 240, 519
LmnI GCTCC 5 cut(s) 44, 124, 162, 466, 484
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 268, 299
MaeI CTAG 3 cut(s) 146, 180, 189
MaeIII GTNAC 3 cut(s) 194, 260, 554
MalI GATC 3 cut(s) 9, 242, 521
MboI GATC 3 cut(s) 7, 240, 519
MboII GAAGA 7 cut(s) 17, 62, 65, 212, 226, 541, 578
MflI RGATCY 1 cut(s) 519
MluCI AATT 1 cut(s) 586
MlyI GAGTC 3 cut(s) 34, 170, 562
MnlI CCTC 4 cut(s) 367, 385, 499, 562
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 231, 534
MslI CAYNNNNRTG 2 cut(s) 165, 318
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 3 cut(s) 359, 431, 482
MspR9I CCNGG 4 cut(s) 116, 360, 432, 549
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 116, 549
MwoI GCNNNNNNNGC 5 cut(s) 44, 133, 180, 189, 287
NciI CCSGG 2 cut(s) 360, 432
NdeII GATC 3 cut(s) 7, 240, 519
NlaIII CATG 5 cut(s) 38, 170, 386, 461, 479
NmuCI GTSAC 2 cut(s) 194, 554
NspI RCATGY 2 cut(s) 38, 386
PasI CCCWGGG 1 cut(s) 548
PciI ACATGT 1 cut(s) 382
PctI GAATGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 426
PfoI TCCNGGA 2 cut(s) 358, 430
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 3 cut(s) 33, 170, 561
PpsI GAGTC 3 cut(s) 33, 170, 561
PscI ACATGT 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 114, 547
PspGI CCWGG 2 cut(s) 114, 547
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 165, 318
SaqAI TTAA 2 cut(s) 231, 534
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 3 cut(s) 7, 240, 519
SchI GAGTC 3 cut(s) 34, 170, 562
ScrFI CCNGG 4 cut(s) 116, 360, 432, 549
SetI ASST 7 cut(s) 61, 151, 159, 185, 208, 357, 429
SfaNI GCATC 2 cut(s) 268, 299
SmiMI CAYNNNNRTG 2 cut(s) 165, 318
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 586
SsiI CCGC 1 cut(s) 467
SspMI CTAG 3 cut(s) 146, 180, 189
StyD4I CCNGG 4 cut(s) 114, 358, 430, 547
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 408
TaqII GACCGA 1 cut(s) 578
TasI AATT 1 cut(s) 586
Tru1I TTAA 2 cut(s) 231, 534
Tru9I TTAA 2 cut(s) 231, 534
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 194, 554
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 2 cut(s) 194, 554
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 230
XceI RCATGY 2 cut(s) 38, 386
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 3 cut(s) 146, 180, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.