RLG00000013133

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013460
Physical Location & Seq
Forward (+)
26661066 .. 26663017
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013133

Sequence Viewer

Length: 879 bp
ATGGCTTCAGATAGTTTTTCGCCTTTTCTTTGGAGGACTCGCATTCTTTGTGGCAGTGGCCTTGCCATTCCTGGGAGACCTATCACCCCTAATTGGAGCAGTTACATCGCAGCTTGGAATTTGGCTGACAAAGGTTTGGTTGCCAACTTCTTCAAGCCAAGTGACAAATGTGGATTGGAAATTTGGAGTTTCGAGCTCAAGGTCACCGACGACCAGAACTTCGATGCCGACAATCACTGGACCCTGAAACTTCAAGTTATTCTGCACACCGTCCGCACCGACCCTTCTTCGTTTTCTCTTCCCCATTGGTCGATACGAGAGCCCATCACTAGCATTATGGCAGATCAGTACCGGAAAGAGATCAAAGAGAACCATGCAGCAGCGAAGGTGGAAGGAGAGCCTGCTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGAAGGAAAATGAGATGCCCCAACCTGAAGAACAGAAGCATACCCTGGCTGAAAAGCTTCACCACCATGATGGCAGCAACTCTAGCTCATCTAGCAGTGATGAAGAAGGCGGGGAGAAGAAAAAGAAGGGACTGAAGGGTAAGATCAAGGGGAAGATCACCGGCAAAAAGGATGAGGAAGATGCTTACCATGCACCCATTCCCGCTGCAAAGAGCAATGATATCGAGAGTGGAGTAACAAATGGTGAGGAGAAGAAGGGATTCATAGAGAAAATTAAAGAAAAGCTTCCTGGACAGCACAAGGAAGCTGAAGTTGGTGCTCCTCCCGAGTATCATGCTCCACACGAAGGTGAGCCAAAGGACAAGAAAGGAATCATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAGAATGAAGAGGAGAAGCCCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

293

Amino Acids

32.63

Weight (kDa)

6.33

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 136 - 245 2.9e-21 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 274, 546, 639
AcsI RAATTY 2 cut(s) 118, 180
AcuI CTGAAG 3 cut(s) 483, 590, 765
AfaI GTAC 2 cut(s) 350, 875
AfiI CCNNNNNNNGG 4 cut(s) 72, 93, 407, 782
AgsI TTSAA 3 cut(s) 154, 254, 433
AjnI CCWGG 4 cut(s) 70, 480, 724, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AleI CACNNNNGTG 1 cut(s) 783
AluBI AGCT 7 cut(s) 113, 196, 493, 522, 721, 743, 832
AluI AGCT 7 cut(s) 113, 196, 493, 522, 721, 743, 832
Alw21I GWGCWC 2 cut(s) 198, 757
Alw26I GTCTC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 5 cut(s) 110, 377, 380, 510, 641
ApoI RAATTY 2 cut(s) 118, 180
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
Asp700I GAANNNNTTC 3 cut(s) 492, 695, 720
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 6 cut(s) 76, 196, 488, 586, 692, 797
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 2 cut(s) 198, 324
Bbv12I GWGCWC 2 cut(s) 198, 757
BbvI GCAGC 5 cut(s) 122, 389, 392, 522, 628
BccI CCATC 2 cut(s) 332, 500
BcgI CGANNNNNNTGC 6 cut(s) 88, 122, 640, 674, 752, 786
BciT130I CCWGG 4 cut(s) 72, 482, 726, 837
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 330, 519, 528
BisI GCNGC 5 cut(s) 111, 378, 381, 511, 642
BlsI GCNGC 5 cut(s) 112, 379, 382, 512, 643
BmcAI AGTACT 1 cut(s) 875
Bme1390I CCNGG 4 cut(s) 72, 482, 726, 837
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 4 cut(s) 72, 482, 726, 837
BmsI GCATC 3 cut(s) 214, 441, 607
BpuEI CTTGAG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 71, 480, 835, 867
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 93, 407, 782
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 242, 412
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 4 cut(s) 72, 482, 726, 837
BseDI CCNNGG 4 cut(s) 71, 480, 835, 867
BseGI GGATG 2 cut(s) 423, 613
BseLI CCNNNNNNNGG 4 cut(s) 72, 93, 407, 782
BseMI GCAATG 1 cut(s) 658
BseNI ACTGG 2 cut(s) 242, 412
BseRI GAGGAG 3 cut(s) 698, 747, 872
BseXI GCAGC 5 cut(s) 122, 389, 392, 522, 628
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 198, 757
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 352, 597
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 4 cut(s) 72, 93, 407, 782
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 3 cut(s) 198, 324, 757
Bsp143I GATC 4 cut(s) 343, 360, 579, 591
BspACI CCGC 3 cut(s) 274, 546, 639
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 2 cut(s) 242, 412
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 4 cut(s) 71, 480, 835, 867
BssMI GATC 4 cut(s) 343, 360, 579, 591
BssT1I CCWWGG 1 cut(s) 867
Bst2UI CCWGG 4 cut(s) 72, 482, 726, 837
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 303, 849
BstC8I GCNNGC 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 2 cut(s) 423, 613
BstKTI GATC 4 cut(s) 346, 363, 582, 594
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 4 cut(s) 343, 360, 579, 591
BstMWI GCNNNNNNNGC 3 cut(s) 519, 528, 626
BstNI CCWGG 4 cut(s) 72, 482, 726, 837
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 4 cut(s) 70, 480, 724, 835
BstV1I GCAGC 5 cut(s) 122, 389, 392, 522, 628
BstXI CCANNNNNNTGG 1 cut(s) 506
BsuRI GGCC 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 423, 613
BtsI GCAGTG 2 cut(s) 61, 538
BtsIMutI CAGTG 3 cut(s) 61, 235, 538
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 349, 874
CviAII CATG 5 cut(s) 374, 503, 626, 770, 811
CviQI GTAC 2 cut(s) 349, 874
DpnI GATC 4 cut(s) 345, 362, 581, 593
DpnII GATC 4 cut(s) 343, 360, 579, 591
Eam1104I CTCTTC 2 cut(s) 303, 849
EarI CTCTTC 2 cut(s) 303, 849
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 2 cut(s) 198, 324
Eco31I GGTCTC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 483, 590, 765
Eco88I CYCGRG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 202
EcoRII CCWGG 4 cut(s) 70, 480, 724, 835
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 867
EcoT38I GRGCYC 2 cut(s) 198, 324
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 5 cut(s) 377, 506, 629, 773, 814
FaiI YATR 8 cut(s) 338, 375, 477, 504, 627, 701, 771, 812
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 1 cut(s) 579
FatI CATG 5 cut(s) 373, 502, 625, 769, 810
FauI CCCGC 2 cut(s) 539, 646
Fnu4HI GCNGC 5 cut(s) 111, 378, 381, 511, 642
FokI GGATG 2 cut(s) 430, 620
FriOI GRGCYC 2 cut(s) 198, 324
Fsp4HI GCNGC 5 cut(s) 111, 378, 381, 511, 642
FspBI CTAG 3 cut(s) 330, 519, 528
GluI GCNGC 5 cut(s) 111, 378, 381, 511, 642
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 352, 597
Hin1II CATG 5 cut(s) 377, 506, 629, 773, 814
HindIII AAGCTT 2 cut(s) 491, 719
HinfI GANTC 3 cut(s) 37, 696, 807
HpaII CCGG 2 cut(s) 352, 597
HphI GGTGA 6 cut(s) 76, 196, 488, 586, 692, 797
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 430, 661, 761
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 9 cut(s) 294, 379, 386, 433, 536, 556, 565, 685, 776
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 265, 377, 629, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 519, 528, 626
Hsp92II CATG 5 cut(s) 377, 506, 629, 773, 814
Kzo9I GATC 4 cut(s) 343, 360, 579, 591
LmnI GCTCC 4 cut(s) 96, 760, 778, 837
Lsp1109I GCAGC 5 cut(s) 122, 389, 392, 522, 628
LweI GCATC 3 cut(s) 214, 441, 607
MaeI CTAG 3 cut(s) 330, 519, 528
MaeIII GTNAC 5 cut(s) 101, 161, 202, 670, 842
MalI GATC 4 cut(s) 345, 362, 581, 593
MboI GATC 4 cut(s) 343, 360, 579, 591
MhlI GDGCHC 3 cut(s) 198, 324, 757
MluCI AATT 4 cut(s) 91, 118, 180, 708
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 5 cut(s) 27, 604, 676, 768, 850
MroXI GAANNNNTTC 3 cut(s) 492, 695, 720
MseI TTAA 2 cut(s) 711, 822
MslI CAYNNNNRTG 3 cut(s) 501, 504, 783
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 2 cut(s) 352, 597
MspR9I CCNGG 4 cut(s) 72, 482, 726, 837
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 4 cut(s) 72, 482, 726, 837
MwoI GCNNNNNNNGC 3 cut(s) 519, 528, 626
NdeII GATC 4 cut(s) 343, 360, 579, 591
NlaIII CATG 5 cut(s) 377, 506, 629, 773, 814
NlaIV GGNNCC 1 cut(s) 242
NmuCI GTSAC 2 cut(s) 161, 202
OliI CACNNNNGTG 1 cut(s) 783
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 3 cut(s) 492, 695, 720
PfeI GAWTC 2 cut(s) 696, 807
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 5 cut(s) 112, 379, 382, 512, 643
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 4 cut(s) 70, 480, 724, 835
PspEI GGTNACC 1 cut(s) 202
PspGI CCWGG 4 cut(s) 70, 480, 724, 835
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 2 cut(s) 350, 875
RsaNI GTAC 2 cut(s) 349, 874
RseI CAYNNNNRTG 3 cut(s) 501, 504, 783
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 711, 822
SatI GCNGC 5 cut(s) 111, 378, 381, 511, 642
Sau3AI GATC 4 cut(s) 343, 360, 579, 591
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 875
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 72, 482, 726, 837
SduI GDGCHC 3 cut(s) 198, 324, 757
SfaNI GCATC 3 cut(s) 214, 441, 607
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 3 cut(s) 501, 504, 783
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 4 cut(s) 91, 118, 180, 708
SsiI CCGC 3 cut(s) 274, 546, 639
SspMI CTAG 3 cut(s) 330, 519, 528
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 4 cut(s) 70, 480, 724, 835
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 4 cut(s) 192, 222, 311, 660
TasI AATT 4 cut(s) 91, 118, 180, 708
TatI WGTACW 1 cut(s) 873
TfiI GAWTC 2 cut(s) 696, 807
Tru1I TTAA 2 cut(s) 711, 822
Tru9I TTAA 2 cut(s) 711, 822
TscAI CASTG 3 cut(s) 61, 242, 538
TseFI GTSAC 2 cut(s) 161, 202
TseI GCWGC 5 cut(s) 110, 377, 380, 510, 641
Tsp45I GTSAC 2 cut(s) 161, 202
TspDTI ATGAA 3 cut(s) 552, 688, 867
TspRI CASTG 3 cut(s) 61, 242, 538
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 2 cut(s) 118, 180
XmnI GAANNNNTTC 3 cut(s) 492, 695, 720
XspI CTAG 3 cut(s) 330, 519, 528
ZrmI AGTACT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.