Rh6BG239200

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013460
Physical Location & Seq
Reverse (-)
44519027 .. 44519628
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG239200.1

Sequence Viewer

Length: 528 bp
ATGGCAGATCAGTACCGGAACGAGATCAAAGAGAACCATGCAGCAGCGAAGGTGGAAGAAGAGCCTGTTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGAAGGAAAATGAGATGCCCCAACCTGAAGAACAGAAGCATACCCTGGCTGAAAAGTTCCGCCACCATGATGGCAGCAACTCTAGCTCATCTAGCAGTGATGAAGAAGGCGGGGAGAAGAAAAAGAAGGGACTGAAGGGTAAGATCAAGGAGAAGATCACCGGCAAAAAGGATGAGGAAGATGCTTACCATGCACCCATTCCGGCTGCAAAGAGTGGAGTAACAAATGGTGAGGAGAAGAAGGGATTCATAGAGAAAATTAAAGAAAAGCTTCCTGGACAGCACAAGGAAGCAGAAGTTAGTGCCCCTCCCGAGTATCATGCTCCACACGAAGGTGAGCCAAATGAGAAGAAAGGAATCATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAGAATGAAGAGGAGAAGCCCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

175

Amino Acids

19.63

Weight (kDa)

6.11

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 32 - 128 3.2e-22 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 210
AcuI CTGAAG 2 cut(s) 147, 254
AfaI GTAC 2 cut(s) 14, 524
AfiI CCNNNNNNNGG 2 cut(s) 71, 431
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 144, 373, 484
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 3 cut(s) 186, 370, 481
AluI AGCT 3 cut(s) 186, 370, 481
Ama87I CYCGRG 1 cut(s) 410
ApeKI GCWGC 4 cut(s) 41, 44, 174, 305
Asp700I GAANNNNTTC 2 cut(s) 344, 369
AsuHPI GGTGA 3 cut(s) 250, 341, 446
AvaI CYCGRG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 406
BbvI GCAGC 4 cut(s) 53, 56, 186, 292
BccI CCATC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 3 cut(s) 146, 375, 486
BfaI CTAG 2 cut(s) 183, 192
BisI GCNGC 4 cut(s) 42, 45, 175, 306
BlsI GCNGC 4 cut(s) 43, 46, 176, 307
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 3 cut(s) 146, 375, 486
BmeT110I CYCGRG 1 cut(s) 410
BmrFI CCNGG 3 cut(s) 146, 375, 486
BmsI GCATC 2 cut(s) 105, 271
BsaJI CCNNGG 3 cut(s) 144, 484, 516
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 431
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 3 cut(s) 146, 375, 486
BseDI CCNNGG 3 cut(s) 144, 484, 516
BseGI GGATG 2 cut(s) 87, 277
BseLI CCNNNNNNNGG 2 cut(s) 71, 431
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 2 cut(s) 347, 521
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 4 cut(s) 53, 56, 186, 292
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 3 cut(s) 16, 261, 302
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 71, 431
BsmFI GGGAC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 4 cut(s) 7, 24, 243, 255
BspACI CCGC 2 cut(s) 160, 210
BspQI GCTCTTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 144, 484, 516
BssMI GATC 4 cut(s) 7, 24, 243, 255
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 146, 375, 486
Bst6I CTCTTC 2 cut(s) 54, 498
BstF5I GGATG 2 cut(s) 87, 277
BstKTI GATC 4 cut(s) 10, 27, 246, 258
BstMBI GATC 4 cut(s) 7, 24, 243, 255
BstMWI GCNNNNNNNGC 3 cut(s) 183, 192, 290
BstNI CCWGG 3 cut(s) 146, 375, 486
BstSCI CCNGG 3 cut(s) 144, 373, 484
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 53, 56, 186, 292
BstXI CCANNNNNNTGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 87, 277
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 260
Csp6I GTAC 2 cut(s) 13, 523
CviAII CATG 5 cut(s) 38, 167, 290, 419, 460
CviJI RGCY 9 cut(s) 64, 75, 149, 186, 305, 370, 439, 481, 514
CviKI_1 RGCY 9 cut(s) 64, 75, 149, 186, 305, 370, 439, 481, 514
CviQI GTAC 2 cut(s) 13, 523
DpnI GATC 4 cut(s) 9, 26, 245, 257
DpnII GATC 4 cut(s) 7, 24, 243, 255
Eam1104I CTCTTC 2 cut(s) 54, 498
EarI CTCTTC 2 cut(s) 54, 498
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 147, 254
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 144, 373, 484
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 5 cut(s) 41, 170, 293, 422, 463
FaiI YATR 7 cut(s) 39, 141, 168, 291, 350, 420, 461
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 243
FatI CATG 5 cut(s) 37, 166, 289, 418, 459
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 4 cut(s) 42, 45, 175, 306
FokI GGATG 2 cut(s) 94, 284
Fsp4HI GCNGC 4 cut(s) 42, 45, 175, 306
FspBI CTAG 2 cut(s) 183, 192
GluI GCNGC 4 cut(s) 42, 45, 175, 306
HapII CCGG 3 cut(s) 16, 261, 302
Hin1II CATG 5 cut(s) 41, 170, 293, 422, 463
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 2 cut(s) 345, 456
HpaII CCGG 3 cut(s) 16, 261, 302
HphI GGTGA 3 cut(s) 250, 341, 446
Hpy188III TCNNGA 2 cut(s) 94, 410
HpyAV CCTTC 7 cut(s) 43, 97, 200, 220, 229, 334, 425
HpyCH4V TGCA 3 cut(s) 41, 293, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 192, 290
Hsp92II CATG 5 cut(s) 41, 170, 293, 422, 463
Kzo9I GATC 4 cut(s) 7, 24, 243, 255
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 427, 486
Lsp1109I GCAGC 4 cut(s) 53, 56, 186, 292
LweI GCATC 2 cut(s) 105, 271
MaeI CTAG 2 cut(s) 183, 192
MaeIII GTNAC 3 cut(s) 67, 319, 491
MalI GATC 4 cut(s) 9, 26, 245, 257
MboI GATC 4 cut(s) 7, 24, 243, 255
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 1 cut(s) 357
MnlI CCTC 4 cut(s) 268, 325, 417, 499
MroXI GAANNNNTTC 2 cut(s) 344, 369
MseI TTAA 2 cut(s) 360, 471
MslI CAYNNNNRTG 2 cut(s) 168, 432
MspI CCGG 3 cut(s) 16, 261, 302
MspR9I CCNGG 3 cut(s) 146, 375, 486
MvaI CCWGG 3 cut(s) 146, 375, 486
MwoI GCNNNNNNNGC 3 cut(s) 183, 192, 290
NdeII GATC 4 cut(s) 7, 24, 243, 255
NlaIII CATG 5 cut(s) 41, 170, 293, 422, 463
OliI CACNNNNGTG 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 344, 369
PfeI GAWTC 2 cut(s) 345, 456
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 4 cut(s) 43, 46, 176, 307
Psp6I CCWGG 3 cut(s) 144, 373, 484
PspGI CCWGG 3 cut(s) 144, 373, 484
RsaI GTAC 2 cut(s) 14, 524
RsaNI GTAC 2 cut(s) 13, 523
RseI CAYNNNNRTG 2 cut(s) 168, 432
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 360, 471
SatI GCNGC 4 cut(s) 42, 45, 175, 306
Sau3AI GATC 4 cut(s) 7, 24, 243, 255
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 146, 375, 486
SduI GDGCHC 1 cut(s) 406
SetI ASST 6 cut(s) 54, 127, 188, 372, 436, 483
SfaNI GCATC 2 cut(s) 105, 271
SmiMI CAYNNNNRTG 2 cut(s) 168, 432
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 160, 210
SspMI CTAG 2 cut(s) 183, 192
StyD4I CCNGG 3 cut(s) 144, 373, 484
StyI CCWWGG 1 cut(s) 516
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 345, 456
Tru1I TTAA 2 cut(s) 360, 471
Tru9I TTAA 2 cut(s) 360, 471
TscAI CASTG 1 cut(s) 202
TseI GCWGC 4 cut(s) 41, 44, 174, 305
TspDTI ATGAA 3 cut(s) 216, 337, 516
TspRI CASTG 1 cut(s) 202
XmnI GAANNNNTTC 2 cut(s) 344, 369
XspI CTAG 2 cut(s) 183, 192
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.