Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013460

Physical Location & Seq

Genomic Coordinates Reverse (-)

21353287 .. 21354205

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1132400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGGTGACTAGCTCGTCTAGCAGTGACGGAGAAGGTGGAGAGAATAAAAAGAAGGGACTTAAGGGTAAGATGAAGGAGAAGGTATCAGGCAACAAGGAAGAGGGAGATGCTTACCATGCATCCGTTCCAGCAAAGAACGGACACAGTGATGAGAAGGGATTTGTAGAGAAAATTAAAGACAAGCTTCCGGGACAGCACAAGGAGGCCGAACATCTTGCTGAGGAGAAAGGATTTGTAGAGAAAATCAAGGACAAGCTTCCGGGACAGCACAAAGTGGCTGAGCATGGTGCTAGGGAGAAGGGATTTGTCGAGAAGATCAAAGAAAAGCTTCCGGGACAGCACAAGGAGGCTGGAAATGGTGCTCATGCGGAGTATCACGCTCCGGATGGGCATTCCCACGACAGCGAGCCAAAGAAAGGGGTCTTGGAAAAGATTAAGGACAAGCTCCCTGGGGGTCACAAGAATGAAGAGAAGAAGCACAAGGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

165

Amino Acids

17.97

Weight (kDa)

8.78

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	5 - 67	5.2e-13	Dehydrin
Dehydrin	PF00257	97 - 154	6.3e-12	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38410
fragaria_vesca	FvH4_2g16030
malus_domestica	MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica	Prupe.8G173200_v2.0.a1
pyrus_communis	pycom05g12570 pycom10g11360
rosa_chinensis	RchiOBHm_Chr6g0279611
rosa_laevigata	RLG00000013133
rosa_multiflora	Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii	Rroxscaffold_7G00188790
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana	Rw6G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	2 cut(s)	5, 371
AdeI	CACNNNGTG	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	15, 187, 259, 331, 448
AluI	AGCT	5 cut(s)	15, 187, 259, 331, 448
Alw21I	GWGCWC	1 cut(s)	367
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	330
AsuC2I	CCSGG	3 cut(s)	192, 264, 336
AsuHPI	GGTGA	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	3 cut(s)	192, 264, 336
BfaI	CTAG	3 cut(s)	12, 21, 294
BfrI	CTTAAG	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	282
Bme1390I	CCNGG	4 cut(s)	192, 264, 336, 453
BmrFI	CCNGG	4 cut(s)	192, 264, 336, 453
BmsI	GCATC	2 cut(s)	100, 131
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	192, 264, 336
BsaJI	CCNNGG	2 cut(s)	451, 452
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
BseAI	TCCGGA	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	451, 452
BseGI	GGATG	2 cut(s)	122, 394
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	213, 273
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	4 cut(s)	191, 263, 335, 386
BslFI	GGGAC	4 cut(s)	72, 207, 279, 351
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmFI	GGGAC	4 cut(s)	72, 207, 279, 351
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	5, 371
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	214, 274
BspEI	TCCGGA	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	451, 452
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	96, 465
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	222, 282
BstF5I	GGATG	2 cut(s)	122, 394
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 119
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	4 cut(s)	190, 262, 334, 451
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	122, 394
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 154
Cac8I	GCNNGC	1 cut(s)	410
CviAII	CATG	3 cut(s)	119, 287, 368
CviJI	RGCY	9 cut(s)	15, 187, 209, 259, 281, 331, 353, 412, 448
CviKI_1	RGCY	9 cut(s)	15, 187, 209, 259, 281, 331, 353, 412, 448
DdeI	CTNAG	2 cut(s)	222, 282
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraIII	CACNNNGTG	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	96, 465
EarI	CTCTTC	2 cut(s)	96, 465
EcoRII	CCWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	3 cut(s)	122, 290, 371
FaiI	YATR	3 cut(s)	120, 288, 369
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 315, 347
FaqI	GGGAC	4 cut(s)	72, 207, 279, 351
FatI	CATG	3 cut(s)	118, 286, 367
FokI	GGATG	2 cut(s)	109, 401
FspBI	CTAG	3 cut(s)	12, 21, 294
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	4 cut(s)	191, 263, 335, 386
Hin1II	CATG	3 cut(s)	122, 290, 371
HindIII	AAGCTT	3 cut(s)	185, 257, 329
HpaII	CCGG	4 cut(s)	191, 263, 335, 386
HphI	GGTGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	313, 386
HpyAV	CCTTC	6 cut(s)	29, 49, 70, 76, 151, 295
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 119
HpyF3I	CTNAG	2 cut(s)	222, 282
Hsp92II	CATG	3 cut(s)	122, 290, 371
Kpn2I	TCCGGA	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	388, 453
LpnPI	CCDG	9 cut(s)	75, 144, 204, 276, 339, 348, 399, 438, 465
LweI	GCATC	2 cut(s)	100, 131
MaeI	CTAG	3 cut(s)	12, 21, 294
MaeIII	GTNAC	3 cut(s)	7, 26, 458
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	4 cut(s)	113, 328, 482, 487
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	4 cut(s)	97, 199, 217, 343
Mph1103I	ATGCAT	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	3 cut(s)	63, 177, 438
MslI	CAYNNNNRTG	2 cut(s)	150, 465
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	4 cut(s)	191, 263, 335, 386
MspR9I	CCNGG	4 cut(s)	192, 264, 336, 453
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	21, 119
NciI	CCSGG	3 cut(s)	192, 264, 336
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	3 cut(s)	122, 290, 371
NmuCI	GTSAC	3 cut(s)	7, 26, 458
NsiI	ATGCAT	1 cut(s)	124
PasI	CCCWGGG	1 cut(s)	452
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	330
PfoI	TCCNGGA	3 cut(s)	190, 262, 334
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
RseI	CAYNNNNRTG	2 cut(s)	150, 465
SaqAI	TTAA	3 cut(s)	63, 177, 438
Sau3AI	GATC	1 cut(s)	318
ScrFI	CCNGG	4 cut(s)	192, 264, 336, 453
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	17, 40, 87, 189, 261, 333, 450
SfaNI	GCATC	2 cut(s)	100, 131
SmiMI	CAYNNNNRTG	2 cut(s)	150, 465
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	5, 371
SspMI	CTAG	3 cut(s)	12, 21, 294
StyD4I	CCNGG	4 cut(s)	190, 262, 334, 451
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	174
Tru1I	TTAA	3 cut(s)	63, 177, 438
Tru9I	TTAA	3 cut(s)	63, 177, 438
TscAI	CASTG	2 cut(s)	31, 154
TseFI	GTSAC	3 cut(s)	7, 26, 458
Tsp45I	GTSAC	3 cut(s)	7, 26, 458
TspDTI	ATGAA	2 cut(s)	89, 483
TspGWI	ACGGA	3 cut(s)	45, 115, 156
TspRI	CASTG	2 cut(s)	31, 154
Vha464I	CTTAAG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	3 cut(s)	12, 21, 294
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.