Rh6AG234700

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013460
Physical Location & Seq
Reverse (-)
41876364 .. 41876962
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG234700.1

Sequence Viewer

Length: 525 bp
ATGGCAGATCAGTACCGGAAAGAGATCAAAGAGAACCATGCAGCAGCGAAGGTGGAAGAAGAGCCTGCTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGGAAAATGAGATGCCCCAACCTGAAGAACAGAAGCATACCCTGGCTGAAAAGTTCCACCACCATGATGGCGGCAACTCTAGCTCATCTAGCAGTGATGAAGAAGGCGGGGAGAAGAAAAAGAAGGGACTGAAGGGTAAGATCAAGGAGAAGATCACCGGCAAAAAGGATGAGGAAGATGCTTACCATGCACCCATTCCCACTGCAAAGAGTGGAGTACCAAATGGTGAGGAGAAGAAGGGATTCATAGAGAAAATTAAAGAAAAGCTTCCTGGACAGCACAAGGAAGCAGAAGTTAGTGCCCCTCCCGAGTATCATGCTCCACACGAAGGTGAGCCAAATGAGAAGAAAGGAATCATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAGAATGAAGAGGAGAAGCCCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

6.03

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 29 - 127 1.8e-21 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 171, 207
AcuI CTGAAG 2 cut(s) 144, 251
AfaI GTAC 3 cut(s) 14, 318, 521
AfiI CCNNNNNNNGG 2 cut(s) 71, 428
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 141, 370, 481
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 3 cut(s) 183, 367, 478
AluI AGCT 3 cut(s) 183, 367, 478
Ama87I CYCGRG 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 41, 44
Asp700I GAANNNNTTC 2 cut(s) 341, 366
AsuHPI GGTGA 3 cut(s) 247, 338, 443
AvaI CYCGRG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 53, 56
BccI CCATC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 3 cut(s) 143, 372, 483
BfaI CTAG 2 cut(s) 180, 189
BisI GCNGC 3 cut(s) 42, 45, 172
BlsI GCNGC 3 cut(s) 43, 46, 173
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 143, 372, 483
BmeT110I CYCGRG 1 cut(s) 407
BmrFI CCNGG 3 cut(s) 143, 372, 483
BmsI GCATC 2 cut(s) 102, 268
BsaJI CCNNGG 3 cut(s) 141, 481, 513
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 428
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 3 cut(s) 143, 372, 483
BseDI CCNNGG 3 cut(s) 141, 481, 513
BseGI GGATG 2 cut(s) 87, 274
BseLI CCNNNNNNNGG 2 cut(s) 71, 428
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 2 cut(s) 344, 518
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 53, 56
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 2 cut(s) 16, 258
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 71, 428
BsmFI GGGAC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 4 cut(s) 7, 24, 240, 252
BspACI CCGC 2 cut(s) 171, 207
BspQI GCTCTTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 141, 481, 513
BssMI GATC 4 cut(s) 7, 24, 240, 252
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 143, 372, 483
Bst6I CTCTTC 2 cut(s) 54, 495
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 87, 274
BstKTI GATC 4 cut(s) 10, 27, 243, 255
BstMBI GATC 4 cut(s) 7, 24, 240, 252
BstMWI GCNNNNNNNGC 3 cut(s) 180, 189, 287
BstNI CCWGG 3 cut(s) 143, 372, 483
BstSCI CCNGG 3 cut(s) 141, 370, 481
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 53, 56
BstXI CCANNNNNNTGG 1 cut(s) 167
BtsCI GGATG 2 cut(s) 87, 274
BtsI GCAGTG 2 cut(s) 199, 300
BtsIMutI CAGTG 2 cut(s) 199, 300
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 257
Csp6I GTAC 3 cut(s) 13, 317, 520
CviAII CATG 5 cut(s) 38, 164, 287, 416, 457
CviJI RGCY 8 cut(s) 64, 75, 146, 183, 367, 436, 478, 511
CviKI_1 RGCY 8 cut(s) 64, 75, 146, 183, 367, 436, 478, 511
CviQI GTAC 3 cut(s) 13, 317, 520
DpnI GATC 4 cut(s) 9, 26, 242, 254
DpnII GATC 4 cut(s) 7, 24, 240, 252
Eam1104I CTCTTC 2 cut(s) 54, 495
EarI CTCTTC 2 cut(s) 54, 495
Eco130I CCWWGG 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 144, 251
Eco88I CYCGRG 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 141, 370, 481
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 5 cut(s) 41, 167, 290, 419, 460
FaiI YATR 7 cut(s) 39, 138, 165, 288, 347, 417, 458
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 240
FatI CATG 5 cut(s) 37, 163, 286, 415, 456
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 42, 45, 172
FokI GGATG 2 cut(s) 94, 281
Fsp4HI GCNGC 3 cut(s) 42, 45, 172
FspBI CTAG 2 cut(s) 180, 189
GluI GCNGC 3 cut(s) 42, 45, 172
HapII CCGG 2 cut(s) 16, 258
Hin1II CATG 5 cut(s) 41, 167, 290, 419, 460
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 342, 453
HpaII CCGG 2 cut(s) 16, 258
HphI GGTGA 3 cut(s) 247, 338, 443
Hpy188III TCNNGA 2 cut(s) 94, 407
HpyAV CCTTC 7 cut(s) 43, 94, 197, 217, 226, 331, 422
HpyCH4V TGCA 3 cut(s) 41, 290, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 189, 287
Hsp92II CATG 5 cut(s) 41, 167, 290, 419, 460
Kzo9I GATC 4 cut(s) 7, 24, 240, 252
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 424, 483
Lsp1109I GCAGC 2 cut(s) 53, 56
LweI GCATC 2 cut(s) 102, 268
MaeI CTAG 2 cut(s) 180, 189
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 9, 26, 242, 254
MboI GATC 4 cut(s) 7, 24, 240, 252
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 1 cut(s) 354
MnlI CCTC 4 cut(s) 265, 322, 414, 496
MroXI GAANNNNTTC 2 cut(s) 341, 366
MseI TTAA 2 cut(s) 357, 468
MslI CAYNNNNRTG 3 cut(s) 162, 165, 429
MspI CCGG 2 cut(s) 16, 258
MspR9I CCNGG 3 cut(s) 143, 372, 483
MvaI CCWGG 3 cut(s) 143, 372, 483
MwoI GCNNNNNNNGC 3 cut(s) 180, 189, 287
NdeII GATC 4 cut(s) 7, 24, 240, 252
NlaIII CATG 5 cut(s) 41, 167, 290, 419, 460
OliI CACNNNNGTG 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 341, 366
PfeI GAWTC 2 cut(s) 342, 453
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 3 cut(s) 43, 46, 173
Psp6I CCWGG 3 cut(s) 141, 370, 481
PspGI CCWGG 3 cut(s) 141, 370, 481
RsaI GTAC 3 cut(s) 14, 318, 521
RsaNI GTAC 3 cut(s) 13, 317, 520
RseI CAYNNNNRTG 3 cut(s) 162, 165, 429
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 357, 468
SatI GCNGC 3 cut(s) 42, 45, 172
Sau3AI GATC 4 cut(s) 7, 24, 240, 252
ScaI AGTACT 1 cut(s) 521
ScrFI CCNGG 3 cut(s) 143, 372, 483
SduI GDGCHC 1 cut(s) 403
SetI ASST 6 cut(s) 54, 124, 185, 369, 433, 480
SfaNI GCATC 2 cut(s) 102, 268
SmiMI CAYNNNNRTG 3 cut(s) 162, 165, 429
Sse9I AATT 1 cut(s) 354
SsiI CCGC 2 cut(s) 171, 207
SspMI CTAG 2 cut(s) 180, 189
StyD4I CCNGG 3 cut(s) 141, 370, 481
StyI CCWWGG 1 cut(s) 513
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 519
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 342, 453
Tru1I TTAA 2 cut(s) 357, 468
Tru9I TTAA 2 cut(s) 357, 468
TscAI CASTG 2 cut(s) 199, 307
TseI GCWGC 2 cut(s) 41, 44
TspDTI ATGAA 3 cut(s) 213, 334, 513
TspRI CASTG 2 cut(s) 199, 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 2 cut(s) 341, 366
XspI CTAG 2 cut(s) 180, 189
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.