FvH4_2g17570

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017243
Physical Location & Seq
Forward (+)
15116082 .. 15118571
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17570.t1

Sequence Viewer

Length: 927 bp
ATGTCCAAAACAATACAGGTAACGCTACTGCTAACTACATATATATTGCTCTTTCTCTTCTCCTATCCCGAACAGCAACACGATCACAAAGCTGGTGTAGTCACCATGGGACACTTTTCAGAGGAGAATCTAGGATTCCAGTCTGGAGCTCCTATACCAGGGCTGAATCCTACATCAAATCAGTTTGGAAATGCATTTTGTGGAGCTGGGTCGGGACTCATTCGAGAGGGATTGGGTGCTTATGGGAAGAGAATTTGTGGATCCAGTTCACAGTATGTGCAAAGCAATATAATAAAGTGCTTCTCGGATCCTCAATACTACTTTCAAGTGAATGCGCACTATGTCAGGAACAAGCTGAAGATAATTCTATTTCCATTTCTTCACAGGGGACACTGGACCAGGATAACAGAGCCAATTGGAGGCAGGCTTTCCTATAATCCTCCAATTAATGACATAAATGCTCCAGATCTATACATTCCATTCATGACATTTGCGACATACTTGGTTCTTGCTGGCATCTCACTCGGCCTTTCTGGGAAATTTAGTCCAGAAGCCTTAAATTGGCAGTTCGTGAAAGGAATGGGAAGCTGGTTGTTCCAAGCAATGTTGTTGAAGGCATCATTGACTTCGCTAGGCGGAGGAGAGGCGCCATTGTTGGACATGATAGCATATGCTGGGTACACATTCACAGGGTTGTGTGTGGCTGTTGTAGGGAGAATCACATTGAGCTATGCGTACTACTTGATAGTCATATGGACATCCATGTGCTCAGGCATCTTCTTGGCTAAGACGATTAAGCTAACTTTGTATGCCGAGGCTAGGAGTTACGATGTCACCATTCATAACTATCTCTTGCTAGGTATTGCATTTTCTCCTTTCCCATTCATCTTCTGCCTAAGCAACCCTACAGGGAATTGGATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

309

Amino Acids

34.02

Weight (kDa)

8.8

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 80 - 277 8.8e-50 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17570
malus_domestica MD10G1149100.v1.1
prunus_persica Prupe.8G187900_v2.0.a1
pyrus_communis pycom10g12870
rosa_chinensis RchiOBHm_Chr6g0282511
rosa_multiflora Rmu_sc0000283.1_g000013 Rmu_sc0005697.1_g000030
rosa_roxburghii Rroxscaffold_7G00186300
rosa_rugosa Rorug06G0147000
rosa_samantha Rh6AG260400 Rh6CG262600 Rh6DG254500
rosa_wichuraiana Rw6G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 646
AciI CCGC 1 cut(s) 636
AclWI GGATC 4 cut(s) 255, 268, 302, 315
AcsI RAATTY 2 cut(s) 252, 539
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 647
AfaI GTAC 2 cut(s) 680, 737
AfiI CCNNNNNNNGG 4 cut(s) 158, 419, 561, 819
AgsI TTSAA 2 cut(s) 326, 613
AjnI CCWGG 2 cut(s) 157, 398
AluBI AGCT 7 cut(s) 92, 149, 206, 355, 588, 729, 799
AluI AGCT 7 cut(s) 92, 149, 206, 355, 588, 729, 799
Alw21I GWGCWC 2 cut(s) 151, 770
AlwI GGATC 4 cut(s) 255, 268, 302, 315
AoxI GGCC 1 cut(s) 526
ApoI RAATTY 2 cut(s) 252, 539
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 2 cut(s) 337, 649
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 94, 826
AvaII GGWCC 1 cut(s) 396
BamHI GGATCC 2 cut(s) 260, 307
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 151, 770
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BciT130I CCWGG 2 cut(s) 159, 400
BfaI CTAG 4 cut(s) 131, 632, 819, 857
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 650
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 159, 400
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 3 cut(s) 262, 309, 648
BmrFI CCNGG 2 cut(s) 159, 400
BmsI GCATC 3 cut(s) 525, 626, 783
BpmI CTGGAG 2 cut(s) 165, 447
Bpu10I CCTNAGC 2 cut(s) 769, 896
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 105, 158, 813
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 419, 561, 819
Bse1I ACTGG 3 cut(s) 139, 264, 398
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 2 cut(s) 159, 400
BseDI CCNNGG 3 cut(s) 105, 158, 813
BseGI GGATG 1 cut(s) 758
BseLI CCNNNNNNNGG 4 cut(s) 158, 419, 561, 819
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 3 cut(s) 139, 264, 398
BseRI GAGGAG 2 cut(s) 137, 654
BseYI CCCAGC 2 cut(s) 206, 674
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 646
BsiHKAI GWGCWC 2 cut(s) 151, 770
BslFI GGGAC 3 cut(s) 123, 228, 402
BslI CCNNNNNNNGG 4 cut(s) 158, 419, 561, 819
BsmFI GGGAC 3 cut(s) 123, 228, 402
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 151, 770
Bsp143I GATC 4 cut(s) 82, 260, 307, 466
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 636
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 1 cut(s) 782
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 262, 309, 648
BspPI GGATC 4 cut(s) 255, 268, 302, 315
BspT107I GGYRCC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 3 cut(s) 139, 264, 398
BssECI CCNNGG 3 cut(s) 105, 158, 813
BssMI GATC 4 cut(s) 82, 260, 307, 466
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 159, 400
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 2 cut(s) 62, 242
BstACI GRCGYC 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 425, 514
BstDEI CTNAG 3 cut(s) 769, 786, 896
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 758
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 2 cut(s) 337, 649
BstKTI GATC 4 cut(s) 85, 263, 310, 469
BstMBI GATC 4 cut(s) 82, 260, 307, 466
BstNI CCWGG 2 cut(s) 159, 400
BstSCI CCNGG 2 cut(s) 157, 398
BstSFI CTRYAG 1 cut(s) 906
BstX2I RGATCY 3 cut(s) 260, 307, 466
BstYI RGATCY 3 cut(s) 260, 307, 466
BsuRI GGCC 1 cut(s) 528
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 758
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 425, 514
CciI TCATGA 1 cut(s) 483
CfoI GCGC 2 cut(s) 337, 649
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 679, 736
CviAII CATG 4 cut(s) 106, 484, 661, 763
CviQI GTAC 2 cut(s) 679, 736
DdeI CTNAG 3 cut(s) 769, 786, 896
DinI GGCGCC 1 cut(s) 648
DpnI GATC 4 cut(s) 84, 262, 309, 468
DpnII GATC 4 cut(s) 82, 260, 307, 466
Eam1104I CTCTTC 2 cut(s) 62, 242
EarI CTCTTC 2 cut(s) 62, 242
EciI GGCGGA 1 cut(s) 651
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 157, 398
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 151
EgeI GGCGCC 1 cut(s) 648
EheI GGCGCC 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 4 cut(s) 109, 487, 664, 766
FaqI GGGAC 3 cut(s) 123, 228, 402
FatI CATG 4 cut(s) 105, 483, 660, 762
FauNDI CATATG 2 cut(s) 670, 752
FokI GGATG 1 cut(s) 745
FriOI GRGCYC 1 cut(s) 151
FspAI RTGCGCAY 1 cut(s) 336
FspBI CTAG 4 cut(s) 131, 632, 819, 857
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 2 cut(s) 336, 648
GsaI CCCAGC 2 cut(s) 210, 678
GsuI CTGGAG 2 cut(s) 165, 447
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 1 cut(s) 528
HhaI GCGC 2 cut(s) 337, 649
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 4 cut(s) 109, 487, 664, 766
Hin6I GCGC 2 cut(s) 335, 647
HinP1I GCGC 2 cut(s) 335, 647
HinfI GANTC 5 cut(s) 127, 135, 166, 216, 717
HphI GGTGA 2 cut(s) 94, 826
Hpy166II GTNNAC 2 cut(s) 269, 681
Hpy188I TCNGA 2 cut(s) 121, 307
Hpy8I GTNNAC 2 cut(s) 269, 681
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 194, 280, 866
HpyF3I CTNAG 3 cut(s) 769, 786, 896
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 4 cut(s) 109, 487, 664, 766
HspAI GCGC 2 cut(s) 335, 647
KasI GGCGCC 1 cut(s) 646
Kzo9I GATC 4 cut(s) 82, 260, 307, 466
LmnI GCTCC 4 cut(s) 146, 154, 203, 466
LweI GCATC 3 cut(s) 525, 626, 783
MaeI CTAG 4 cut(s) 131, 632, 819, 857
MaeIII GTNAC 4 cut(s) 19, 100, 824, 832
MalI GATC 4 cut(s) 84, 262, 309, 468
MboI GATC 4 cut(s) 82, 260, 307, 466
MboII GAAGA 6 cut(s) 49, 259, 370, 371, 769, 880
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 3 cut(s) 260, 307, 466
MhlI GDGCHC 2 cut(s) 151, 770
MluCI AATT 7 cut(s) 252, 363, 414, 444, 539, 559, 913
Mly113I GGCGCC 1 cut(s) 647
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 8 cut(s) 115, 220, 321, 413, 450, 632, 637, 808
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 3 cut(s) 447, 557, 795
MslI CAYNNNNRTG 1 cut(s) 763
MspR9I CCNGG 2 cut(s) 159, 400
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 159, 400
NarI GGCGCC 1 cut(s) 647
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 2 cut(s) 670, 752
NdeII GATC 4 cut(s) 82, 260, 307, 466
NlaIII CATG 4 cut(s) 109, 487, 664, 766
NlaIV GGNNCC 3 cut(s) 262, 309, 648
NmeAIII GCCGAG 2 cut(s) 504, 838
NmuCI GTSAC 2 cut(s) 100, 832
NsbI TGCGCA 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 196
PagI TCATGA 1 cut(s) 483
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 4 cut(s) 127, 135, 166, 717
PleI GAGTC 1 cut(s) 210
PluTI GGCGCC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 157, 398
PspFI CCCAGC 2 cut(s) 206, 674
PspGI CCWGG 2 cut(s) 157, 398
PspN4I GGNNCC 3 cut(s) 262, 309, 648
PspPI GGNCC 1 cut(s) 396
PsuI RGATCY 3 cut(s) 260, 307, 466
RsaI GTAC 2 cut(s) 680, 737
RsaNI GTAC 2 cut(s) 679, 736
RseI CAYNNNNRTG 1 cut(s) 763
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 447, 557, 795
Sau3AI GATC 4 cut(s) 82, 260, 307, 466
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 159, 400
SduI GDGCHC 2 cut(s) 151, 770
SetI ASST 9 cut(s) 21, 94, 151, 208, 357, 590, 731, 801, 862
SfaNI GCATC 3 cut(s) 525, 626, 783
SfcI CTRYAG 1 cut(s) 906
SfoI GGCGCC 1 cut(s) 648
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 763
Sse9I AATT 7 cut(s) 252, 363, 414, 444, 539, 559, 913
SsiI CCGC 1 cut(s) 636
SspDI GGCGCC 1 cut(s) 646
SspMI CTAG 4 cut(s) 131, 632, 819, 857
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 157, 398
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 223
TasI AATT 7 cut(s) 252, 363, 414, 444, 539, 559, 913
TfiI GAWTC 4 cut(s) 127, 135, 166, 717
Tru1I TTAA 3 cut(s) 447, 557, 795
Tru9I TTAA 3 cut(s) 447, 557, 795
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 2 cut(s) 100, 832
Tsp45I GTSAC 2 cut(s) 100, 832
TspDTI ATGAA 3 cut(s) 472, 830, 874
TspRI CASTG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 396
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 2 cut(s) 252, 539
XspI CTAG 4 cut(s) 131, 632, 819, 857
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.